FvH4_6g53850

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015220
Physical Location & Seq
Forward (+)
39414857 .. 39418490
3634 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53850.t1

Sequence Viewer

Length: 1893 bp
ATGAAAGCTTCGTCGGCAACAGAGCTAGCGAGTCGAATAAGCCGAGCTCTGATCTCCGCTTCCAACAACACAAAGCCAACTCGCTCATGGAGCCCTTCCCTCGAGAACCTCCTCCACCGCCTCGGCTGCCGCGACTCACTGAGTCCGCAACTCGTCGCCGGAGTCATCGACCCTTTCCTCCTCAACCACCACTCCCTCGCTCTCGGCTTCTTCAACTGGGCTTCTCAGCAACCCTCCTTCTCCCACACCTCCCTCACCTACCAGTCAGTCCTCAAGTCTCTCTCTTTTTCCCGCCAATTTAACACCATTGATGCTCTGCTCAAGCAGGTCAGGACCCACAAAATCTGGCTCGATGCTTCGGTGTACCGGTCCGTGATTGCTTCACTGATCATAGGAAAGAAGACCCACAATGCGTTCTTGGTGTTCAGCGAGGTTAGGATTGAAGATATTGGGCATGAGATTTGCAACTCACTTTTGGCTGCTCTGGCTTCTGATGGGTATTTCGATCATGCCCAGAACGTGTTTGATGAAATGACTCAAAGAGGTGTGCCTTTGAGCACAGCTGGTTTTGGTTTGTTTGTGTGGAGGTTATGTGGGAGTGGTGAATTGAGTAAGATTTTGAGTGTGGTAGATGAGGTTAGGAGGGGTGGTTCGGAGATTAATGGGTCCGTTGTGGCGCTTTTGATCATTCACGGGCTTTGTAAGGCGTCGAGAGTGTCAGAGGCTTTCTGGGTGCTGGATGAGCTGAGGAGGAGAGACTGCAAACCTGATTTCATGGCATATAGGATTGTTGCTGAAGGGTTTCGATGTGATGGGAATGTGGTTGATAGAGAGAAGGTTTTGAAGATGAAGAGAAAGCTAGGGGTAGCTCCGAGGAGTGGTGATTATAGAGAGTTCATACTTGGGTTGATTTCAGAGAGACGGATATCTGAAGCGAAGGACTTGGGAGAAGTGATAGTTAGCGGTAACTTTCCAATTGAAGATGATGTTCTCAATGTGTTGATAGGATCAGTGTCGGCCATTGATCCTGGCTCTGCAATGATGTTTTTCAAGTTCATGGTTGGAAAAGCGAGATTCCCAACTCTTTTGACATTGAGCAATTTGTGTAGGAATCTAAGTAAGCATAGCAACTCTGATGAACTGCTGGAAGTTTTTCAAGTTCTGTCTTCGGGTGATTATTTTAAAGATGTGGAGACTTACAATGTGATGGTGTCATTCCTGTGCAAAGCAGGAATGGTGAAGGAAGGCTATGGGGTACTTCCAGAGATGAAGAAGAAAGGGATAAGCCCAGATCTTACAACTTATAATTCTCTTATTGAAGCATGTTGTAGGGAAGATCTATTGAGGCCTGCTAAAAGGCTGTGGGATGAGATGTTTGCAAATGGGTGCAGAGGAAATTTGAAGACTTACAACATCTTAATTCAGAAGTTTTCGGAAGTAGGCCCAGTTGATGAGGCTCTAAGGCTCTTTCAACACATGCTGGGAAGAGAAGTGACACCTGATGCGATGACTTACACAATTCTGCTTGAAGGGCTTTGTCAAGAAATAAAGCTTCAAGCTGCTCTGGAAGTTTTCGACGAGTGTGTTGAACAGGATTTGATGCTTGCGCAATCTTTGTTGGGTACATTTATCCTCTCTTTATGCAAAGCAGGTCTTTACCCTGCCGCTTCTGGGTTACTCTGCCGCCTCAGTTTTAATGTAGCACGTTCAGATTCTCATGTAGTTCTGCTGAAATGTTTAGCCGATGCTAAAGAGATTCCGGTGGCAATTGAACACATTAAATGGATTCGCCAAGCTTCACCCTCCTTGTTGCAAACCATTTCAAATGAACTAGCATCGGTTTCTTCTTCTCCAACACCAGAGCCGATTTCACAGTTGCTTCAAACAATTTAG

Protein Analysis

631

Amino Acids

69.85

Weight (kDa)

6.89

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 229 - 268 6.1e-06 PPR repeat family
TPR_24 PF23276 375 - 493 3.2e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 395 - 444 3.7e-15 PPR repeat family
PPR_3 PF13812 396 - 442 9.4e-07 Pentatricopeptide repeat domain
