Rroxscaffold_2G00076880

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015220
Physical Location & Seq
Reverse (-)
575784 .. 578282
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076880.1

Sequence Viewer

Length: 1893 bp
ATGAAAGCTCCGTCGGCAACCGAGTTAGCGAGTCGAATAAGCCGAGTTCTGATCTCCGCTTCCAACAACACAAGGCCGACTCGCTCATGGAACCCTTCACTCGAGAACGCTCTTCACCGCCTCGGTTGCCGCGACTCACTGAGTCCACAACTCGTCGCCCGAGTCATCGATCCTTTCCTCCTCAACCACCACTCCCTCGCTCTCGGCTTCTTCAACTGGGCTTCTCAGCAGCCGTCCTTCTCCCACACCTCCACCACCTACCAATCAGTCCTCAAGTCTCTTTCTTTTTCCCGCCAATTTTCCGCCATTGATGCTCTGCTCAAGCAAGTCAGAGCCCAGAGAATCGGCCTCGATGCATCGGTCTACCGCTCCGTGATTGCTTCACTCATCATAGGAAAGAAAACCCACAATGCCTTTTTGGTGTTCGGCGAGGTTGGGATTGAAGATATTGGGCATGAGATTTGCAACTCACTCTTGGCTGCCCTGGCTTCTGATGGGTATTTGGAGCATGCCCAGAAGCTATTTGATGAAATGACTCTGAGAGCTGTGCCTGTGAGCACCGCTGGATTTGGTGTGTTTGTGTGGCGGCTATGTGGAAACGCTGAATTGAGTAAGATATTGAGTATGTTAGATGAGGTTAGGAGGTGTGGTTGGTCGATCAATGGGTCCGTTGTAGCGCTTCTGATCATTCACGGGCTTTGTAGGGCTTCGAGAGTGTCAGAGGCTTTCTGGGTGCTGGATGAGCTGAGGAATAGAGAGTGCAAACCTGATTTCATGGCGTATAGGATTGTCGCTGAAGCTATTCGGTCAACTGGGAATGTGGTTGATACAGAAAAGGTTTTGAAGAAGAAGAGAAAGCTAGGTGTGGCTCCGAGGAGTAGTGATTATAGGGAGTTCATACTTGGGTTGATTTCGGAGAGACGGATATATGAAGCGAAAGAGTTGGGAGAAGTGATAGTTAGTGGGAACTTTCCAATCGAAAATGATGTTCTCAATGTGTTGATAGGGTCAGTGTCAACTATTGATCCTGGCTCTGCAATGATGTTTTTCAAGTTCATGGTTGGAAAAGCGAGCTTCCCAACTCTTTTGACATTGAGCAATTTGTGTAGGAATCTAAGTAGGCGTAGCAACTCTGATGAATTGCTGGACGTTTTTCAACTTTTGTCTTCTGGTGATTATTTTAAAGATTTGGAGACTTACAACGTGATGGTGTCATTCCTGTGCAAAGCAGGAATGGTGAAGGAAGCCTATGGGGTACTTCCAGAGATGAAGAAGAAAGGGTTAAACCCAGATCTTTCAACTTATAATTCTCTTATTGAAGCATGTTGTAGGGAAGATCTATTGAGGCCTGCTAAAAGGCTGTGGGATGAAATGTTTGCAAATGGGTGCAGAGGAAATTTGAAGACTTACAGTATCTTAATTCGTAAGTTTTCGGAAGTAGGCCCAGTTGATGAGGCTCTAAGGCTCTTTTACCACATGTTGGGAAGAGAAGTTACACCCGACGCGATGACTTACACAACTCTACTTGAAGGGCTTTGTCAAGACACAAAGCTTGAAGCTGCTTTGGAAGTTTTTGACAAGTGTGTTGAACAGGATTTGATGCTTGCCCAATCTTTGTTGGGTACATTTATCCTCTCTTTATGCAAAGCAGGTCTTTTTCTTGCCGCTTCTCGGTTACTCTGCCGCCTCAGTTTTGATATAGCACATTCAGATTCTCATGTAGTTTTGCTCAAGTGTTTAGCCGATGCTAAAGAGATTCCAGTGGCCATTGAACACATTAACTGGGTTCGCCAAGCTTCACCCTCCATGTTGCAAACTATTTCAAACGAACTAGCATCGACTTCTTCTTCTCCAACACCAGAGCCAATTTTACAGTTTCTTCAAACAATTTAG

Protein Analysis

630

Amino Acids

70.04

Weight (kDa)

