RLG00000022371

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015220
Physical Location & Seq
Forward (+)
82922458 .. 82924483
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022371

Sequence Viewer

Length: 1890 bp
ATGAAAGCTCCGTCGGCAACCGAGTTAGCGAGTCGAATAAGCCGAGTTCTGATCTCCGCTTCCAACAACACAAGGCCGACTCGCTCATGGAACCCTTCACTCGAGAACGCTCTTCACCGCCTCGGTTGCCGCGACCCACTGAGTCCACAACTCGTCGCCCGAGTCATCGATCCTTTCCTCCTCAACCACCACTCCCTCGCTCTCGGCTTCTTCAACTGGGCTTCTCAGCAACCCTCCTTCTCCCACACCTCCACCACCTACCAATCAATCCTCAAGTCTCTTTCTTTTTCCCGCCAATTTTCCGCCATGGATGCTCTGCTCAAGCAAGTGAGAGCCCAGAGAATCGGCCTCGATGCATCGGTCTATCGCTCCGTGATTGCTTCACTCATCATAGGAAAGAAAACCCACAATGCCTTTTTGGTGTTCGGCGAGGTTGGGATTGAAGATATTGGGCATGAGATTTGCAACTCACTCTTGGCTGCTCTGGCTTCTGATGGGTATTTGGAGCATGCCCAGAAGGTGTTTGATGAAATGACTCTGAGAGCTGTGCCTGTGAGCACCGCTGGATTTGGTGTGTTTGTGTGGCGGCTATGTGGAAACGCTGAATTGACTAAGATTTTGAGTATGTTAGATGAGGTTAGGAGGTGTGGTTGGTCGATCAATGGGTCCGTTGTAGCGCTTCTGATCATTCACGGGCTTTGTAGGGCTTCGAGAGTGTCAGAGGCTTTCTGGGTGCTGGATGAGCTGAGGAATAGAGAGTGCAAACCTGATTTCATGGCGTATAGGATTGTTGCTGAAGCTGTTCGGTCTACTGGGAATGTGGTTGATACAGAAAAGGTTTTGAAGAAGAAGAGAAAGCTAGGTGTGGCTCCGAGGAGTAGTGATTATAGGGAGTTCATACTTGGGTTGATTTCGGAGAGACGGATATATGAAGCGAAAGAGTTGGGAGAAGTGATAGTTAGTGGGAACTTTCCAATCGAAGATGATGTTCTCAATGTGTTGATAGGGTCAGTGTCAACTATTGATCCTGGCTCTGCAATGATGTTTTTCAAGTTCATGGTTGGAAAAGCGAGCTTCCCAACTCTTTTGACATTGTGCAATTTGTGTAGGAATCTAAGTAAGCGTAGCAACTCTGATGAATTGCTGGAAGTTTTTCAAGTTTTGTCTTCTGGTGATTATTTTAAAGATTTGGAGACTTACAACGTGATGGTGTCATTCCTGTGCAAAGCAGGAATGGTGAAGGAAGCCTATGCGGTACTTCCAGAGATGAAGAAGAAAGGGTTAAACCCAGATCTTTCAACTTATAATTCTCTTATTGAAGCATGTTGTAGGGAAGATCTATTGAGACCTGCTAAAAGGCTGTGGGATGAAATGTTTGCAAATGGGTGCAGAGGAAATTTGAAGACTTACAGTATCCTAATTCATAAGTTTTCGGAAGTAGGCCCAGTTGATGAGGCTCTAAGGCTCTTTTACCACATGTTGGGAAGAGAAGTTACACCCGACGCAATGACTTACACAACTCTACTTGAAGGGCTTTGTCAAGACACAAAGCTTGAAGCTGCTTTGGAAGTTTTTGACAAGTGTGTTGAACAGGATTTGATGCTTGCCCAATCTGTGTTGGGTACATTTATCCTCTCTTTATGCAAAGCAGGTCTTTTTCTTGCCGCTTCTAGGTTACTCTGCTGCCTCAGTTTTGATATAGCACATTCAGATTCTCATGTAGTTTTGCTGAAGTGTTTAGCCGATGCTAAAGAGATTCCAGTGGCCATTGAACACATTAACTGGGTTCGCCAAGCTTCACCCTCCATGTTGCAAACTATTTCAAACGAACTAGCATCGACTTCTTCTCCAACACCAGAGCCAATTTCACAGTTGCTTCAAACAATTTAG

Protein Analysis

630

Amino Acids

69.83

Weight (kDa)

