Rorug02G0589200

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
71118567 .. 71120084
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0589200.1

Sequence Viewer

Length: 1518 bp
ATGGTTCGGCTTCCAATCCCACCCGCCAAAACCTGTAATTCAAACTTTGGCTCCAAGAAGCACCAATGTCTCTTCCTCCTCAACCTCTGCCTCTCCTTCAAACCCTTCTCTCAGATTCACGCCCAAATCCAACTCTCTGGCCTCCACAGAGACCCCTACCTCCTCACCCAACTCATCCGCTTCTGCGCTTTATCTCCCGCCAAAAACTTCACCTACGCTCGAACCCTCCTCCACCACTCCCATGCTTCGCCGCCGTCTTCCTGGAACTTCCTCATCCGAGGCTACGCCTCCAGTGACTCCCCCAGAGAGGCCATCTGGGCTTTTCGCGCAATGCTCCGCCGTGGAGTTAGGCCCAACAAGCTTACATTCCCTTTTCTTCTCAAGTCCTGCGCCATGGTCCCGGCGCTGAAAGAAGGGAGGCAAGCTCATGGATATGTTTTCAAGTTGGGTTTGGACTGTGATTTGTATGTTCAGAACAATTTGGTTCATTTTTATGGGGATTGCAAGAAGATCAAGGACGCAGTAAAGGTGTTCGATGGAATGTCTGAGAGGAGCGTTGTTTCGTGGAATGCGGTTGTGACCGCTTGCGTTGATAATTTGCGGTTGAGTGATGGGATTGTATATTTTTTGAAGATGAGGGAGTGTGGGTTTGAGCCGGATGAGACTACGATGGTGGTCGTGTTGAATGCGTGCTCCGAGCTTGGGAACTTGAGCTTAGGACGAGGGGTTCACTCCTATGTAATTGCGAGGGGCTTGGTCTTGAATTGTCAGTTGGGTACTGCGCTTGTCGACATGTATGCGAAATCTGGGGCTTTGGGTTATGCCAGGTTGCTTTTTGATAGAATGGAGGGGCGGAATGTGTGGACATGGAGTGCAATGATTCTAGGCCTAGCTCAGCATGGGTTTGCCAAGGAAGCGCTTGAGCTTTTCCCAAAGATGTTGAACTCTTCGATATGCCCAAATTATGTCACATTTCTCGGAGTCCTCTGTGCTTGTAGCCACGCTGGACTGGTGGATGATGGATACCGATACTTTCATGAAATGGAACATGTTTATGGAATTACACCTATGATGATACATTATGGTGTCATGGTGGATATCTTAGGGCGTTCTGGCCGTCTGAAGGAGGCTTATAGATTCATGAAGAGCATGCCCTTTGAACCTGATCCCATCATATGCAGAACATTGCTTAGTGCATGCAGTACTCATGATGTAAATGACGAACTAGGGGTAGGAAATAAAGTTAGAGAGAAATTGCTTGAATTGGAGCCGAGTAGGAGTGGGAATTTTGTGATGGTGGCAAACTTTTTGGCTGAAACTGGTATGTGGGACAAAGCAGCCAATTTGAGGAAGGTCATGAAAGAAAAACGGATGAAGAAGAGGGCAGGGGAGAGCAGCGTTGAGTTGGGCGGATCCATCCATAAGTTCTTTTCTGGCTATGATTCTCATTCTGACTATGAGGATATCTATCGGATACTAGATATATTGAGCTTGCACATGAAGTTGGTTGACATGTAG

Protein Analysis

505

Amino Acids

56.88

Weight (kDa)

