Prupe.3G308900_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
26895549 .. 26897998
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G308900.2

Sequence Viewer

Length: 1989 bp
ATGATCCAGACGGTGCGTTTCGAGCCATTCTTCTTGTATTGCTGTATCCGACACTCTCTTCCGTCAATGAAAACTTCATCCGCAACGGAGCTGGCAAGTCGAATAAGCCGAGTTCTAATCTCCGCTTCGAACCACACAAGGCCGACCCGCTCATGGAACCCTTCACTCGAGAACATTCTTCACCAGCTCGGTTGCCGCGACTCACTGAGTCCGTCACTCGTGGCCCGAGTTATCGACCCCTTCCTCCTCCCCCACCATTCACTCGCTCTCGGCTTCTTCAATTGGGCTTCCCAGCAACCATCGTTCTCTCACACCTCCATCACCTATAAATCCGTCCTCAAGTCTCTCTCTTTCTCCCGCCAATTCAACGCCATTGATGCTCTCCTCAAGCAAGTCAAAGCCCAGAAAATCGGCCTCGATGCTTCTGTTTATCGCTCCGTAATTGCTTCACTTATCATAGGAAGGAAAACCCACAACGCATTTCTGGTCTTTAGCGAGGTTTCCTCGCTAATTAAAGATATTGGGCACGAGATTTGTAACTCACTTCTGGCTGCTCTAGCTTGTGATGGATATTTTGAGTATGCCCAGAAGGTATTTGATGAAATGACTCTTAAGGCTATCCCTTTAAGCACTCTGGGGTTTGGTGTGTTTATATGGAGGCTCTGTGGACATGCTGAATTGGGTAAAACTTTGAGCATGTTAGATGAGGTTAGGAGAGGTGGTTCAGAAATTAACGGGTCAGTGACCGCGCTTTTGATCATTCACGGGTTTTGTCAGGCTTCGAGAGTGTCAGAGGCTTTCTGGGTATTGGATGAGCTGAGGAGTAGACAGTGCAAACCCGATTTCATGGCATATAGGATTGTCGCCGAAGCATTTCGATCGACTGGGAGTGTAGTTGATGTAGAAAAGGTTTTGAAGAAGAAGAGAAAGTTAGGTGTAGCTCCAAGGACTAACGATTATAGACAGTTTATATTTGATTTGATTTCAGAACGGCAGATATGTGAAGCAAAAGAATTGGGTGAAGTAATTATTAGCGGGAATTTTCCGATTGACGATGATGTTCTCAACGTGTTAATAGGATCAGTGTCGGCGATTGATCCTCTCTCTGCAATAGTGTTCTTCAGATTCATGATTGAAAAGCAGAGATTCCCAACTCTTTTGACTTTGTGCAATTTGAGCAGAAATCTATGTAAGCATAGCAATACCGATGAGTTGTTGGTAGTTTTTCAAGTTTTGGCTTCTGGCGACTATTTCAAAGATTTGGAGACTTACAATGTCATGGTGTCATTCTTGTGCAAAGCAGGGATGGTGAAAGAAGCATATGGGGTTCTTCAGGAGATGAAGAAAAAAGGGTTAGGCCCAGACGTTTCGACTTATAATTCTCTTATTGAAACATGTTGTAGAGAAGATTTATTGAGGCCTGCTAAAAGGTTATGGGATGAGATGTTTGCAAGTGGGTGCAGAGGAAACTTGAAGACTTACAATATCCTAATTCGGAAGTTTTCGGAAGTGGGTCAGGTTGATGAGGCACAAAGGCTCTTTTACCACATGTTGGGTAAAGGGGTTGCACCTGACGTGATGACATACACATCTCTACTTGAAGGGCTTTGCCAAGAAACGAAGCTTCAAGCTGCTTTCGATGTTTTCCGCAAGTCTGTTGAACAGGATTTTATGCTTGCACAAAATGTGCTGGGTACATTTACTCGCTCTTTGTGCAAAGCAGGTTTTTTTCTTGATGCTTCTAAGTTACTATGCGGCCTCAGTAATGATGTAGCACAGTCAGATTCCCATGTAATTTTGCTGAAGTATTTAGCCGATGCTAAAGAGATTCCAGTTGCTATTGAACACGTTAAATGGGTTCAACAAACCTCACCCTCGATGTTGCAAATTGTATCAGCTGAACTTTTAGCATCCCTTTCTTCTTCTTCAAGACTAGAGCCCACTCGACAGTTGGTTCAAACAATTCAGGAAATATCAGGTCTCAAGTAA