6.89

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 396 - 444 3.5e-15 PPR repeat family
PPR_1 PF12854 396 - 424 7.5e-07 PPR repeat
PPR_3 PF13812 396 - 442 3.5e-07 Pentatricopeptide repeat domain
PPR PF01535 399 - 428 5.7e-07 PPR repeat
PPR_long PF17177 409 - 510 6.8e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 426 - 458 5.5e-09 PPR repeat
PPR_2 PF13041 430 - 477 2.6e-12 PPR repeat family
PPR PF01535 433 - 463 6.1e-06 PPR repeat
PPR_2 PF13041 473 - 514 4.4e-08 PPR repeat family
PPR_1 PF12854 497 - 527 5.2e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015220)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14080
fragaria_vesca FvH4_6g53850
malus_domestica MD09G1008000.v1.1
prunus_persica Prupe.3G308900_v2.0.a1 Prupe.3G308900_v2.0.a1
pyrus_communis pycom111g00640
rosa_chinensis RchiOBHm_Chr2g0175991
rosa_laevigata RLG00000022371
rosa_multiflora Rmu_sc0012513.1_g000006
rosa_roxburghii Rroxscaffold_2G00076880
rosa_rugosa Rorug02G0589200
rosa_samantha Rh2AG668400 Rh2BG679900 Rh2CG642800 Rh2DG693600
rosa_wichuraiana Rw2G054800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1305
Acc36I ACCTGC 2 cut(s) 1357, 1640
AccB7I CCANNNNNTGG 1 cut(s) 1480
AccI GTMKAC 1 cut(s) 809
AccII CGCG 1 cut(s) 132
AciI CCGC 9 cut(s) 57, 118, 130, 292, 303, 561, 586, 1253, 1665
AclWI GGATC 2 cut(s) 164, 1019
AcoI YGGCCR 1 cut(s) 1764
AcsI RAATTY 1 cut(s) 1396
AcuI CTGAAG 2 cut(s) 816, 1751
AfaI GTAC 2 cut(s) 1257, 1624
AfeI AGCGCT 1 cut(s) 678
AfiI CCNNNNNNNGG 2 cut(s) 1480, 1671
AflIII ACRYGT 1 cut(s) 1476
AjnI CCWGG 1 cut(s) 1027
AluBI AGCT 9 cut(s) 8, 545, 745, 800, 859, 1074, 1552, 1559, 1796
AluI AGCT 9 cut(s) 8, 545, 745, 800, 859, 1074, 1552, 1559, 1796
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 4 cut(s) 282, 913, 1187, 1339
AlwI GGATC 2 cut(s) 164, 1019
Ama87I CYCGRG 2 cut(s) 101, 159
Aor51HI AGCGCT 1 cut(s) 678
AoxI GGCC 4 cut(s) 74, 346, 1441, 1764
ApeKI GCWGC 3 cut(s) 479, 1559, 1683
ApoI RAATTY 1 cut(s) 1396
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
Asp700I GAANNNNTTC 2 cut(s) 801, 1152
AspLEI GCGC 1 cut(s) 679
AspS9I GGNCC 2 cut(s) 666, 1442
AsuHPI GGTGA 4 cut(s) 107, 1184, 1249, 1791
AvaI CYCGRG 2 cut(s) 101, 159
AvaII GGWCC 1 cut(s) 666
BalI TGGCCA 1 cut(s) 1766
BanII GRGCYC 1 cut(s) 337
BarI GAAGNNNNNNTAC 2 cut(s) 1477, 1509
BbsI GAAGAC 2 cut(s) 1158, 1409
Bbv12I GWGCWC 1 cut(s) 560
BbvCI CCTCAGC 1 cut(s) 746
BbvI GCAGC 3 cut(s) 466, 1546, 1670
BccI CCATC 2 cut(s) 488, 1201
BciT130I CCWGG 1 cut(s) 1029
BciVI GTATCC 1 cut(s) 1424
BclI TGATCA 1 cut(s) 684
BcoDI GTCTC 4 cut(s) 282, 913, 1187, 1339
BfaI CTAG 3 cut(s) 860, 1671, 1832
BfoI RGCGCY 1 cut(s) 680
BfuAI ACCTGC 2 cut(s) 1357, 1640
BfuI GTATCC 1 cut(s) 1424
BglII AGATCT 2 cut(s) 1291, 1336
BisI GCNGC 6 cut(s) 130, 480, 587, 1560, 1665, 1684
BlsI GCNGC 6 cut(s) 131, 481, 588, 1561, 1666, 1685
Bme1390I CCNGG 1 cut(s) 1029
Bme18I GGWCC 1 cut(s) 666
BmeT110I CYCGRG 2 cut(s) 101, 159