8.92

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 87 - 131 1.2e-07 PPR repeat family
PPR_2 PF13041 185 - 232 2e-06 PPR repeat family
PPR_2 PF13041 286 - 333 5.2e-06 PPR repeat family
E_motif PF20431 409 - 468 4.7e-12 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14080
fragaria_vesca FvH4_6g53850
malus_domestica MD09G1008000.v1.1
prunus_persica Prupe.3G308900_v2.0.a1 Prupe.3G308900_v2.0.a1
pyrus_communis pycom111g00640
rosa_chinensis RchiOBHm_Chr2g0175991
rosa_laevigata RLG00000022371
rosa_multiflora Rmu_sc0012513.1_g000006
rosa_roxburghii Rroxscaffold_2G00076880
rosa_rugosa Rorug02G0589200
rosa_samantha Rh2AG668400 Rh2BG679900 Rh2CG642800 Rh2DG693600
rosa_wichuraiana Rw2G054800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 789
AccII CGCG 1 cut(s) 327
AclWI GGATC 3 cut(s) 1160, 1407, 1420
AcoI YGGCCR 1 cut(s) 1114
AcsI RAATTY 1 cut(s) 1285
AcuI CTGAAG 1 cut(s) 1142
AfaI GTAC 2 cut(s) 778, 1204
AfeI AGCGCT 1 cut(s) 918
AfiI CCNNNNNNNGG 4 cut(s) 307, 702, 1123, 1347
AflIII ACRYGT 3 cut(s) 792, 1048, 1512
AgsI TTSAA 9 cut(s) 42, 100, 442, 631, 685, 763, 943, 1160, 1262
AjnI CCWGG 2 cut(s) 260, 824
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AloI GAACNNNNNNTCC 2 cut(s) 711, 743
AluBI AGCT 7 cut(s) 361, 425, 700, 714, 893, 925, 1491
AluI AGCT 7 cut(s) 361, 425, 700, 714, 893, 925, 1491
Alw21I GWGCWC 1 cut(s) 695
Alw26I GTCTC 3 cut(s) 74, 144, 656
AlwI GGATC 3 cut(s) 1160, 1407, 1420
Aor51HI AGCGCT 1 cut(s) 918
AoxI GGCC 5 cut(s) 139, 309, 350, 886, 1114
ApeKI GCWGC 2 cut(s) 1337, 1395
ApoI RAATTY 1 cut(s) 1285
AspLEI GCGC 6 cut(s) 188, 329, 392, 406, 784, 919
AspS9I GGNCC 2 cut(s) 351, 397
AsuC2I CCSGG 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 157, 202
AvaII GGWCC 1 cut(s) 397
BamHI GGATCC 1 cut(s) 1412
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 695
BbvI GCAGC 2 cut(s) 1349, 1407
BccI CCATC 8 cut(s) 320, 530, 605, 664, 1013, 1178, 1288, 1424
BceAI ACGGC 3 cut(s) 238, 324, 1101
BcgI CGANNNNNNTGC 2 cut(s) 779, 813
BciT130I CCWGG 2 cut(s) 262, 826
BciVI GTATCC 2 cut(s) 1016, 1467
BcnI CCSGG 1 cut(s) 401
BcoDI GTCTC 3 cut(s) 74, 144, 656
BfaI CTAG 4 cut(s) 884, 890, 1226, 1478
BfoI RGCGCY 2 cut(s) 407, 920
BfuI GTATCC 2 cut(s) 1016, 1467
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 3 cut(s) 251, 1338, 1396
BlpI GCTNAGC 1 cut(s) 894
BlsI GCNGC 3 cut(s) 252, 1339, 1397
BmcAI AGTACT 1 cut(s) 1204
Bme1390I CCNGG 3 cut(s) 262, 401, 826
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 351, 397
BmiI GGNNCC 4 cut(s) 52, 399, 1269, 1414
BmrFI CCNGG 3 cut(s) 262, 401, 826
BpiI GAAGAC 1 cut(s) 249
BplI GAGNNNNNCTC 2 cut(s) 409, 441
BpmI CTGGAG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 715
