Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14080 |
| fragaria_vesca | FvH4_6g53850 |
| malus_domestica | MD09G1008000.v1.1 |
| prunus_persica | Prupe.3G308900_v2.0.a1 Prupe.3G308900_v2.0.a1 |
| pyrus_communis | pycom111g00640 |
| rosa_chinensis | RchiOBHm_Chr2g0175991 |
| rosa_laevigata | RLG00000022371 |
| rosa_multiflora | Rmu_sc0012513.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00076880 |
| rosa_rugosa | Rorug02G0589200 |
| rosa_samantha | Rh2AG668400 Rh2BG679900 Rh2CG642800 Rh2DG693600 |
| rosa_wichuraiana | Rw2G054800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1377 |
| Acc36I | ACCTGC | 1 cut(s) | 1712 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1552 |
| AccBSI | CCGCTC | 1 cut(s) | 150 |
| AccI | GTMKAC | 1 cut(s) | 826 |
| AccII | CGCG | 2 cut(s) | 198, 749 |
| AciI | CCGC | 9 cut(s) | 81, 123, 148, 196, 358, 747, 1035, 1648, 1755 |
| AclWI | GGATC | 2 cut(s) | 1087, 1091 |
| AcsI | RAATTY | 1 cut(s) | 1039 |
| AcuI | CTGAAG | 3 cut(s) | 1105, 1316, 1823 |
| AfaI | GTAC | 1 cut(s) | 1696 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 153, 1552 |
| AflII | CTTAAG | 1 cut(s) | 611 |
| AflIII | ACRYGT | 4 cut(s) | 1068, 1394, 1548, 1846 |
| AjiI | CACGTC | 1 cut(s) | 1576 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 706, 738 |
| AluBI | AGCT | 8 cut(s) | 91, 187, 560, 817, 941, 1624, 1631, 1898 |
| AluI | AGCT | 8 cut(s) | 91, 187, 560, 817, 941, 1624, 1631, 1898 |
| Alw26I | GTCTC | 3 cut(s) | 348, 1259, 1985 |
| AlwI | GGATC | 2 cut(s) | 1087, 1091 |
| Ama87I | CYCGRG | 2 cut(s) | 167, 225 |
| AoxI | GGCC | 6 cut(s) | 140, 222, 412, 1357, 1418, 1756 |
| ApeKI | GCWGC | 2 cut(s) | 551, 1631 |
| ApoI | RAATTY | 1 cut(s) | 1039 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 736, 768 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 873 |
| AspLEI | GCGC | 1 cut(s) | 751 |
| AspS9I | GGNCC | 2 cut(s) | 223, 1358 |
| AsuHPI | GGTGA | 5 cut(s) | 173, 313, 1031, 1321, 1863 |
| AsuII | TTCGAA | 1 cut(s) | 128 |
| AvaI | CYCGRG | 2 cut(s) | 167, 225 |
| BaeGI | GKGCMC | 1 cut(s) | 528 |
| BanII | GRGCYC | 1 cut(s) | 1941 |
| BauI | CACGAG | 2 cut(s) | 218, 527 |
| BbsI | GAAGAC | 1 cut(s) | 1481 |
| BbvCI | CCTCAGC | 1 cut(s) | 818 |
| BbvI | GCAGC | 2 cut(s) | 538, 1618 |
| BccI | CCATC | 4 cut(s) | 307, 326, 560, 1300 |
| BceAI | ACGGC | 1 cut(s) | 1007 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 861, 895 |
| BciVI | GTATCC | 1 cut(s) | 56 |
| BclI | TGATCA | 1 cut(s) | 756 |
| BcoDI | GTCTC | 3 cut(s) | 348, 1259, 1985 |
| BfaI | CTAG | 2 cut(s) | 557, 1934 |
| BfrI | CTTAAG | 1 cut(s) | 611 |
| BfuAI | ACCTGC | 1 cut(s) | 1712 |
| BfuI | GTATCC | 1 cut(s) | 56 |