BmgT120I GGNCC 2 cut(s) 666, 1442
BmiI GGNNCC 3 cut(s) 92, 667, 870
BmrFI CCNGG 1 cut(s) 1029
BmrI ACTGGG 4 cut(s) 226, 822, 1439, 1792
BmsI GCATC 6 cut(s) 301, 343, 365, 1590, 1735, 1844
BmuI ACTGGG 4 cut(s) 226, 822, 1439, 1792
BpiI GAAGAC 2 cut(s) 1158, 1409
Bpu10I CCTNAGC 1 cut(s) 746
BpuEI CTTGAG 2 cut(s) 257, 305
Bsa29I ATCGAT 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 1339
BsaJI CCNNGG 3 cut(s) 121, 306, 872
BsaXI ACNNNNNCTCC 6 cut(s) 176, 206, 634, 664, 1831, 1861
Bsc4I CCNNNNNNNGG 2 cut(s) 1480, 1671
Bse1I ACTGG 5 cut(s) 221, 817, 1445, 1760, 1787
Bse3DI GCAATG 2 cut(s) 1044, 1512
BseBI CCWGG 1 cut(s) 1029
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 3 cut(s) 121, 306, 872
BseGI GGATG 3 cut(s) 316, 745, 1372
BseLI CCNNNNNNNGG 2 cut(s) 1480, 1671
BseMI GCAATG 2 cut(s) 1044, 1512
BseMII CTCAG 5 cut(s) 131, 239, 530, 737, 1702
BseNI ACTGG 5 cut(s) 221, 817, 1445, 1760, 1787
BseRI GAGGAG 2 cut(s) 170, 889
BseXI GCAGC 3 cut(s) 466, 1546, 1670
BsgI GTGCAG 1 cut(s) 1408
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 4 cut(s) 76, 348, 1443, 1766
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 560
BsiHKCI CYCGRG 2 cut(s) 101, 159
BslI CCNNNNNNNGG 2 cut(s) 1480, 1671
BsmAI GTCTC 4 cut(s) 282, 913, 1187, 1339
BsmBI CGTCTC 1 cut(s) 913
BsnI GGCC 4 cut(s) 76, 348, 1443, 1766
Bso31I GGTCTC 1 cut(s) 1339
BsoBI CYCGRG 2 cut(s) 101, 159
Bsp1286I GDGCHC 2 cut(s) 337, 560
Bsp143I GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 9 cut(s) 57, 118, 130, 292, 303, 561, 586, 1253, 1665
BspANI GGCC 4 cut(s) 76, 348, 1443, 1766
BspCNI CTCAG 5 cut(s) 132, 238, 531, 738, 1701
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 92, 667, 870
BspMI ACCTGC 2 cut(s) 1357, 1640
BspPI GGATC 2 cut(s) 164, 1019
BspQI GCTCTTC 1 cut(s) 117
BspTNI GGTCTC 1 cut(s) 1339
BsrDI GCAATG 2 cut(s) 1044, 1512
BsrI ACTGG 5 cut(s) 221, 817, 1445, 1760, 1787
BssECI CCNNGG 3 cut(s) 121, 306, 872
BssMI GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
BssT1I CCWWGG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 1029
Bst4CI ACNGT 2 cut(s) 1412, 1872
Bst6I CTCTTC 3 cut(s) 117, 845, 1480
BstC8I GCNNGC 3 cut(s) 510, 1072, 1605
BstDEI CTNAG 8 cut(s) 140, 225, 539, 612, 746, 1115, 1460, 1688
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 316, 745, 1372
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 680
BstHHI GCGC 1 cut(s) 679
BstKTI GATC 7 cut(s) 54, 172, 660, 687, 1027, 1294, 1339
BstMAI GTCTC 4 cut(s) 282, 913, 1187, 1339
BstMBI GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
BstMWI GCNNNNNNNGC 5 cut(s) 14, 126, 311, 485, 742
BstNI CCWGG 1 cut(s) 1029
BstNSI RCATGY 3 cut(s) 512, 1326, 1480
BstSCI CCNGG 1 cut(s) 1027
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 466, 1546, 1670
BstV2I GAAGAC 2 cut(s) 1158, 1409
BstX2I RGATCY 2 cut(s) 1291, 1336
BstYI RGATCY 2 cut(s) 1291, 1336
Bsu15I ATCGAT 1 cut(s) 168
BsuI GTATCC 1 cut(s) 1424