Protein Analysis

663

Amino Acids

74.06

Weight (kDa)

8.51

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14080
fragaria_vesca FvH4_6g53850
malus_domestica MD09G1008000.v1.1
prunus_persica Prupe.3G308900_v2.0.a1 Prupe.3G308900_v2.0.a1
pyrus_communis pycom111g00640
rosa_chinensis RchiOBHm_Chr2g0175991
rosa_laevigata RLG00000022371
rosa_multiflora Rmu_sc0012513.1_g000006
rosa_roxburghii Rroxscaffold_2G00076880
rosa_rugosa Rorug02G0589200
rosa_samantha Rh2AG668400 Rh2BG679900 Rh2CG642800 Rh2DG693600
rosa_wichuraiana Rw2G054800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1377
Acc36I ACCTGC 1 cut(s) 1712
AccB7I CCANNNNNTGG 1 cut(s) 1552
AccBSI CCGCTC 1 cut(s) 150
AccI GTMKAC 1 cut(s) 826
AccII CGCG 2 cut(s) 198, 749
AciI CCGC 9 cut(s) 81, 123, 148, 196, 358, 747, 1035, 1648, 1755
AclWI GGATC 2 cut(s) 1087, 1091
AcsI RAATTY 1 cut(s) 1039
AcuI CTGAAG 3 cut(s) 1105, 1316, 1823
AfaI GTAC 1 cut(s) 1696
AfiI CCNNNNNNNGG 2 cut(s) 153, 1552
AflII CTTAAG 1 cut(s) 611
AflIII ACRYGT 4 cut(s) 1068, 1394, 1548, 1846
AjiI CACGTC 1 cut(s) 1576
AloI GAACNNNNNNTCC 2 cut(s) 706, 738
AluBI AGCT 8 cut(s) 91, 187, 560, 817, 941, 1624, 1631, 1898
AluI AGCT 8 cut(s) 91, 187, 560, 817, 941, 1624, 1631, 1898
Alw26I GTCTC 3 cut(s) 348, 1259, 1985
AlwI GGATC 2 cut(s) 1087, 1091
Ama87I CYCGRG 2 cut(s) 167, 225
AoxI GGCC 6 cut(s) 140, 222, 412, 1357, 1418, 1756
ApeKI GCWGC 2 cut(s) 551, 1631
ApoI RAATTY 1 cut(s) 1039
ArsI GACNNNNNNTTYG 2 cut(s) 736, 768
Asp700I GAANNNNTTC 1 cut(s) 873
AspLEI GCGC 1 cut(s) 751
AspS9I GGNCC 2 cut(s) 223, 1358
AsuHPI GGTGA 5 cut(s) 173, 313, 1031, 1321, 1863
AsuII TTCGAA 1 cut(s) 128
AvaI CYCGRG 2 cut(s) 167, 225
BaeGI GKGCMC 1 cut(s) 528
BanII GRGCYC 1 cut(s) 1941
BauI CACGAG 2 cut(s) 218, 527
BbsI GAAGAC 1 cut(s) 1481
BbvCI CCTCAGC 1 cut(s) 818
BbvI GCAGC 2 cut(s) 538, 1618
BccI CCATC 4 cut(s) 307, 326, 560, 1300
BceAI ACGGC 1 cut(s) 1007
BcgI CGANNNNNNTGC 2 cut(s) 861, 895
BciVI GTATCC 1 cut(s) 56
BclI TGATCA 1 cut(s) 756
BcoDI GTCTC 3 cut(s) 348, 1259, 1985
BfaI CTAG 2 cut(s) 557, 1934
BfrI CTTAAG 1 cut(s) 611
BfuAI ACCTGC 1 cut(s) 1712
BfuI GTATCC 1 cut(s) 56
BisI GCNGC 4 cut(s) 196, 552, 1632, 1756
BlsI GCNGC 4 cut(s) 197, 553, 1633, 1757
BmeT110I CYCGRG 2 cut(s) 167, 225
BmgBI CACGTC 1 cut(s) 1576
BmgT120I GGNCC 2 cut(s) 223, 1358
BmiI GGNNCC 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 894
BmsI GCATC 5 cut(s) 367, 409, 1726, 1807, 1919
BmuI ACTGGG 1 cut(s) 894
BpiI GAAGAC 1 cut(s) 1481
BplI GAGNNNNNCTC 2 cut(s) 488, 520
Bpu10I CCTNAGC 1 cut(s) 818
Bpu14I TTCGAA 1 cut(s) 128
BpuEI CTTGAG 3 cut(s) 323, 371, 1967
BsaI GGTCTC 1 cut(s) 1985
BsaJI CCNNGG 1 cut(s) 944
BsaXI ACNNNNNCTCC 4 cut(s) 649, 679, 706, 736