PPR_long PF17177 398 - 510 1.8e-09 Pentacotripeptide-repeat region of PRORP
PPR PF01535 399 - 428 3.5e-06 PPR repeat
PPR_3 PF13812 419 - 477 1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 426 - 458 7.3e-09 PPR repeat
PPR_2 PF13041 430 - 477 2.7e-12 PPR repeat family
PPR PF01535 434 - 463 7.3e-06 PPR repeat
PPR_2 PF13041 468 - 514 3.2e-13 PPR repeat family
PPR_1 PF12854 497 - 527 1.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14080
fragaria_vesca FvH4_6g53850
malus_domestica MD09G1008000.v1.1
prunus_persica Prupe.3G308900_v2.0.a1 Prupe.3G308900_v2.0.a1
pyrus_communis pycom111g00640
rosa_chinensis RchiOBHm_Chr2g0175991
rosa_laevigata RLG00000022371
rosa_multiflora Rmu_sc0012513.1_g000006
rosa_roxburghii Rroxscaffold_2G00076880
rosa_rugosa Rorug02G0589200
rosa_samantha Rh2AG668400 Rh2BG679900 Rh2CG642800 Rh2DG693600
rosa_wichuraiana Rw2G054800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1305
Acc16I TGCGCA 1 cut(s) 1608
Acc36I ACCTGC 2 cut(s) 316, 1640
AccII CGCG 1 cut(s) 132
AciI CCGC 8 cut(s) 57, 118, 130, 146, 292, 963, 1665, 1684
AclWI GGATC 2 cut(s) 1015, 1019
AcoI YGGCCR 1 cut(s) 1017
AcsI RAATTY 1 cut(s) 1396
AcuI CTGAAG 2 cut(s) 816, 951
AcyI GRCGYC 1 cut(s) 707
AfaI GTAC 3 cut(s) 365, 1257, 1624
AfiI CCNNNNNNNGG 2 cut(s) 878, 1671
AflIII ACRYGT 1 cut(s) 519
AgeI ACCGGT 1 cut(s) 366
AjnI CCWGG 1 cut(s) 1027
AloI GAACNNNNNNTCC 2 cut(s) 634, 666
Alw21I GWGCWC 2 cut(s) 49, 560
Alw26I GTCTC 4 cut(s) 282, 750, 913, 1187
AlwI GGATC 2 cut(s) 1015, 1019
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 3 cut(s) 1017, 1346, 1441
ApeKI GCWGC 3 cut(s) 126, 479, 1559
ApoI RAATTY 1 cut(s) 1396
AseI ATTAAT 1 cut(s) 660
AsiGI ACCGGT 1 cut(s) 366
Asp700I GAANNNNTTC 2 cut(s) 801, 1152
AspLEI GCGC 2 cut(s) 679, 1609
AspS9I GGNCC 4 cut(s) 333, 369, 666, 1442
AsuHPI GGTGA 6 cut(s) 247, 614, 893, 1184, 1249, 1791
AsuNHI GCTAGC 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 3 cut(s) 333, 369, 666
BanII GRGCYC 2 cut(s) 49, 95
BbsI GAAGAC 3 cut(s) 407, 1158, 1409
Bbv12I GWGCWC 2 cut(s) 49, 560
BbvCI CCTCAGC 1 cut(s) 746
BbvI GCAGC 3 cut(s) 113, 466, 1546
BccI CCATC 3 cut(s) 488, 806, 1201
BciT130I CCWGG 1 cut(s) 1029
BclI TGATCA 2 cut(s) 387, 684
BcoDI GTCTC 4 cut(s) 282, 750, 913, 1187
BfaI CTAG 3 cut(s) 26, 860, 1832
BfoI RGCGCY 1 cut(s) 680
BfuAI ACCTGC 2 cut(s) 316, 1640
BglII AGATCT 2 cut(s) 1291, 1336
BisI GCNGC 6 cut(s) 127, 130, 480, 1560, 1665, 1684
