FvH4_6g54110

Translocon-associated protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009086
Physical Location & Seq
Forward (+)
39538553 .. 39541296
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g54110.t4

Sequence Viewer

Length: 471 bp
ATGGCGAAGCCTCTCATCTTCACGACGCTGCTCTCTCTCCTCCTCCTCCTCATCACGACGGCGCTCGCCAGCTCAGACTCTCCCTTCATCGTCGCGCACAAGAAGGCCTCCCTCAACAGGCTCAAGTCCGGCGCCGAGCGCGTTTCGGTCTCTGTTGATATCTACAACCAAGGATCTTCAACTGCCTATGATGTAAGTTTGAGTGATGAGAGCTGGCCTCAGGATCTCTTTGATATTGTCAGTGGCAACACTTCCAAGTCATGGGAAAGGCTTGATGCAGGCGGCGTTATATCTCACTCTTTTGAATTGGAGGCCAAGACGAAGGGAATGTTCAATGGTGCACCAGCTGTTATTACATTTCGCATTCCCACAAAGGCTGCTCTACAGGAGGCATATTCAACCCCCATACTGCCTTTGGATGTTCTTGCTGACAGGCCTCCTGAGAAGAAACTTGAGTGGGTTAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
TRAP_beta

Protein Analysis

157

Amino Acids

16.96

Weight (kDa)

6.1

Isoelectric Point (pI)