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 1552
Bse1I ACTGG 2 cut(s) 889, 1832
BseDI CCNNGG 1 cut(s) 944
BseGI GGATG 5 cut(s) 77, 817, 1311, 1444, 1910
BseLI CCNNNNNNNGG 2 cut(s) 153, 1552
BseMII CTCAG 3 cut(s) 197, 809, 1774
BseNI ACTGG 2 cut(s) 889, 1832
BseRI GAGGAG 3 cut(s) 236, 374, 835
BseSI GKGCMC 1 cut(s) 528
BseXI GCAGC 2 cut(s) 538, 1618
BseYI CCCAGC 2 cut(s) 291, 1690
BsgI GTGCAG 1 cut(s) 1480
Bsh1236I CGCG 2 cut(s) 198, 749
Bsh1285I CGRYCG 1 cut(s) 881
BshFI GGCC 6 cut(s) 142, 224, 414, 1359, 1420, 1758
BsiEI CGRYCG 1 cut(s) 881
BsiHKCI CYCGRG 2 cut(s) 167, 225
BslI CCNNNNNNNGG 2 cut(s) 153, 1552
BsmAI GTCTC 3 cut(s) 348, 1259, 1985
BsnI GGCC 6 cut(s) 142, 224, 414, 1359, 1420, 1758
Bso31I GGTCTC 1 cut(s) 1985
BsoBI CYCGRG 2 cut(s) 167, 225
Bsp119I TTCGAA 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 528, 1941
Bsp143I GATC 5 cut(s) 3, 756, 878, 1079, 1096
BspACI CCGC 9 cut(s) 81, 123, 148, 196, 358, 747, 1035, 1648, 1755
BspANI GGCC 6 cut(s) 142, 224, 414, 1359, 1420, 1758
BspCNI CTCAG 3 cut(s) 198, 810, 1773
BspFNI CGCG 2 cut(s) 198, 749
BspHI TCATGA 1 cut(s) 1128
BspLI GGNNCC 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 1712
BspPI GGATC 2 cut(s) 1087, 1091
BspT104I TTCGAA 1 cut(s) 128
BspTI CTTAAG 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 1985
BsrBI CCGCTC 1 cut(s) 150
BsrI ACTGG 2 cut(s) 889, 1832
BssECI CCNNGG 1 cut(s) 944
BssMI GATC 5 cut(s) 3, 756, 878, 1079, 1096
BssSI CACGAG 2 cut(s) 218, 527
BssT1I CCWWGG 1 cut(s) 944
Bst2BI CACGAG 2 cut(s) 218, 527
Bst4CI ACNGT 5 cut(s) 13, 831, 966, 1779, 1950
Bst6I CTCTTC 2 cut(s) 63, 917
BstAFI CTTAAG 1 cut(s) 611
BstBI TTCGAA 1 cut(s) 128
BstC8I GCNNGC 3 cut(s) 93, 1422, 1677
BstDEI CTNAG 4 cut(s) 206, 818, 1743, 1760
BstF5I GGATG 5 cut(s) 77, 817, 1311, 1444, 1910
BstFNI CGCG 2 cut(s) 198, 749
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 5 cut(s) 6, 759, 881, 1082, 1099
BstMAI GTCTC 3 cut(s) 348, 1259, 1985
BstMBI GATC 5 cut(s) 3, 756, 878, 1079, 1096
BstMCI CGRYCG 1 cut(s) 881
BstMWI GCNNNNNNNGC 5 cut(s) 22, 377, 557, 1176, 1713
BstNSI RCATGY 4 cut(s) 674, 700, 1398, 1552
BstSLI GKGCMC 1 cut(s) 528
BstUI CGCG 2 cut(s) 198, 749
BstV1I GCAGC 2 cut(s) 538, 1618
BstV2I GAAGAC 1 cut(s) 1481
BsuI GTATCC 1 cut(s) 56
BsuRI GGCC 6 cut(s) 142, 224, 414, 1359, 1420, 1758
BtrI CACGTC 1 cut(s) 1576
BtsCI GGATG 5 cut(s) 77, 817, 1311, 1444, 1910
BtsIMutI CAGTG 4 cut(s) 203, 747, 836, 1089
BveI ACCTGC 1 cut(s) 1712
Cac8I GCNNGC 3 cut(s) 93, 1422, 1677
CciI TCATGA 1 cut(s) 1128
CfoI GCGC 1 cut(s) 751
Cfr13I GGNCC 2 cut(s) 223, 1358
Csp6I GTAC 1 cut(s) 1695
CviAII CATG 9 cut(s) 153, 671, 697, 847, 1129, 1279, 1395, 1549, 1790