BlsI GCNGC 6 cut(s) 128, 131, 481, 1561, 1666, 1685
Bme1390I CCNGG 1 cut(s) 1029
Bme18I GGWCC 3 cut(s) 333, 369, 666
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 4 cut(s) 333, 369, 666, 1442
BmiI GGNNCC 3 cut(s) 92, 335, 667
BmrFI CCNGG 1 cut(s) 1029
BmrI ACTGGG 2 cut(s) 226, 1439
BmsI GCATC 6 cut(s) 301, 343, 1492, 1590, 1735, 1844
BmtI GCTAGC 1 cut(s) 29
BmuI ACTGGG 2 cut(s) 226, 1439
BpiI GAAGAC 3 cut(s) 407, 1158, 1409
Bpu10I CCTNAGC 1 cut(s) 746
BpuEI CTTGAG 2 cut(s) 257, 305
BsaHI GRCGYC 1 cut(s) 707
BsaJI CCNNGG 2 cut(s) 121, 872
BsaWI WCCGGW 2 cut(s) 366, 1759
BsaXI ACNNNNNCTCC 6 cut(s) 176, 206, 577, 607, 634, 664
Bsc4I CCNNNNNNNGG 2 cut(s) 878, 1671
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 3 cut(s) 221, 262, 1445
Bse3DI GCAATG 1 cut(s) 1044
BseBI CCWGG 1 cut(s) 1029
BseDI CCNNGG 2 cut(s) 121, 872
BseGI GGATG 2 cut(s) 745, 1372
BseLI CCNNNNNNNGG 2 cut(s) 878, 1671
BseMI GCAATG 1 cut(s) 1044
BseMII CTCAG 4 cut(s) 131, 239, 737, 1702
BseNI ACTGG 3 cut(s) 221, 262, 1445
BseRI GAGGAG 5 cut(s) 101, 170, 763, 766, 889
BseXI GCAGC 3 cut(s) 113, 466, 1546
BseYI CCCAGC 1 cut(s) 1480
BsgI GTGCAG 1 cut(s) 1408
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 3 cut(s) 1019, 1348, 1443
BshTI ACCGGT 1 cut(s) 366
BsiHKAI GWGCWC 2 cut(s) 49, 560
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 3 cut(s) 159, 367, 1760
BslI CCNNNNNNNGG 2 cut(s) 878, 1671
BsmAI GTCTC 4 cut(s) 282, 750, 913, 1187
BsmBI CGTCTC 1 cut(s) 913
BsnI GGCC 3 cut(s) 1019, 1348, 1443
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 3 cut(s) 49, 95, 560
Bsp143I GATC 8 cut(s) 51, 387, 505, 684, 1007, 1024, 1291, 1336
BspACI CCGC 8 cut(s) 57, 118, 130, 146, 292, 963, 1665, 1684
BspANI GGCC 3 cut(s) 1019, 1348, 1443
BspCNI CTCAG 4 cut(s) 132, 238, 738, 1701
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 92, 335, 667
BspMI ACCTGC 2 cut(s) 316, 1640
BspOI GCTAGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 1015, 1019
BsrDI GCAATG 1 cut(s) 1044
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 3 cut(s) 221, 262, 1445
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 2 cut(s) 121, 872
BssMI GATC 8 cut(s) 51, 387, 505, 684, 1007, 1024, 1291, 1336
BssNI GRCGYC 1 cut(s) 707
Bst2UI CCWGG 1 cut(s) 1029
Bst4CI ACNGT 1 cut(s) 1875
Bst6I CTCTTC 2 cut(s) 845, 1480
BstACI GRCGYC 1 cut(s) 707
BstC8I GCNNGC 3 cut(s) 27, 1350, 1605
BstDEI CTNAG 6 cut(s) 140, 225, 746, 1115, 1460, 1688