BsuRI GGCC 4 cut(s) 76, 348, 1443, 1766
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 316, 745, 1372
BtsIMutI CAGTG 3 cut(s) 137, 1017, 1767
BveI ACCTGC 2 cut(s) 1357, 1640
Cac8I GCNNGC 3 cut(s) 510, 1072, 1605
CfoI GCGC 1 cut(s) 679
Cfr13I GGNCC 2 cut(s) 666, 1442
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 1 cut(s) 1511
Csp6I GTAC 2 cut(s) 1256, 1623
CviQI GTAC 2 cut(s) 1256, 1623
DdeI CTNAG 8 cut(s) 140, 225, 539, 612, 746, 1115, 1460, 1688
DpnI GATC 7 cut(s) 53, 171, 659, 686, 1026, 1293, 1338
DpnII GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
DraI TTTAAA 1 cut(s) 1183
EaeI YGGCCR 1 cut(s) 1764
Eam1104I CTCTTC 3 cut(s) 117, 845, 1480
EarI CTCTTC 3 cut(s) 117, 845, 1480
EciI GGCGGA 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 1339
Eco47I GGWCC 1 cut(s) 666
Eco47III AGCGCT 1 cut(s) 678
Eco57I CTGAAG 2 cut(s) 816, 1751
Eco88I CYCGRG 2 cut(s) 101, 159
EcoRII CCWGG 1 cut(s) 1027
EcoT14I CCWWGG 1 cut(s) 306
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 913
FalI AAGNNNNNCTT 2 cut(s) 1638, 1670
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 1 cut(s) 684
FblI GTMKAC 1 cut(s) 809
Fnu4HI GCNGC 6 cut(s) 130, 480, 587, 1560, 1665, 1684
FokI GGATG 3 cut(s) 323, 752, 1379
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 6 cut(s) 130, 480, 587, 1560, 1665, 1684
FspBI CTAG 3 cut(s) 860, 1671, 1832
GlaI GCGC 1 cut(s) 678
GluI GCNGC 6 cut(s) 130, 480, 587, 1560, 1665, 1684
HaeII RGCGCY 1 cut(s) 680
HaeIII GGCC 4 cut(s) 76, 348, 1443, 1766
HgaI GACGC 1 cut(s) 1511
HhaI GCGC 1 cut(s) 679
Hin6I GCGC 1 cut(s) 677
HinP1I GCGC 1 cut(s) 677
HincII GTYRAC 1 cut(s) 1017
HindII GTYRAC 1 cut(s) 1017
HindIII AAGCTT 2 cut(s) 1550, 1794
HinfI GANTC 9 cut(s) 31, 79, 142, 162, 342, 535, 1111, 1712, 1756
HphI GGTGA 4 cut(s) 107, 1184, 1249, 1791
Hpy166II GTNNAC 3 cut(s) 146, 810, 1017
Hpy188III TCNNGA 4 cut(s) 103, 711, 1262, 1541
Hpy8I GTNNAC 3 cut(s) 146, 810, 1017
Hpy99I CGWCG 3 cut(s) 16, 158, 1505
HpyAV CCTTC 5 cut(s) 105, 247, 511, 1234, 1523
HpyCH4III ACNGT 2 cut(s) 1412, 1872
HpyCH4IV ACGT 1 cut(s) 1203
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 126, 311, 485, 742
HpyF3I CTNAG 8 cut(s) 140, 225, 539, 612, 746, 1115, 1460, 1688
HpySE526I ACGT 1 cut(s) 1203
HspAI GCGC 1 cut(s) 677
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 4 cut(s) 13, 374, 505, 874
Lsp1109I GCAGC 3 cut(s) 466, 1546, 1670
LweI GCATC 6 cut(s) 301, 343, 365, 1590, 1735, 1844
MaeI CTAG 3 cut(s) 860, 1671, 1832
MaeII ACGT 1 cut(s) 1203
MaeIII GTNAC 2 cut(s) 1492, 1674
MalI GATC 7 cut(s) 53, 171, 659, 686, 1026, 1293, 1338
MboI GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
MflI RGATCY 2 cut(s) 1291, 1336
MhlI GDGCHC 2 cut(s) 337, 560
MlsI TGGCCA 1 cut(s) 1766
MluCI AATT 9 cut(s) 296, 605, 1099, 1139, 1306, 1396, 1419, 1863, 1884
MluNI TGGCCA 1 cut(s) 1766
MlyI GAGTC 5 cut(s) 40, 73, 151, 171, 529
MmeI TCCRAC 3 cut(s) 87, 1042, 1874
Mox20I TGGCCA 1 cut(s) 1766