| BisI | GCNGC | 4 cut(s) | 196, 552, 1632, 1756 |
| BlsI | GCNGC | 4 cut(s) | 197, 553, 1633, 1757 |
| BmeT110I | CYCGRG | 2 cut(s) | 167, 225 |
| BmgBI | CACGTC | 1 cut(s) | 1576 |
| BmgT120I | GGNCC | 2 cut(s) | 223, 1358 |
| BmiI | GGNNCC | 1 cut(s) | 158 |
| BmrI | ACTGGG | 1 cut(s) | 894 |
| BmsI | GCATC | 5 cut(s) | 367, 409, 1726, 1807, 1919 |
| BmuI | ACTGGG | 1 cut(s) | 894 |
| BpiI | GAAGAC | 1 cut(s) | 1481 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 488, 520 |
| Bpu10I | CCTNAGC | 1 cut(s) | 818 |
| Bpu14I | TTCGAA | 1 cut(s) | 128 |
| BpuEI | CTTGAG | 3 cut(s) | 323, 371, 1967 |
| BsaI | GGTCTC | 1 cut(s) | 1985 |
| BsaJI | CCNNGG | 1 cut(s) | 944 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 649, 679, 706, 736 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 153, 1552 |
| Bse1I | ACTGG | 2 cut(s) | 889, 1832 |
| BseDI | CCNNGG | 1 cut(s) | 944 |
| BseGI | GGATG | 5 cut(s) | 77, 817, 1311, 1444, 1910 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 153, 1552 |
| BseMII | CTCAG | 3 cut(s) | 197, 809, 1774 |
| BseNI | ACTGG | 2 cut(s) | 889, 1832 |
| BseRI | GAGGAG | 3 cut(s) | 236, 374, 835 |
| BseSI | GKGCMC | 1 cut(s) | 528 |
| BseXI | GCAGC | 2 cut(s) | 538, 1618 |
| BseYI | CCCAGC | 2 cut(s) | 291, 1690 |
| BsgI | GTGCAG | 1 cut(s) | 1480 |
| Bsh1236I | CGCG | 2 cut(s) | 198, 749 |
| Bsh1285I | CGRYCG | 1 cut(s) | 881 |
| BshFI | GGCC | 6 cut(s) | 142, 224, 414, 1359, 1420, 1758 |
| BsiEI | CGRYCG | 1 cut(s) | 881 |
| BsiHKCI | CYCGRG | 2 cut(s) | 167, 225 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 153, 1552 |
| BsmAI | GTCTC | 3 cut(s) | 348, 1259, 1985 |
| BsnI | GGCC | 6 cut(s) | 142, 224, 414, 1359, 1420, 1758 |
| Bso31I | GGTCTC | 1 cut(s) | 1985 |
| BsoBI | CYCGRG | 2 cut(s) | 167, 225 |
| Bsp119I | TTCGAA | 1 cut(s) | 128 |
| Bsp1286I | GDGCHC | 2 cut(s) | 528, 1941 |
| Bsp143I | GATC | 5 cut(s) | 3, 756, 878, 1079, 1096 |
| BspACI | CCGC | 9 cut(s) | 81, 123, 148, 196, 358, 747, 1035, 1648, 1755 |
| BspANI | GGCC | 6 cut(s) | 142, 224, 414, 1359, 1420, 1758 |
| BspCNI | CTCAG | 3 cut(s) | 198, 810, 1773 |
| BspFNI | CGCG | 2 cut(s) | 198, 749 |
| BspHI | TCATGA | 1 cut(s) | 1128 |
| BspLI | GGNNCC | 1 cut(s) | 158 |
| BspMI | ACCTGC | 1 cut(s) | 1712 |
| BspPI | GGATC | 2 cut(s) | 1087, 1091 |
| BspT104I | TTCGAA | 1 cut(s) | 128 |
| BspTI | CTTAAG | 1 cut(s) | 611 |
| BspTNI | GGTCTC | 1 cut(s) | 1985 |
| BsrBI | CCGCTC | 1 cut(s) | 150 |
| BsrI | ACTGG | 2 cut(s) | 889, 1832 |
| BssECI | CCNNGG | 1 cut(s) | 944 |
| BssMI | GATC | 5 cut(s) | 3, 756, 878, 1079, 1096 |
| BssSI | CACGAG | 2 cut(s) | 218, 527 |
| BssT1I | CCWWGG | 1 cut(s) | 944 |
| Bst2BI | CACGAG | 2 cut(s) | 218, 527 |
| Bst4CI | ACNGT | 5 cut(s) | 13, 831, 966, 1779, 1950 |