BstF5I GGATG 2 cut(s) 745, 1372
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 680
BstHHI GCGC 2 cut(s) 679, 1609
BstKTI GATC 8 cut(s) 54, 390, 508, 687, 1010, 1027, 1294, 1339
BstMAI GTCTC 4 cut(s) 282, 750, 913, 1187
BstMBI GATC 8 cut(s) 51, 387, 505, 684, 1007, 1024, 1291, 1336
BstMWI GCNNNNNNNGC 6 cut(s) 14, 90, 126, 485, 742, 1531
BstNI CCWGG 1 cut(s) 1029
BstNSI RCATGY 2 cut(s) 1326, 1480
BstSCI CCNGG 1 cut(s) 1027
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 113, 466, 1546
BstV2I GAAGAC 3 cut(s) 407, 1158, 1409
BstX2I RGATCY 2 cut(s) 1291, 1336
BstYI RGATCY 2 cut(s) 1291, 1336
BsuRI GGCC 3 cut(s) 1019, 1348, 1443
BtgZI GCGATG 1 cut(s) 1520
BtsCI GGATG 2 cut(s) 745, 1372
BtsIMutI CAGTG 3 cut(s) 137, 383, 1017
BveI ACCTGC 2 cut(s) 316, 1640
Cac8I GCNNGC 3 cut(s) 27, 1350, 1605
CfoI GCGC 2 cut(s) 679, 1609
Cfr10I RCCGGY 1 cut(s) 366
Cfr13I GGNCC 4 cut(s) 333, 369, 666, 1442
CpoI CGGWCCG 1 cut(s) 369
CseI GACGC 1 cut(s) 696
Csp6I GTAC 3 cut(s) 364, 1256, 1623
CspAI ACCGGT 1 cut(s) 366
CspI CGGWCCG 1 cut(s) 369
CviAII CATG 8 cut(s) 87, 455, 509, 775, 1057, 1323, 1477, 1718
CviQI GTAC 3 cut(s) 364, 1256, 1623
DdeI CTNAG 6 cut(s) 140, 225, 746, 1115, 1460, 1688
DpnI GATC 8 cut(s) 53, 389, 507, 686, 1009, 1026, 1293, 1338
DpnII GATC 8 cut(s) 51, 387, 505, 684, 1007, 1024, 1291, 1336
DraI TTTAAA 1 cut(s) 1183
EaeI YGGCCR 1 cut(s) 1017
Eam1104I CTCTTC 2 cut(s) 845, 1480
EarI CTCTTC 2 cut(s) 845, 1480
Ecl136II GAGCTC 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 1348
Eco24I GRGCYC 2 cut(s) 49, 95
Eco32I GATATC 1 cut(s) 927
Eco47I GGWCC 3 cut(s) 333, 369, 666
Eco53kI GAGCTC 1 cut(s) 47
Eco57I CTGAAG 2 cut(s) 816, 951
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 1027
EcoRV GATATC 1 cut(s) 927
EcoT38I GRGCYC 2 cut(s) 49, 95
Esp3I CGTCTC 1 cut(s) 913
FaeI CATG 8 cut(s) 90, 458, 512, 778, 1060, 1326, 1480, 1721
FalI AAGNNNNNCTT 2 cut(s) 1638, 1670
FatI CATG 8 cut(s) 86, 454, 508, 774, 1056, 1322, 1476, 1717
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 2 cut(s) 387, 684
Fnu4HI GCNGC 6 cut(s) 127, 130, 480, 1560, 1665, 1684
FokI GGATG 2 cut(s) 752, 1379
FriOI GRGCYC 2 cut(s) 49, 95
Fsp4HI GCNGC 6 cut(s) 127, 130, 480, 1560, 1665, 1684
FspBI CTAG 3 cut(s) 26, 860, 1832
FspI TGCGCA 1 cut(s) 1608
GlaI GCGC 2 cut(s) 678, 1608
GluI GCNGC 6 cut(s) 127, 130, 480, 1560, 1665, 1684
GsaI CCCAGC 1 cut(s) 1484
HaeII RGCGCY 1 cut(s) 680
HaeIII GGCC 3 cut(s) 1019, 1348, 1443