7.83

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 396 - 444 6.2e-15 PPR repeat family
PPR_1 PF12854 396 - 424 1.8e-06 PPR repeat
PPR_3 PF13812 396 - 442 6.9e-07 Pentatricopeptide repeat domain
PPR PF01535 399 - 428 4.7e-07 PPR repeat
PPR_long PF17177 399 - 510 2.3e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 419 - 476 5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 426 - 458 5.5e-09 PPR repeat
PPR_2 PF13041 430 - 477 2.3e-12 PPR repeat family
PPR PF01535 433 - 463 6.1e-06 PPR repeat
PPR_2 PF13041 476 - 514 2.4e-07 PPR repeat family
PPR_1 PF12854 497 - 527 5.2e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14080
fragaria_vesca FvH4_6g53850
malus_domestica MD09G1008000.v1.1
prunus_persica Prupe.3G308900_v2.0.a1 Prupe.3G308900_v2.0.a1
pyrus_communis pycom111g00640
rosa_chinensis RchiOBHm_Chr2g0175991
rosa_laevigata RLG00000022371
rosa_multiflora Rmu_sc0012513.1_g000006
rosa_roxburghii Rroxscaffold_2G00076880
rosa_rugosa Rorug02G0589200
rosa_samantha Rh2AG668400 Rh2BG679900 Rh2CG642800 Rh2DG693600
rosa_wichuraiana Rw2G054800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1305
Acc36I ACCTGC 1 cut(s) 1640
AccB7I CCANNNNNTGG 1 cut(s) 1480
AccBSI CCGCTC 1 cut(s) 369
AccI GTMKAC 1 cut(s) 363
AccII CGCG 2 cut(s) 132, 1505
AclWI GGATC 2 cut(s) 164, 1019
AcoI YGGCCR 1 cut(s) 1764
AcsI RAATTY 1 cut(s) 1396
AcuI CTGAAG 1 cut(s) 816
AfaI GTAC 2 cut(s) 1257, 1624
AfeI AGCGCT 1 cut(s) 678
AfiI CCNNNNNNNGG 2 cut(s) 1480, 1671
AflIII ACRYGT 1 cut(s) 1476
AjnI CCWGG 2 cut(s) 483, 1027
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 3 cut(s) 282, 913, 1187
AlwI GGATC 2 cut(s) 164, 1019
Ama87I CYCGRG 2 cut(s) 101, 159
Aor51HI AGCGCT 1 cut(s) 678
AoxI GGCC 5 cut(s) 74, 346, 1346, 1441, 1764
ApeKI GCWGC 3 cut(s) 229, 479, 1559
ApoI RAATTY 1 cut(s) 1396
Asp700I GAANNNNTTC 1 cut(s) 801
AspLEI GCGC 1 cut(s) 679
AspS9I GGNCC 2 cut(s) 666, 1442
AsuHPI GGTGA 4 cut(s) 107, 1184, 1249, 1791
AvaI CYCGRG 2 cut(s) 101, 159
AvaII GGWCC 1 cut(s) 666
BalI TGGCCA 1 cut(s) 1766
BanII GRGCYC 1 cut(s) 337
BarI GAAGNNNNNNTAC 2 cut(s) 1477, 1509
BbsI GAAGAC 2 cut(s) 1158, 1409
Bbv12I GWGCWC 1 cut(s) 560
BbvCI CCTCAGC 1 cut(s) 746
BbvI GCAGC 3 cut(s) 241, 466, 1546
BccI CCATC 2 cut(s) 488, 1201
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 2 cut(s) 485, 1029
BclI TGATCA 1 cut(s) 684
BcoDI GTCTC 3 cut(s) 282, 913, 1187
BfaI CTAG 2 cut(s) 860, 1832
BfoI RGCGCY 1 cut(s) 680
BfuAI ACCTGC 1 cut(s) 1640
BglII AGATCT 2 cut(s) 1291, 1336
BisI GCNGC 7 cut(s) 130, 230, 480, 587, 1560, 1665, 1684
BlsI GCNGC 7 cut(s) 131, 231, 481, 588, 1561, 1666, 1685
Bme1390I CCNGG 2 cut(s) 485, 1029
Bme18I GGWCC 1 cut(s) 666
BmeT110I CYCGRG 2 cut(s) 101, 159
BmgT120I GGNCC 2 cut(s) 666, 1442
BmiI GGNNCC 3 cut(s) 92, 667, 870
BmrFI CCNGG 2 cut(s) 485, 1029
BmrI ACTGGG 4 cut(s) 226, 822, 1439, 1792
BmsI GCATC 6 cut(s) 301, 343, 365, 1590, 1735, 1844
BmuI ACTGGG 4 cut(s) 226, 822, 1439, 1792
BpiI GAAGAC 2 cut(s) 1158, 1409
Bpu10I CCTNAGC 1 cut(s) 746