| Bst6I | CTCTTC | 2 cut(s) | 63, 917 |
| BstAFI | CTTAAG | 1 cut(s) | 611 |
| BstBI | TTCGAA | 1 cut(s) | 128 |
| BstC8I | GCNNGC | 3 cut(s) | 93, 1422, 1677 |
| BstDEI | CTNAG | 4 cut(s) | 206, 818, 1743, 1760 |
| BstF5I | GGATG | 5 cut(s) | 77, 817, 1311, 1444, 1910 |
| BstFNI | CGCG | 2 cut(s) | 198, 749 |
| BstHHI | GCGC | 1 cut(s) | 751 |
| BstKTI | GATC | 5 cut(s) | 6, 759, 881, 1082, 1099 |
| BstMAI | GTCTC | 3 cut(s) | 348, 1259, 1985 |
| BstMBI | GATC | 5 cut(s) | 3, 756, 878, 1079, 1096 |
| BstMCI | CGRYCG | 1 cut(s) | 881 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 22, 377, 557, 1176, 1713 |
| BstNSI | RCATGY | 4 cut(s) | 674, 700, 1398, 1552 |
| BstSLI | GKGCMC | 1 cut(s) | 528 |
| BstUI | CGCG | 2 cut(s) | 198, 749 |
| BstV1I | GCAGC | 2 cut(s) | 538, 1618 |
| BstV2I | GAAGAC | 1 cut(s) | 1481 |
| BsuI | GTATCC | 1 cut(s) | 56 |
| BsuRI | GGCC | 6 cut(s) | 142, 224, 414, 1359, 1420, 1758 |
| BtrI | CACGTC | 1 cut(s) | 1576 |
| BtsCI | GGATG | 5 cut(s) | 77, 817, 1311, 1444, 1910 |
| BtsIMutI | CAGTG | 4 cut(s) | 203, 747, 836, 1089 |
| BveI | ACCTGC | 1 cut(s) | 1712 |
| Cac8I | GCNNGC | 3 cut(s) | 93, 1422, 1677 |
| CciI | TCATGA | 1 cut(s) | 1128 |
| CfoI | GCGC | 1 cut(s) | 751 |
| Cfr13I | GGNCC | 2 cut(s) | 223, 1358 |
| Csp6I | GTAC | 1 cut(s) | 1695 |
| CviAII | CATG | 9 cut(s) | 153, 671, 697, 847, 1129, 1279, 1395, 1549, 1790 |
| CviQI | GTAC | 1 cut(s) | 1695 |
| DdeI | CTNAG | 4 cut(s) | 206, 818, 1743, 1760 |
| DpnI | GATC | 5 cut(s) | 5, 758, 880, 1081, 1098 |
| DpnII | GATC | 5 cut(s) | 3, 756, 878, 1079, 1096 |
| Eam1104I | CTCTTC | 2 cut(s) | 63, 917 |
| EarI | CTCTTC | 2 cut(s) | 63, 917 |
| Eco130I | CCWWGG | 1 cut(s) | 944 |
| Eco147I | AGGCCT | 1 cut(s) | 1420 |
| Eco24I | GRGCYC | 1 cut(s) | 1941 |
| Eco31I | GGTCTC | 1 cut(s) | 1985 |
| Eco57I | CTGAAG | 3 cut(s) | 1105, 1316, 1823 |
| Eco88I | CYCGRG | 2 cut(s) | 167, 225 |
| EcoT14I | CCWWGG | 1 cut(s) | 944 |
| EcoT38I | GRGCYC | 1 cut(s) | 1941 |
| ErhI | CCWWGG | 1 cut(s) | 944 |
| FaeI | CATG | 9 cut(s) | 156, 674, 700, 850, 1132, 1282, 1398, 1552, 1793 |
| FatI | CATG | 9 cut(s) | 152, 670, 696, 846, 1128, 1278, 1394, 1548, 1789 |
| FauI | CCCGC | 3 cut(s) | 155, 365, 1028 |
| FauNDI | CATATG | 1 cut(s) | 1321 |
| FbaI | TGATCA | 1 cut(s) | 756 |
| FblI | GTMKAC | 1 cut(s) | 826 |
| Fnu4HI | GCNGC | 4 cut(s) | 196, 552, 1632, 1756 |
| FokI | GGATG | 5 cut(s) | 64, 824, 1318, 1451, 1897 |
| FriOI | GRGCYC | 1 cut(s) | 1941 |
| Fsp4HI | GCNGC | 4 cut(s) | 196, 552, 1632, 1756 |
| FspBI | CTAG | 2 cut(s) | 557, 1934 |
| GlaI | GCGC | 1 cut(s) | 750 |
| GluI | GCNGC | 4 cut(s) | 196, 552, 1632, 1756 |
| GsaI | CCCAGC | 2 cut(s) | 295, 1694 |