HapII CCGG 3 cut(s) 159, 367, 1760
HgaI GACGC 1 cut(s) 696
HhaI GCGC 2 cut(s) 679, 1609
Hin1I GRCGYC 1 cut(s) 707
Hin1II CATG 8 cut(s) 90, 458, 512, 778, 1060, 1326, 1480, 1721
Hin6I GCGC 2 cut(s) 677, 1607
HinP1I GCGC 2 cut(s) 677, 1607
HindIII AAGCTT 3 cut(s) 6, 1550, 1794
HpaII CCGG 3 cut(s) 159, 367, 1760
HphI GGTGA 6 cut(s) 247, 614, 893, 1184, 1249, 1791
Hpy166II GTNNAC 1 cut(s) 364
Hpy188III TCNNGA 6 cut(s) 103, 331, 711, 1262, 1541, 1565
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 4 cut(s) 16, 158, 712, 1580
HpyAV CCTTC 8 cut(s) 105, 247, 791, 829, 931, 1234, 1238, 1523
HpyCH4III ACNGT 1 cut(s) 1875
HpyCH4IV ACGT 2 cut(s) 519, 1705
HpyCH4V TGCA 8 cut(s) 465, 762, 1037, 1224, 1379, 1389, 1644, 1813
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 90, 126, 485, 742, 1531
HpyF3I CTNAG 6 cut(s) 140, 225, 746, 1115, 1460, 1688
HpySE526I ACGT 2 cut(s) 519, 1705
Hsp92I GRCGYC 1 cut(s) 707
Hsp92II CATG 8 cut(s) 90, 458, 512, 778, 1060, 1326, 1480, 1721
HspAI GCGC 2 cut(s) 677, 1607
Ksp22I TGATCA 2 cut(s) 387, 684
Kzo9I GATC 8 cut(s) 51, 387, 505, 684, 1007, 1024, 1291, 1336
LmnI GCTCC 2 cut(s) 90, 874
Lsp1109I GCAGC 3 cut(s) 113, 466, 1546
LweI GCATC 6 cut(s) 301, 343, 1492, 1590, 1735, 1844
MaeI CTAG 3 cut(s) 26, 860, 1832
MaeII ACGT 2 cut(s) 519, 1705
MaeIII GTNAC 3 cut(s) 965, 1492, 1674
MalI GATC 8 cut(s) 53, 389, 507, 686, 1009, 1026, 1293, 1338
MboI GATC 8 cut(s) 51, 387, 505, 684, 1007, 1024, 1291, 1336
MfeI CAATTG 2 cut(s) 975, 1767
MflI RGATCY 2 cut(s) 1291, 1336
MhlI GDGCHC 3 cut(s) 49, 95, 560
MlyI GAGTC 5 cut(s) 40, 128, 151, 171, 529
MmeI TCCRAC 3 cut(s) 87, 1042, 1877
MroXI GAANNNNTTC 2 cut(s) 801, 1152
MseI TTAA 6 cut(s) 300, 660, 1182, 1418, 1695, 1779
MslI CAYNNNNRTG 1 cut(s) 1219
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 3 cut(s) 159, 367, 1760
MspR9I CCNGG 1 cut(s) 1029
MunI CAATTG 2 cut(s) 975, 1767
MvaI CCWGG 1 cut(s) 1029
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 6 cut(s) 14, 90, 126, 485, 742, 1531
NdeII GATC 8 cut(s) 51, 387, 505, 684, 1007, 1024, 1291, 1336
NheI GCTAGC 1 cut(s) 25
NlaIII CATG 8 cut(s) 90, 458, 512, 778, 1060, 1326, 1480, 1721
NlaIV GGNNCC 3 cut(s) 92, 335, 667
NmeAIII GCCGAG 3 cut(s) 68, 102, 183
NmuCI GTSAC 1 cut(s) 1492
NsbI TGCGCA 1 cut(s) 1608
NspI RCATGY 2 cut(s) 1326, 1480
PaeR7I CTCGAG 1 cut(s) 101
PceI AGGCCT 1 cut(s) 1348
PcsI WCGNNNNNNNCGW 2 cut(s) 40, 129
PdmI GAANNNNTTC 2 cut(s) 801, 1152