BpuEI CTTGAG 3 cut(s) 257, 305, 1715
Bsa29I ATCGAT 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 121, 483, 872
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 634, 664
Bsc4I CCNNNNNNNGG 2 cut(s) 1480, 1671
Bse1I ACTGG 5 cut(s) 221, 817, 1445, 1760, 1787
Bse3DI GCAATG 1 cut(s) 1044
BseBI CCWGG 2 cut(s) 485, 1029
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 121, 483, 872
BseGI GGATG 2 cut(s) 745, 1372
BseLI CCNNNNNNNGG 2 cut(s) 1480, 1671
BseMI GCAATG 1 cut(s) 1044
BseMII CTCAG 5 cut(s) 131, 239, 530, 737, 1702
BseNI ACTGG 5 cut(s) 221, 817, 1445, 1760, 1787
BseRI GAGGAG 2 cut(s) 170, 889
BseXI GCAGC 3 cut(s) 241, 466, 1546
BsgI GTGCAG 1 cut(s) 1408
Bsh1236I CGCG 2 cut(s) 132, 1505
BshFI GGCC 5 cut(s) 76, 348, 1348, 1443, 1766
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 560
BsiHKCI CYCGRG 2 cut(s) 101, 159
BslI CCNNNNNNNGG 2 cut(s) 1480, 1671
BsmAI GTCTC 3 cut(s) 282, 913, 1187
BsmBI CGTCTC 1 cut(s) 913
BsnI GGCC 5 cut(s) 76, 348, 1348, 1443, 1766
BsoBI CYCGRG 2 cut(s) 101, 159
Bsp1286I GDGCHC 2 cut(s) 337, 560
Bsp143I GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
BspANI GGCC 5 cut(s) 76, 348, 1348, 1443, 1766
BspCNI CTCAG 5 cut(s) 132, 238, 531, 738, 1701
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 2 cut(s) 132, 1505
BspLI GGNNCC 3 cut(s) 92, 667, 870
BspMI ACCTGC 1 cut(s) 1640
BspPI GGATC 2 cut(s) 164, 1019
BspQI GCTCTTC 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 1044
BsrI ACTGG 5 cut(s) 221, 817, 1445, 1760, 1787
BssECI CCNNGG 3 cut(s) 121, 483, 872
BssMI GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
Bst2UI CCWGG 2 cut(s) 485, 1029
Bst4CI ACNGT 2 cut(s) 1412, 1875
Bst6I CTCTTC 3 cut(s) 117, 845, 1480
BstC8I GCNNGC 4 cut(s) 510, 1072, 1350, 1605
BstDEI CTNAG 7 cut(s) 140, 225, 539, 746, 1115, 1460, 1688
BstF5I GGATG 2 cut(s) 745, 1372
BstFNI CGCG 2 cut(s) 132, 1505
BstH2I RGCGCY 1 cut(s) 680
BstHHI GCGC 1 cut(s) 679
BstKTI GATC 7 cut(s) 54, 172, 660, 687, 1027, 1294, 1339
BstMAI GTCTC 3 cut(s) 282, 913, 1187
BstMBI GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
BstMWI GCNNNNNNNGC 5 cut(s) 14, 126, 311, 485, 742
BstNI CCWGG 2 cut(s) 485, 1029
BstNSI RCATGY 3 cut(s) 512, 1326, 1480
BstSCI CCNGG 2 cut(s) 483, 1027
BstUI CGCG 2 cut(s) 132, 1505
BstV1I GCAGC 3 cut(s) 241, 466, 1546
BstV2I GAAGAC 2 cut(s) 1158, 1409
BstX2I RGATCY 2 cut(s) 1291, 1336
BstYI RGATCY 2 cut(s) 1291, 1336
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 5 cut(s) 76, 348, 1348, 1443, 1766
BsuTUI ATCGAT 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 1520
BtsCI GGATG 2 cut(s) 745, 1372
BtsIMutI CAGTG 3 cut(s) 137, 1017, 1767
BveI ACCTGC 1 cut(s) 1640
Cac8I GCNNGC 4 cut(s) 510, 1072, 1350, 1605
CfoI GCGC 1 cut(s) 679
Cfr13I GGNCC 2 cut(s) 666, 1442
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 1 cut(s) 1511
Csp6I GTAC 2 cut(s) 1256, 1623
CviAII CATG 9 cut(s) 87, 455, 509, 775, 1057, 1323, 1477, 1718, 1807
CviQI GTAC 2 cut(s) 1256, 1623