CviQI GTAC 1 cut(s) 1695
DdeI CTNAG 4 cut(s) 206, 818, 1743, 1760
DpnI GATC 5 cut(s) 5, 758, 880, 1081, 1098
DpnII GATC 5 cut(s) 3, 756, 878, 1079, 1096
Eam1104I CTCTTC 2 cut(s) 63, 917
EarI CTCTTC 2 cut(s) 63, 917
Eco130I CCWWGG 1 cut(s) 944
Eco147I AGGCCT 1 cut(s) 1420
Eco24I GRGCYC 1 cut(s) 1941
Eco31I GGTCTC 1 cut(s) 1985
Eco57I CTGAAG 3 cut(s) 1105, 1316, 1823
Eco88I CYCGRG 2 cut(s) 167, 225
EcoT14I CCWWGG 1 cut(s) 944
EcoT38I GRGCYC 1 cut(s) 1941
ErhI CCWWGG 1 cut(s) 944
FaeI CATG 9 cut(s) 156, 674, 700, 850, 1132, 1282, 1398, 1552, 1793
FatI CATG 9 cut(s) 152, 670, 696, 846, 1128, 1278, 1394, 1548, 1789
FauI CCCGC 3 cut(s) 155, 365, 1028
FauNDI CATATG 1 cut(s) 1321
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 1 cut(s) 826
Fnu4HI GCNGC 4 cut(s) 196, 552, 1632, 1756
FokI GGATG 5 cut(s) 64, 824, 1318, 1451, 1897
FriOI GRGCYC 1 cut(s) 1941
Fsp4HI GCNGC 4 cut(s) 196, 552, 1632, 1756
FspBI CTAG 2 cut(s) 557, 1934
GlaI GCGC 1 cut(s) 750
GluI GCNGC 4 cut(s) 196, 552, 1632, 1756
GsaI CCCAGC 2 cut(s) 295, 1694
HaeIII GGCC 6 cut(s) 142, 224, 414, 1359, 1420, 1758
HhaI GCGC 1 cut(s) 751
Hin1II CATG 9 cut(s) 156, 674, 700, 850, 1132, 1282, 1398, 1552, 1793
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HindIII AAGCTT 1 cut(s) 1622
HinfI GANTC 7 cut(s) 200, 208, 607, 1125, 1146, 1784, 1828
HphI GGTGA 5 cut(s) 173, 313, 1031, 1321, 1863
Hpy166II GTNNAC 2 cut(s) 668, 827
Hpy188I TCNGA 9 cut(s) 50, 727, 793, 988, 1047, 1124, 1497, 1507, 1783
Hpy188III TCNNGA 8 cut(s) 7, 169, 783, 1129, 1334, 1733, 1929, 1967
Hpy8I GTNNAC 2 cut(s) 668, 827
HpyAV CCTTC 5 cut(s) 171, 250, 456, 583, 1595
HpyCH4III ACNGT 5 cut(s) 13, 831, 966, 1779, 1950
HpyCH4IV ACGT 4 cut(s) 1068, 1365, 1575, 1848
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 377, 557, 1176, 1713
HpyF3I CTNAG 4 cut(s) 206, 818, 1743, 1760
HpySE526I ACGT 4 cut(s) 1068, 1365, 1575, 1848
Hsp92II CATG 9 cut(s) 156, 674, 700, 850, 1132, 1282, 1398, 1552, 1793
HspAI GCGC 1 cut(s) 749
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 5 cut(s) 3, 756, 878, 1079, 1096
LmnI GCTCC 3 cut(s) 88, 440, 946
Lsp1109I GCAGC 2 cut(s) 538, 1618
LweI GCATC 5 cut(s) 367, 409, 1726, 1807, 1919
MaeI CTAG 2 cut(s) 557, 1934
MaeII ACGT 4 cut(s) 1068, 1365, 1575, 1848
MaeIII GTNAC 4 cut(s) 213, 536, 742, 1746
MalI GATC 5 cut(s) 5, 758, 880, 1081, 1098
MbiI CCGCTC 1 cut(s) 150
MboI GATC 5 cut(s) 3, 756, 878, 1079, 1096
MfeI CAATTG 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 528, 1941
MlyI GAGTC 3 cut(s) 194, 217, 601
MmeI TCCRAC 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 873
MseI TTAA 6 cut(s) 513, 612, 626, 732, 1073, 1851
MslI CAYNNNNRTG 1 cut(s) 1291