| HaeIII | GGCC | 6 cut(s) | 142, 224, 414, 1359, 1420, 1758 |
| HhaI | GCGC | 1 cut(s) | 751 |
| Hin1II | CATG | 9 cut(s) | 156, 674, 700, 850, 1132, 1282, 1398, 1552, 1793 |
| Hin6I | GCGC | 1 cut(s) | 749 |
| HinP1I | GCGC | 1 cut(s) | 749 |
| HindIII | AAGCTT | 1 cut(s) | 1622 |
| HinfI | GANTC | 7 cut(s) | 200, 208, 607, 1125, 1146, 1784, 1828 |
| HphI | GGTGA | 5 cut(s) | 173, 313, 1031, 1321, 1863 |
| Hpy166II | GTNNAC | 2 cut(s) | 668, 827 |
| Hpy188I | TCNGA | 9 cut(s) | 50, 727, 793, 988, 1047, 1124, 1497, 1507, 1783 |
| Hpy188III | TCNNGA | 8 cut(s) | 7, 169, 783, 1129, 1334, 1733, 1929, 1967 |
| Hpy8I | GTNNAC | 2 cut(s) | 668, 827 |
| HpyAV | CCTTC | 5 cut(s) | 171, 250, 456, 583, 1595 |
| HpyCH4III | ACNGT | 5 cut(s) | 13, 831, 966, 1779, 1950 |
| HpyCH4IV | ACGT | 4 cut(s) | 1068, 1365, 1575, 1848 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 22, 377, 557, 1176, 1713 |
| HpyF3I | CTNAG | 4 cut(s) | 206, 818, 1743, 1760 |
| HpySE526I | ACGT | 4 cut(s) | 1068, 1365, 1575, 1848 |
| Hsp92II | CATG | 9 cut(s) | 156, 674, 700, 850, 1132, 1282, 1398, 1552, 1793 |
| HspAI | GCGC | 1 cut(s) | 749 |
| Ksp22I | TGATCA | 1 cut(s) | 756 |
| Kzo9I | GATC | 5 cut(s) | 3, 756, 878, 1079, 1096 |
| LmnI | GCTCC | 3 cut(s) | 88, 440, 946 |
| Lsp1109I | GCAGC | 2 cut(s) | 538, 1618 |
| LweI | GCATC | 5 cut(s) | 367, 409, 1726, 1807, 1919 |
| MaeI | CTAG | 2 cut(s) | 557, 1934 |
| MaeII | ACGT | 4 cut(s) | 1068, 1365, 1575, 1848 |
| MaeIII | GTNAC | 4 cut(s) | 213, 536, 742, 1746 |
| MalI | GATC | 5 cut(s) | 5, 758, 880, 1081, 1098 |
| MbiI | CCGCTC | 1 cut(s) | 150 |
| MboI | GATC | 5 cut(s) | 3, 756, 878, 1079, 1096 |
| MfeI | CAATTG | 1 cut(s) | 280 |
| MhlI | GDGCHC | 2 cut(s) | 528, 1941 |
| MlyI | GAGTC | 3 cut(s) | 194, 217, 601 |
| MmeI | TCCRAC | 1 cut(s) | 73 |
| MroXI | GAANNNNTTC | 1 cut(s) | 873 |
| MseI | TTAA | 6 cut(s) | 513, 612, 626, 732, 1073, 1851 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1291 |
| MspA1I | CMGCKG | 1 cut(s) | 1898 |
| MspCI | CTTAAG | 1 cut(s) | 611 |
| MunI | CAATTG | 1 cut(s) | 280 |
| MvnI | CGCG | 2 cut(s) | 198, 749 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 22, 377, 557, 1176, 1713 |
| NdeI | CATATG | 1 cut(s) | 1321 |
| NdeII | GATC | 5 cut(s) | 3, 756, 878, 1079, 1096 |
| NlaIII | CATG | 9 cut(s) | 156, 674, 700, 850, 1132, 1282, 1398, 1552, 1793 |
| NlaIV | GGNNCC | 1 cut(s) | 158 |
| NmeAIII | GCCGAG | 2 cut(s) | 134, 249 |
| NmuCI | GTSAC | 2 cut(s) | 213, 742 |
| NspI | RCATGY | 4 cut(s) | 674, 700, 1398, 1552 |
| NspV | TTCGAA | 1 cut(s) | 128 |
| PaeR7I | CTCGAG | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 1128 |
| PceI | AGGCCT | 1 cut(s) | 1420 |