Bpu1102I GCTNAGC 1 cut(s) 894
BpuEI CTTGAG 3 cut(s) 365, 730, 941
BpuMI CCSGG 1 cut(s) 401
BsaBI GATNNNNATC 1 cut(s) 1467
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 4 cut(s) 277, 340, 393, 909
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 632, 662
Bsc4I CCNNNNNNNGG 4 cut(s) 307, 702, 1123, 1347
Bse1I ACTGG 3 cut(s) 291, 1014, 1324
Bse3DI GCAATG 3 cut(s) 336, 882, 1184
Bse8I GATNNNNATC 1 cut(s) 1467
BseBI CCWGG 2 cut(s) 262, 826
BseDI CCNNGG 4 cut(s) 277, 340, 393, 909
BseGI GGATG 6 cut(s) 174, 273, 664, 1021, 1377, 1416
BseJI GATNNNNATC 1 cut(s) 1467
BseLI CCNNNNNNNGG 4 cut(s) 307, 702, 1123, 1347
BseMI GCAATG 3 cut(s) 336, 882, 1184
BseMII CTCAG 3 cut(s) 125, 537, 908
BseNI ACTGG 3 cut(s) 291, 1014, 1324
BseRI GAGGAG 4 cut(s) 68, 152, 218, 565
BseXI GCAGC 2 cut(s) 1349, 1407
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 5 cut(s) 141, 311, 352, 888, 1116
BsiHKAI GWGCWC 1 cut(s) 695
BsiSI CCGG 2 cut(s) 401, 656
BslFI GGGAC 2 cut(s) 383, 1343
BslI CCNNNNNNNGG 4 cut(s) 307, 702, 1123, 1347
BsmAI GTCTC 3 cut(s) 74, 144, 656
BsmFI GGGAC 2 cut(s) 383, 1343
BsmI GAATGC 2 cut(s) 574, 691
BsnI GGCC 5 cut(s) 141, 311, 352, 888, 1116
Bso31I GGTCTC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 695
Bsp143I GATC 3 cut(s) 510, 1165, 1412
Bsp1720I GCTNAGC 1 cut(s) 894
Bsp19I CCATGG 1 cut(s) 393
BspANI GGCC 5 cut(s) 141, 311, 352, 888, 1116
BspCNI CTCAG 3 cut(s) 124, 538, 907
BspFNI CGCG 1 cut(s) 327
BspHI TCATGA 4 cut(s) 1036, 1140, 1207, 1356
BspLI GGNNCC 4 cut(s) 52, 399, 1269, 1414
BspPI GGATC 3 cut(s) 1160, 1407, 1420
BspQI GCTCTTC 1 cut(s) 1139
BspTNI GGTCTC 1 cut(s) 144
BsrDI GCAATG 3 cut(s) 336, 882, 1184
BsrI ACTGG 3 cut(s) 291, 1014, 1324
BssECI CCNNGG 4 cut(s) 277, 340, 393, 909
BssMI GATC 3 cut(s) 510, 1165, 1412
BssT1I CCWWGG 2 cut(s) 393, 909
Bst2UI CCWGG 2 cut(s) 262, 826
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 4 cut(s) 77, 952, 1139, 1373
BstC8I GCNNGC 6 cut(s) 423, 586, 691, 1151, 1198, 1493
BstDEI CTNAG 6 cut(s) 111, 546, 715, 894, 1102, 1190
BstDSI CCRYGG 2 cut(s) 340, 393
BstF5I GGATG 6 cut(s) 174, 273, 664, 1021, 1377, 1416
BstFNI CGCG 1 cut(s) 327
BstH2I RGCGCY 2 cut(s) 407, 920
BstHHI GCGC 6 cut(s) 188, 329, 392, 406, 784, 919
BstKTI GATC 3 cut(s) 513, 1168, 1415
BstMAI GTCTC 3 cut(s) 74, 144, 656
BstMBI GATC 3 cut(s) 510, 1165, 1412
BstMWI GCNNNNNNNGC 4 cut(s) 317, 326, 358, 914
BstNI CCWGG 2 cut(s) 262, 826
BstNSI RCATGY 5 cut(s) 796, 1052, 1153, 1200, 1516
BstSCI CCNGG 3 cut(s) 260, 399, 824
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 2 cut(s) 1349, 1407
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 1412
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 1 cut(s) 1412
BsuI GTATCC 2 cut(s) 1016, 1467