PfeI GAWTC 5 cut(s) 1074, 1111, 1712, 1756, 1786
PinAI ACCGGT 1 cut(s) 366
PkrI GCNGC 6 cut(s) 128, 131, 481, 1561, 1666, 1685
PleI GAGTC 5 cut(s) 39, 128, 150, 170, 529
PpsI GAGTC 5 cut(s) 39, 128, 150, 170, 529
PpuMI RGGWCCY 1 cut(s) 333
PshBI ATTAAT 1 cut(s) 660
PsiI TTATAA 1 cut(s) 1305
Psp124BI GAGCTC 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 1027
PspFI CCCAGC 1 cut(s) 1480
PspGI CCWGG 1 cut(s) 1027
PspN4I GGNNCC 3 cut(s) 92, 335, 667
PspPI GGNCC 4 cut(s) 333, 369, 666, 1442
PspPPI RGGWCCY 1 cut(s) 333
PsuI RGATCY 2 cut(s) 1291, 1336
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 3 cut(s) 365, 1257, 1624
RsaNI GTAC 3 cut(s) 364, 1256, 1623
RseI CAYNNNNRTG 1 cut(s) 1219
Rsr2I CGGWCCG 1 cut(s) 369
RsrII CGGWCCG 1 cut(s) 369
SacI GAGCTC 1 cut(s) 49
SaqAI TTAA 6 cut(s) 300, 660, 1182, 1418, 1695, 1779
SatI GCNGC 6 cut(s) 127, 130, 480, 1560, 1665, 1684
Sau3AI GATC 8 cut(s) 51, 387, 505, 684, 1007, 1024, 1291, 1336
Sau96I GGNCC 4 cut(s) 333, 369, 666, 1442
SchI GAGTC 5 cut(s) 40, 128, 151, 171, 529
ScrFI CCNGG 1 cut(s) 1029
SduI GDGCHC 3 cut(s) 49, 95, 560
SfaNI GCATC 6 cut(s) 301, 343, 1492, 1590, 1735, 1844
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 3 cut(s) 333, 369, 666
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 1219
SmlI CTYRAG 3 cut(s) 101, 272, 320
SmoI CTYRAG 3 cut(s) 101, 272, 320
SseBI AGGCCT 1 cut(s) 1348
SsiI CCGC 8 cut(s) 57, 118, 130, 146, 292, 963, 1665, 1684
SspMI CTAG 3 cut(s) 26, 860, 1832
SstI GAGCTC 1 cut(s) 49
StuI AGGCCT 1 cut(s) 1348
StyD4I CCNGG 1 cut(s) 1027
TaaI ACNGT 1 cut(s) 1875
TaiI ACGT 2 cut(s) 522, 1708
TaqI TCGA 8 cut(s) 34, 102, 168, 351, 504, 710, 805, 1575
TauI GCSGC 3 cut(s) 132, 1667, 1686
TfiI GAWTC 5 cut(s) 1074, 1111, 1712, 1756, 1786
Tru1I TTAA 6 cut(s) 300, 660, 1182, 1418, 1695, 1779
Tru9I TTAA 6 cut(s) 300, 660, 1182, 1418, 1695, 1779
TscAI CASTG 3 cut(s) 144, 390, 1017
TseFI GTSAC 1 cut(s) 1492
TseI GCWGC 3 cut(s) 126, 479, 1559
Tsp45I GTSAC 1 cut(s) 1492
TspDTI ATGAA 9 cut(s) 17, 543, 763, 863, 886, 1045, 1152, 1283, 1842
TspGWI ACGGA 3 cut(s) 361, 658, 937
TspRI CASTG 3 cut(s) 144, 390, 1017
VpaK11BI GGWCC 3 cut(s) 333, 369, 666
VspI ATTAAT 1 cut(s) 660
XapI RAATTY 1 cut(s) 1396
XceI RCATGY 2 cut(s) 1326, 1480
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
XhoI CTCGAG 1 cut(s) 101
XmnI GAANNNNTTC 2 cut(s) 801, 1152
XspI CTAG 3 cut(s) 26, 860, 1832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.