| PciI | ACATGT | 2 cut(s) | 1394, 1548 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 106, 195 |
| PdmI | GAANNNNTTC | 1 cut(s) | 873 |
| PfeI | GAWTC | 4 cut(s) | 1125, 1146, 1784, 1828 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1552 |
| PkrI | GCNGC | 4 cut(s) | 197, 553, 1633, 1757 |
| Ple19I | CGATCG | 1 cut(s) | 881 |
| PleI | GAGTC | 3 cut(s) | 194, 216, 601 |
| PpsI | GAGTC | 3 cut(s) | 194, 216, 601 |
| PscI | ACATGT | 2 cut(s) | 1394, 1548 |
| PsiI | TTATAA | 1 cut(s) | 1377 |
| PspFI | CCCAGC | 2 cut(s) | 291, 1690 |
| PspN4I | GGNNCC | 1 cut(s) | 158 |
| PspPI | GGNCC | 2 cut(s) | 223, 1358 |
| PvuI | CGATCG | 1 cut(s) | 881 |
| PvuII | CAGCTG | 1 cut(s) | 1898 |
| RsaI | GTAC | 1 cut(s) | 1696 |
| RsaNI | GTAC | 1 cut(s) | 1695 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1291 |
| SaqAI | TTAA | 6 cut(s) | 513, 612, 626, 732, 1073, 1851 |
| SatI | GCNGC | 4 cut(s) | 196, 552, 1632, 1756 |
| Sau3AI | GATC | 5 cut(s) | 3, 756, 878, 1079, 1096 |
| Sau96I | GGNCC | 2 cut(s) | 223, 1358 |
| SchI | GAGTC | 3 cut(s) | 194, 217, 601 |
| SduI | GDGCHC | 2 cut(s) | 528, 1941 |
| SfaNI | GCATC | 5 cut(s) | 367, 409, 1726, 1807, 1919 |
| Sfr274I | CTCGAG | 1 cut(s) | 167 |
| SfuI | TTCGAA | 1 cut(s) | 128 |
| SlaI | CTCGAG | 1 cut(s) | 167 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1291 |
| SmlI | CTYRAG | 5 cut(s) | 167, 338, 386, 611, 1982 |
| SmoI | CTYRAG | 5 cut(s) | 167, 338, 386, 611, 1982 |
| SseBI | AGGCCT | 1 cut(s) | 1420 |
| SsiI | CCGC | 9 cut(s) | 81, 123, 148, 196, 358, 747, 1035, 1648, 1755 |
| SspMI | CTAG | 2 cut(s) | 557, 1934 |
| StuI | AGGCCT | 1 cut(s) | 1420 |
| StyI | CCWWGG | 1 cut(s) | 944 |
| TaaI | ACNGT | 5 cut(s) | 13, 831, 966, 1779, 1950 |
| TaiI | ACGT | 4 cut(s) | 1071, 1368, 1578, 1851 |
| TauI | GCSGC | 2 cut(s) | 198, 1758 |
| TfiI | GAWTC | 4 cut(s) | 1125, 1146, 1784, 1828 |
| Tru1I | TTAA | 6 cut(s) | 513, 612, 626, 732, 1073, 1851 |
| Tru9I | TTAA | 6 cut(s) | 513, 612, 626, 732, 1073, 1851 |
| TscAI | CASTG | 4 cut(s) | 210, 747, 836, 1089 |
| TseFI | GTSAC | 2 cut(s) | 213, 742 |
| TseI | GCWGC | 2 cut(s) | 551, 1631 |
| Tsp45I | GTSAC | 2 cut(s) | 213, 742 |
| TspDTI | ATGAA | 6 cut(s) | 66, 83, 615, 835, 1117, 1355 |
| TspGWI | ACGGA | 5 cut(s) | 51, 101, 201, 322, 427 |
| TspRI | CASTG | 4 cut(s) | 210, 747, 836, 1089 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1552 |
| Vha464I | CTTAAG | 1 cut(s) | 611 |
| XapI | RAATTY | 1 cut(s) | 1039 |
| XceI | RCATGY | 4 cut(s) | 674, 700, 1398, 1552 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1948 |
| XhoI | CTCGAG | 1 cut(s) | 167 |
| XmiI | GTMKAC | 1 cut(s) | 826 |
| XmnI | GAANNNNTTC | 1 cut(s) | 873 |
| XspI | CTAG | 2 cut(s) | 557, 1934 |