BsuRI GGCC 5 cut(s) 141, 311, 352, 888, 1116
BtgI CCRYGG 2 cut(s) 340, 393
BtsCI GGATG 6 cut(s) 174, 273, 664, 1021, 1377, 1416
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 6 cut(s) 423, 586, 691, 1151, 1198, 1493
CciI TCATGA 4 cut(s) 1036, 1140, 1207, 1356
CfoI GCGC 6 cut(s) 188, 329, 392, 406, 784, 919
Cfr13I GGNCC 2 cut(s) 351, 397
CseI GACGC 1 cut(s) 527
Csp6I GTAC 2 cut(s) 777, 1203
CviQI GTAC 2 cut(s) 777, 1203
DdeI CTNAG 6 cut(s) 111, 546, 715, 894, 1102, 1190
DpnI GATC 3 cut(s) 512, 1167, 1414
DpnII GATC 3 cut(s) 510, 1165, 1412
EaeI YGGCCR 1 cut(s) 1114
Eam1104I CTCTTC 4 cut(s) 77, 952, 1139, 1373
EarI CTCTTC 4 cut(s) 77, 952, 1139, 1373
EciI GGCGGA 3 cut(s) 326, 868, 1425
Eco130I CCWWGG 2 cut(s) 393, 909
Eco147I AGGCCT 1 cut(s) 888
Eco31I GGTCTC 1 cut(s) 144
Eco32I GATATC 2 cut(s) 1099, 1465
Eco47I GGWCC 1 cut(s) 397
Eco47III AGCGCT 1 cut(s) 918
Eco57I CTGAAG 1 cut(s) 1142
EcoRII CCWGG 2 cut(s) 260, 824
EcoRV GATATC 2 cut(s) 1099, 1465
EcoT14I CCWWGG 2 cut(s) 393, 909
ErhI CCWWGG 2 cut(s) 393, 909
FaqI GGGAC 2 cut(s) 383, 1343
FauI CCCGC 2 cut(s) 31, 205
FauNDI CATATG 1 cut(s) 1175
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 3 cut(s) 251, 1338, 1396
FokI GGATG 6 cut(s) 161, 260, 671, 1028, 1384, 1403
Fsp4HI GCNGC 3 cut(s) 251, 1338, 1396
FspBI CTAG 4 cut(s) 884, 890, 1226, 1478
GlaI GCGC 6 cut(s) 187, 328, 391, 405, 783, 918
GluI GCNGC 3 cut(s) 251, 1338, 1396
GsuI CTGGAG 1 cut(s) 274
HaeII RGCGCY 2 cut(s) 407, 920
HaeIII GGCC 5 cut(s) 141, 311, 352, 888, 1116
HapII CCGG 2 cut(s) 401, 656
HgaI GACGC 1 cut(s) 527
HhaI GCGC 6 cut(s) 188, 329, 392, 406, 784, 919
Hin6I GCGC 6 cut(s) 186, 327, 390, 404, 782, 917
HinP1I GCGC 6 cut(s) 186, 327, 390, 404, 782, 917
HincII GTYRAC 2 cut(s) 790, 1510
HindII GTYRAC 2 cut(s) 790, 1510
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 6 cut(s) 115, 296, 880, 981, 1137, 1442
HpaII CCGG 2 cut(s) 401, 656
HphI GGTGA 2 cut(s) 157, 202
Hpy166II GTNNAC 4 cut(s) 730, 790, 864, 1510
Hpy188I TCNGA 9 cut(s) 114, 278, 474, 547, 697, 980, 1122, 1453, 1473
Hpy188III TCNNGA 5 cut(s) 760, 1037, 1141, 1208, 1357
Hpy8I GTNNAC 4 cut(s) 730, 790, 864, 1510
HpyAV CCTTC 5 cut(s) 106, 115, 407, 1117, 1345
HpyCH4III ACNGT 1 cut(s) 458
HpyCH4V TGCA 6 cut(s) 504, 875, 1179, 1196, 1200, 1495
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 326, 358, 914
HpyF3I CTNAG 6 cut(s) 111, 546, 715, 894, 1102, 1190
HspAI GCGC 6 cut(s) 186, 327, 390, 404, 782, 917
Kzo9I GATC 3 cut(s) 510, 1165, 1412
LguI GCTCTTC 1 cut(s) 1139
LmnI GCTCC 5 cut(s) 56, 339, 552, 698, 1267
Lsp1109I GCAGC 2 cut(s) 1349, 1407
MaeI CTAG 4 cut(s) 884, 890, 1226, 1478
MaeIII GTNAC 3 cut(s) 293, 577, 967
MalI GATC 3 cut(s) 512, 1167, 1414