DdeI CTNAG 7 cut(s) 140, 225, 539, 746, 1115, 1460, 1688
DpnI GATC 7 cut(s) 53, 171, 659, 686, 1026, 1293, 1338
DpnII GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
DraI TTTAAA 1 cut(s) 1183
EaeI YGGCCR 1 cut(s) 1764
Eam1104I CTCTTC 3 cut(s) 117, 845, 1480
EarI CTCTTC 3 cut(s) 117, 845, 1480
EciI GGCGGA 1 cut(s) 292
Eco147I AGGCCT 1 cut(s) 1348
Eco24I GRGCYC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 666
Eco47III AGCGCT 1 cut(s) 678
Eco57I CTGAAG 1 cut(s) 816
Eco88I CYCGRG 2 cut(s) 101, 159
EcoRII CCWGG 2 cut(s) 483, 1027
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 913
FaeI CATG 9 cut(s) 90, 458, 512, 778, 1060, 1326, 1480, 1721, 1810
FalI AAGNNNNNCTT 2 cut(s) 1638, 1670
FatI CATG 9 cut(s) 86, 454, 508, 774, 1056, 1322, 1476, 1717, 1806
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 1 cut(s) 684
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 7 cut(s) 130, 230, 480, 587, 1560, 1665, 1684
FokI GGATG 2 cut(s) 752, 1379
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 7 cut(s) 130, 230, 480, 587, 1560, 1665, 1684
FspBI CTAG 2 cut(s) 860, 1832
GlaI GCGC 1 cut(s) 678
GluI GCNGC 7 cut(s) 130, 230, 480, 587, 1560, 1665, 1684
HaeII RGCGCY 1 cut(s) 680
HaeIII GGCC 5 cut(s) 76, 348, 1348, 1443, 1766
HgaI GACGC 1 cut(s) 1511
HhaI GCGC 1 cut(s) 679
Hin1II CATG 9 cut(s) 90, 458, 512, 778, 1060, 1326, 1480, 1721, 1810
Hin6I GCGC 1 cut(s) 677
HinP1I GCGC 1 cut(s) 677
HincII GTYRAC 2 cut(s) 810, 1017
HindII GTYRAC 2 cut(s) 810, 1017
HindIII AAGCTT 2 cut(s) 1550, 1794
HphI GGTGA 4 cut(s) 107, 1184, 1249, 1791
Hpy166II GTNNAC 4 cut(s) 146, 364, 810, 1017
Hpy188III TCNNGA 4 cut(s) 103, 711, 1262, 1541
Hpy8I GTNNAC 4 cut(s) 146, 364, 810, 1017
Hpy99I CGWCG 3 cut(s) 16, 158, 1505
HpyAV CCTTC 4 cut(s) 105, 247, 1234, 1523
HpyCH4III ACNGT 2 cut(s) 1412, 1875
HpyCH4IV ACGT 2 cut(s) 1149, 1203
HpyCH4V TGCA 9 cut(s) 356, 465, 762, 1037, 1224, 1379, 1389, 1644, 1813
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 126, 311, 485, 742
HpyF3I CTNAG 7 cut(s) 140, 225, 539, 746, 1115, 1460, 1688
HpySE526I ACGT 2 cut(s) 1149, 1203
Hsp92II CATG 9 cut(s) 90, 458, 512, 778, 1060, 1326, 1480, 1721, 1810
HspAI GCGC 1 cut(s) 677
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 4 cut(s) 13, 374, 505, 874
Lsp1109I GCAGC 3 cut(s) 241, 466, 1546
LweI GCATC 6 cut(s) 301, 343, 365, 1590, 1735, 1844
MaeI CTAG 2 cut(s) 860, 1832
MaeII ACGT 2 cut(s) 1149, 1203
MaeIII GTNAC 2 cut(s) 1492, 1674
MalI GATC 7 cut(s) 53, 171, 659, 686, 1026, 1293, 1338
MbiI CCGCTC 1 cut(s) 369
MboI GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
MflI RGATCY 2 cut(s) 1291, 1336
MhlI GDGCHC 2 cut(s) 337, 560
MlsI TGGCCA 1 cut(s) 1766
MluCI AATT 9 cut(s) 296, 605, 1099, 1139, 1306, 1396, 1419, 1866, 1887
MluNI TGGCCA 1 cut(s) 1766
MlyI GAGTC 6 cut(s) 40, 73, 128, 151, 171, 529
MmeI TCCRAC 3 cut(s) 87, 1042, 1877
Mox20I TGGCCA 1 cut(s) 1766
Mph1103I ATGCAT 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 801
MscI TGGCCA 1 cut(s) 1766