MspA1I CMGCKG 1 cut(s) 1898
MspCI CTTAAG 1 cut(s) 611
MunI CAATTG 1 cut(s) 280
MvnI CGCG 2 cut(s) 198, 749
MwoI GCNNNNNNNGC 5 cut(s) 22, 377, 557, 1176, 1713
NdeI CATATG 1 cut(s) 1321
NdeII GATC 5 cut(s) 3, 756, 878, 1079, 1096
NlaIII CATG 9 cut(s) 156, 674, 700, 850, 1132, 1282, 1398, 1552, 1793
NlaIV GGNNCC 1 cut(s) 158
NmeAIII GCCGAG 2 cut(s) 134, 249
NmuCI GTSAC 2 cut(s) 213, 742
NspI RCATGY 4 cut(s) 674, 700, 1398, 1552
NspV TTCGAA 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 167
PagI TCATGA 1 cut(s) 1128
PceI AGGCCT 1 cut(s) 1420
PciI ACATGT 2 cut(s) 1394, 1548
PcsI WCGNNNNNNNCGW 2 cut(s) 106, 195
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 4 cut(s) 1125, 1146, 1784, 1828
PflMI CCANNNNNTGG 1 cut(s) 1552
PkrI GCNGC 4 cut(s) 197, 553, 1633, 1757
Ple19I CGATCG 1 cut(s) 881
PleI GAGTC 3 cut(s) 194, 216, 601
PpsI GAGTC 3 cut(s) 194, 216, 601
PscI ACATGT 2 cut(s) 1394, 1548
PsiI TTATAA 1 cut(s) 1377
PspFI CCCAGC 2 cut(s) 291, 1690
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 223, 1358
PvuI CGATCG 1 cut(s) 881
PvuII CAGCTG 1 cut(s) 1898
RsaI GTAC 1 cut(s) 1696
RsaNI GTAC 1 cut(s) 1695
RseI CAYNNNNRTG 1 cut(s) 1291
SaqAI TTAA 6 cut(s) 513, 612, 626, 732, 1073, 1851
SatI GCNGC 4 cut(s) 196, 552, 1632, 1756
Sau3AI GATC 5 cut(s) 3, 756, 878, 1079, 1096
Sau96I GGNCC 2 cut(s) 223, 1358
SchI GAGTC 3 cut(s) 194, 217, 601
SduI GDGCHC 2 cut(s) 528, 1941
SfaNI GCATC 5 cut(s) 367, 409, 1726, 1807, 1919
Sfr274I CTCGAG 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 1291
SmlI CTYRAG 5 cut(s) 167, 338, 386, 611, 1982
SmoI CTYRAG 5 cut(s) 167, 338, 386, 611, 1982
SseBI AGGCCT 1 cut(s) 1420
SsiI CCGC 9 cut(s) 81, 123, 148, 196, 358, 747, 1035, 1648, 1755
SspMI CTAG 2 cut(s) 557, 1934
StuI AGGCCT 1 cut(s) 1420
StyI CCWWGG 1 cut(s) 944
TaaI ACNGT 5 cut(s) 13, 831, 966, 1779, 1950
TaiI ACGT 4 cut(s) 1071, 1368, 1578, 1851
TauI GCSGC 2 cut(s) 198, 1758
TfiI GAWTC 4 cut(s) 1125, 1146, 1784, 1828
Tru1I TTAA 6 cut(s) 513, 612, 626, 732, 1073, 1851
Tru9I TTAA 6 cut(s) 513, 612, 626, 732, 1073, 1851
TscAI CASTG 4 cut(s) 210, 747, 836, 1089
TseFI GTSAC 2 cut(s) 213, 742
TseI GCWGC 2 cut(s) 551, 1631
Tsp45I GTSAC 2 cut(s) 213, 742
TspDTI ATGAA 6 cut(s) 66, 83, 615, 835, 1117, 1355
TspGWI ACGGA 5 cut(s) 51, 101, 201, 322, 427
TspRI CASTG 4 cut(s) 210, 747, 836, 1089
Van91I CCANNNNNTGG 1 cut(s) 1552
Vha464I CTTAAG 1 cut(s) 611
XapI RAATTY 1 cut(s) 1039
XceI RCATGY 4 cut(s) 674, 700, 1398, 1552
XcmI CCANNNNNNNNNTGG 1 cut(s) 1948
XhoI CTCGAG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 826
XmnI GAANNNNTTC 1 cut(s) 873
XspI CTAG 2 cut(s) 557, 1934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.