MboI GATC 3 cut(s) 510, 1165, 1412
MboII GAAGA 9 cut(s) 64, 249, 368, 520, 643, 939, 1156, 1387, 1390
MflI RGATCY 1 cut(s) 1412
MhlI GDGCHC 1 cut(s) 695
MlyI GAGTC 2 cut(s) 290, 990
MmeI TCCRAC 1 cut(s) 154
MslI CAYNNNNRTG 6 cut(s) 240, 432, 492, 735, 1053, 1083
MspI CCGG 2 cut(s) 401, 656
MspR9I CCNGG 3 cut(s) 262, 401, 826
Mva1269I GAATGC 2 cut(s) 574, 691
MvaI CCWGG 2 cut(s) 262, 826
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 4 cut(s) 317, 326, 358, 914
NciI CCSGG 1 cut(s) 401
NcoI CCATGG 1 cut(s) 393
NdeI CATATG 1 cut(s) 1175
NdeII GATC 3 cut(s) 510, 1165, 1412
NlaIV GGNNCC 4 cut(s) 52, 399, 1269, 1414
NmeAIII GCCGAG 1 cut(s) 1296
NmuCI GTSAC 3 cut(s) 293, 577, 967
NspI RCATGY 5 cut(s) 796, 1052, 1153, 1200, 1516
PaeI GCATGC 2 cut(s) 1153, 1200
PagI TCATGA 4 cut(s) 1036, 1140, 1207, 1356
PceI AGGCCT 1 cut(s) 888
PciI ACATGT 3 cut(s) 792, 1048, 1512
PciSI GCTCTTC 1 cut(s) 1139
PctI GAATGC 2 cut(s) 574, 691
PfeI GAWTC 4 cut(s) 115, 880, 1137, 1442
PfoI TCCNGGA 1 cut(s) 260
PkrI GCNGC 3 cut(s) 252, 1339, 1397
PleI GAGTC 2 cut(s) 290, 989
PpsI GAGTC 2 cut(s) 290, 989
PscI ACATGT 3 cut(s) 792, 1048, 1512
Psp6I CCWGG 2 cut(s) 260, 824
PspGI CCWGG 2 cut(s) 260, 824
PspN4I GGNNCC 4 cut(s) 52, 399, 1269, 1414
PspPI GGNCC 2 cut(s) 351, 397
PsuI RGATCY 1 cut(s) 1412
RsaI GTAC 2 cut(s) 778, 1204
RsaNI GTAC 2 cut(s) 777, 1203
RseI CAYNNNNRTG 6 cut(s) 240, 432, 492, 735, 1053, 1083
SalI GTCGAC 1 cut(s) 788
SapI GCTCTTC 1 cut(s) 1139
SatI GCNGC 3 cut(s) 251, 1338, 1396
Sau3AI GATC 3 cut(s) 510, 1165, 1412
Sau96I GGNCC 2 cut(s) 351, 397
ScaI AGTACT 1 cut(s) 1204
SchI GAGTC 2 cut(s) 290, 990
ScrFI CCNGG 3 cut(s) 262, 401, 826
SduI GDGCHC 1 cut(s) 695
SinI GGWCC 1 cut(s) 397
SmiMI CAYNNNNRTG 6 cut(s) 240, 432, 492, 735, 1053, 1083
SmlI CTYRAG 3 cut(s) 380, 709, 920
SmoI CTYRAG 3 cut(s) 380, 709, 920
SphI GCATGC 2 cut(s) 1153, 1200
SseBI AGGCCT 1 cut(s) 888
SspMI CTAG 4 cut(s) 884, 890, 1226, 1478
StuI AGGCCT 1 cut(s) 888
StyD4I CCNGG 3 cut(s) 260, 399, 824
StyI CCWWGG 2 cut(s) 393, 909
TaaI ACNGT 1 cut(s) 458
TaqI TCGA 4 cut(s) 220, 534, 789, 950
TatI WGTACW 1 cut(s) 1202
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 4 cut(s) 115, 880, 1137, 1442
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 3 cut(s) 293, 577, 967
TseI GCWGC 2 cut(s) 1337, 1395
Tsp45I GTSAC 3 cut(s) 293, 577, 967
TspDTI ATGAA 8 cut(s) 476, 1025, 1053, 1129, 1157, 1373, 1388, 1514
TspGWI ACGGA 1 cut(s) 1384
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 397
XapI RAATTY 1 cut(s) 1285
XceI RCATGY 5 cut(s) 796, 1052, 1153, 1200, 1516
XmiI GTMKAC 1 cut(s) 789
XspI CTAG 4 cut(s) 884, 890, 1226, 1478
ZrmI AGTACT 1 cut(s) 1204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.