Mph1103I ATGCAT 1 cut(s) 358
MroXI GAANNNNTTC 2 cut(s) 801, 1152
MscI TGGCCA 1 cut(s) 1766
MseI TTAA 3 cut(s) 1182, 1283, 1779
MslI CAYNNNNRTG 1 cut(s) 1219
Msp20I TGGCCA 1 cut(s) 1766
MspA1I CMGCKG 1 cut(s) 563
MspR9I CCNGG 1 cut(s) 1029
MvaI CCWGG 1 cut(s) 1029
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 5 cut(s) 14, 126, 311, 485, 742
NcoI CCATGG 1 cut(s) 306
NdeII GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
NlaIV GGNNCC 3 cut(s) 92, 667, 870
NmeAIII GCCGAG 2 cut(s) 68, 183
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 3 cut(s) 512, 1326, 1480
PaeI GCATGC 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 101
PciI ACATGT 1 cut(s) 1476
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 2 cut(s) 40, 129
PdmI GAANNNNTTC 2 cut(s) 801, 1152
PfeI GAWTC 4 cut(s) 342, 1111, 1712, 1756
PflMI CCANNNNNTGG 1 cut(s) 1480
PkrI GCNGC 6 cut(s) 131, 481, 588, 1561, 1666, 1685
PleI GAGTC 5 cut(s) 39, 73, 150, 170, 529
PpsI GAGTC 5 cut(s) 39, 73, 150, 170, 529
PscI ACATGT 1 cut(s) 1476
PsiI TTATAA 1 cut(s) 1305
Psp6I CCWGG 1 cut(s) 1027
PspGI CCWGG 1 cut(s) 1027
PspN4I GGNNCC 3 cut(s) 92, 667, 870
PspPI GGNCC 2 cut(s) 666, 1442
PsuI RGATCY 2 cut(s) 1291, 1336
RsaI GTAC 2 cut(s) 1257, 1624
RsaNI GTAC 2 cut(s) 1256, 1623
RseI CAYNNNNRTG 1 cut(s) 1219
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 3 cut(s) 1182, 1283, 1779
SatI GCNGC 6 cut(s) 130, 480, 587, 1560, 1665, 1684
Sau3AI GATC 7 cut(s) 51, 169, 657, 684, 1024, 1291, 1336
Sau96I GGNCC 2 cut(s) 666, 1442
SchI GAGTC 5 cut(s) 40, 73, 151, 171, 529
ScrFI CCNGG 1 cut(s) 1029
SduI GDGCHC 2 cut(s) 337, 560
SfaNI GCATC 6 cut(s) 301, 343, 365, 1590, 1735, 1844
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 666
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 1219
SmlI CTYRAG 3 cut(s) 101, 272, 320
SmoI CTYRAG 3 cut(s) 101, 272, 320
SphI GCATGC 1 cut(s) 512
Sse9I AATT 9 cut(s) 296, 605, 1099, 1139, 1306, 1396, 1419, 1863, 1884
SsiI CCGC 9 cut(s) 57, 118, 130, 292, 303, 561, 586, 1253, 1665
SspMI CTAG 3 cut(s) 860, 1671, 1832
StyD4I CCNGG 1 cut(s) 1027
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 1412, 1872
TaiI ACGT 1 cut(s) 1206
TaqI TCGA 8 cut(s) 34, 102, 168, 351, 656, 710, 978, 1838
TaqII GACCGA 2 cut(s) 349, 795
TasI AATT 9 cut(s) 296, 605, 1099, 1139, 1306, 1396, 1419, 1863, 1884
TauI GCSGC 3 cut(s) 132, 589, 1667
TfiI GAWTC 4 cut(s) 342, 1111, 1712, 1756
Tru1I TTAA 3 cut(s) 1182, 1283, 1779
Tru9I TTAA 3 cut(s) 1182, 1283, 1779
TscAI CASTG 3 cut(s) 144, 1017, 1767
TseI GCWGC 3 cut(s) 479, 1559, 1683
TspGWI ACGGA 3 cut(s) 361, 658, 937
TspRI CASTG 3 cut(s) 144, 1017, 1767
Van91I CCANNNNNTGG 1 cut(s) 1480
VpaK11BI GGWCC 1 cut(s) 666
XapI RAATTY 1 cut(s) 1396
XceI RCATGY 3 cut(s) 512, 1326, 1480
XhoI CTCGAG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 809
XmnI GAANNNNTTC 2 cut(s) 801, 1152
XspI CTAG 3 cut(s) 860, 1671, 1832
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.