MseI TTAA 4 cut(s) 1182, 1283, 1418, 1779
MslI CAYNNNNRTG 1 cut(s) 1219
Msp20I TGGCCA 1 cut(s) 1766
MspA1I CMGCKG 1 cut(s) 563
MspR9I CCNGG 2 cut(s) 485, 1029
MvaI CCWGG 2 cut(s) 485, 1029
MvnI CGCG 2 cut(s) 132, 1505
MwoI GCNNNNNNNGC 5 cut(s) 14, 126, 311, 485, 742
NdeII GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
NlaIII CATG 9 cut(s) 90, 458, 512, 778, 1060, 1326, 1480, 1721, 1810
NlaIV GGNNCC 3 cut(s) 92, 667, 870
NmeAIII GCCGAG 2 cut(s) 68, 183
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 3 cut(s) 512, 1326, 1480
PaeI GCATGC 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 101
PceI AGGCCT 1 cut(s) 1348
PciI ACATGT 1 cut(s) 1476
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 2 cut(s) 40, 129
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 4 cut(s) 342, 1111, 1712, 1756
PflMI CCANNNNNTGG 1 cut(s) 1480
PkrI GCNGC 7 cut(s) 131, 231, 481, 588, 1561, 1666, 1685
PleI GAGTC 6 cut(s) 39, 73, 128, 150, 170, 529
PpsI GAGTC 6 cut(s) 39, 73, 128, 150, 170, 529
PscI ACATGT 1 cut(s) 1476
PsiI TTATAA 1 cut(s) 1305
Psp6I CCWGG 2 cut(s) 483, 1027
PspGI CCWGG 2 cut(s) 483, 1027
PspN4I GGNNCC 3 cut(s) 92, 667, 870
PspPI GGNCC 2 cut(s) 666, 1442
PsuI RGATCY 2 cut(s) 1291, 1336
RsaI GTAC 2 cut(s) 1257, 1624
RsaNI GTAC 2 cut(s) 1256, 1623
RseI CAYNNNNRTG 1 cut(s) 1219
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 4 cut(s) 1182, 1283, 1418, 1779
SatI GCNGC 7 cut(s) 130, 230, 480, 587, 1560, 1665, 1684
Sau3AI GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
Sau96I GGNCC 2 cut(s) 666, 1442
SchI GAGTC 6 cut(s) 40, 73, 128, 151, 171, 529
ScrFI CCNGG 2 cut(s) 485, 1029
SduI GDGCHC 2 cut(s) 337, 560
SfaNI GCATC 6 cut(s) 301, 343, 365, 1590, 1735, 1844
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 666
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 1219
SmlI CTYRAG 4 cut(s) 101, 272, 320, 1730
SmoI CTYRAG 4 cut(s) 101, 272, 320, 1730
SphI GCATGC 1 cut(s) 512
Sse9I AATT 9 cut(s) 296, 605, 1099, 1139, 1306, 1396, 1419, 1866, 1887
SseBI AGGCCT 1 cut(s) 1348
SspMI CTAG 2 cut(s) 860, 1832
StuI AGGCCT 1 cut(s) 1348
StyD4I CCNGG 2 cut(s) 483, 1027
TaaI ACNGT 2 cut(s) 1412, 1875
TaiI ACGT 2 cut(s) 1152, 1206
TaqI TCGA 8 cut(s) 34, 102, 168, 351, 656, 710, 978, 1838
TaqII GACCGA 2 cut(s) 349, 795
TasI AATT 9 cut(s) 296, 605, 1099, 1139, 1306, 1396, 1419, 1866, 1887
TauI GCSGC 4 cut(s) 132, 589, 1667, 1686
TfiI GAWTC 4 cut(s) 342, 1111, 1712, 1756
Tru1I TTAA 4 cut(s) 1182, 1283, 1418, 1779
Tru9I TTAA 4 cut(s) 1182, 1283, 1418, 1779
TscAI CASTG 3 cut(s) 144, 1017, 1767
TseI GCWGC 3 cut(s) 229, 479, 1559
TspDTI ATGAA 9 cut(s) 17, 543, 763, 886, 945, 1045, 1152, 1283, 1383
TspGWI ACGGA 3 cut(s) 361, 658, 937
TspRI CASTG 3 cut(s) 144, 1017, 1767
Van91I CCANNNNNTGG 1 cut(s) 1480
VpaK11BI GGWCC 1 cut(s) 666
XapI RAATTY 1 cut(s) 1396
XceI RCATGY 3 cut(s) 512, 1326, 1480
XhoI CTCGAG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 801
XspI CTAG 2 cut(s) 860, 1832
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.