27.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAP_beta PF05753 14 - 154 7.6e-51 Translocon-associated protein beta (TRAPB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 261
AccII CGCG 2 cut(s) 95, 141
AciI CCGC 1 cut(s) 282
AclWI GGATC 2 cut(s) 181, 231
AcyI GRCGYC 1 cut(s) 132
AfiI CCNNNNNNNGG 2 cut(s) 117, 261
AgsI TTSAA 4 cut(s) 180, 305, 334, 399
AluBI AGCT 3 cut(s) 72, 213, 347
AluI AGCT 3 cut(s) 72, 213, 347
Alw21I GWGCWC 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 154
Alw44I GTGCAC 1 cut(s) 339
AlwI GGATC 2 cut(s) 181, 231
AoxI GGCC 4 cut(s) 105, 215, 312, 434
ApaLI GTGCAC 1 cut(s) 339
ApeKI GCWGC 2 cut(s) 28, 377
AspLEI GCGC 4 cut(s) 64, 97, 134, 141
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 2 cut(s) 15, 364
BceAI ACGGC 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 154
BfmI CTRYAG 1 cut(s) 383
BfoI RGCGCY 2 cut(s) 65, 135
BisI GCNGC 3 cut(s) 29, 283, 378
BlsI GCNGC 3 cut(s) 30, 284, 379
BmiI GGNNCC 1 cut(s) 133
BmsI GCATC 1 cut(s) 265
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpuEI CTTGAG 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 261
Bse21I CCTNAGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 2 cut(s) 117, 261
BseMII CTCAG 3 cut(s) 87, 233, 432
BseRI GAGGAG 4 cut(s) 29, 32, 35, 38
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 2 cut(s) 15, 364
Bsh1236I CGCG 2 cut(s) 95, 141
BshFI GGCC 4 cut(s) 107, 217, 314, 436
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 343
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 117, 261
BsmAI GTCTC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 363
BsnI GGCC 4 cut(s) 107, 217, 314, 436
Bso31I GGTCTC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 2 cut(s) 173, 223
BspACI CCGC 1 cut(s) 282
BspANI GGCC 4 cut(s) 107, 217, 314, 436
BspCNI CTCAG 3 cut(s) 86, 232, 433
BspFNI CGCG 2 cut(s) 95, 141
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 2 cut(s) 181, 231
BspT107I GGYRCC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 173, 223
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 4 cut(s) 66, 70, 215, 280
BstDEI CTNAG 3 cut(s) 73, 219, 441
BstF5I GGATG 1 cut(s) 424
BstFNI CGCG 2 cut(s) 95, 141
BstH2I RGCGCY 2 cut(s) 65, 135
BstHHI GCGC 4 cut(s) 64, 97, 134, 141
BstKTI GATC 2 cut(s) 176, 226
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 2 cut(s) 173, 223
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstSFI CTRYAG 1 cut(s) 383
BstSLI GKGCMC 1 cut(s) 343
BstUI CGCG 2 cut(s) 95, 141
BstV1I GCAGC 2 cut(s) 15, 364
BstX2I RGATCY 2 cut(s) 173, 223
BstYI RGATCY 2 cut(s) 173, 223
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 4 cut(s) 107, 217, 314, 436
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 4 cut(s) 66, 70, 215, 280
CfoI GCGC 4 cut(s) 64, 97, 134, 141
CseI GACGC 1 cut(s) 34
CviAII CATG 1 cut(s) 261
DdeI CTNAG 3 cut(s) 73, 219, 441
DinI GGCGCC 1 cut(s) 133
DpnI GATC 2 cut(s) 175, 225
DpnII GATC 2 cut(s) 173, 223
Eco130I CCWWGG 1 cut(s) 169
Eco147I AGGCCT 2 cut(s) 107, 436
Eco31I GGTCTC 1 cut(s) 154
Eco32I GATATC 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 219
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 169
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 264
FaiI YATR 6 cut(s) 189, 262, 290, 394, 407, 469
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 3 cut(s) 29, 283, 378
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 3 cut(s) 29, 283, 378
GlaI GCGC 4 cut(s) 63, 96, 133, 140
GluI GCNGC 3 cut(s) 29, 283, 378
HaeII RGCGCY 2 cut(s) 65, 135
HaeIII GGCC 4 cut(s) 107, 217, 314, 436
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 34
HhaI GCGC 4 cut(s) 64, 97, 134, 141
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 1 cut(s) 264
Hin6I GCGC 4 cut(s) 62, 95, 132, 139
HinP1I GCGC 4 cut(s) 62, 95, 132, 139
HinfI GANTC 1 cut(s) 77
HpaII CCGG 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 4 cut(s) 22, 55, 221, 440
Hpy8I GTNNAC 1 cut(s) 341
Hpy99I CGWCG 3 cut(s) 28, 61, 95
HpyAV CCTTC 3 cut(s) 94, 97, 316
HpyCH4V TGCA 2 cut(s) 278, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpyF3I CTNAG 3 cut(s) 73, 219, 441
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 1 cut(s) 264
HspAI GCGC 4 cut(s) 62, 95, 132, 139
KasI GGCGCC 1 cut(s) 131
Kzo9I GATC 2 cut(s) 173, 223
Lsp1109I GCAGC 2 cut(s) 15, 364
LweI GCATC 1 cut(s) 265
MalI GATC 2 cut(s) 175, 225
MboI GATC 2 cut(s) 173, 223
MboII GAAGA 3 cut(s) 10, 168, 457
MflI RGATCY 2 cut(s) 173, 223
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 1 cut(s) 305
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 1 cut(s) 71
MseI TTAA 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 363
MvnI CGCG 2 cut(s) 95, 141
MwoI GCNNNNNNNGC 1 cut(s) 138
NarI GGCGCC 1 cut(s) 132
NdeII GATC 2 cut(s) 173, 223
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 1 cut(s) 133
NmeAIII GCCGAG 1 cut(s) 160
PceI AGGCCT 2 cut(s) 107, 436
PctI GAATGC 1 cut(s) 363
PflMI CCANNNNNTGG 1 cut(s) 261
PkrI GCNGC 3 cut(s) 30, 284, 379
PleI GAGTC 1 cut(s) 71
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 133
PsuI RGATCY 2 cut(s) 173, 223
PvuII CAGCTG 1 cut(s) 347
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 3 cut(s) 29, 283, 378
Sau3AI GATC 2 cut(s) 173, 223
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 1 cut(s) 343
SetI ASST 4 cut(s) 74, 215, 349, 468
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 383
SfoI GGCGCC 1 cut(s) 133
SmlI CTYRAG 2 cut(s) 122, 452
SmoI CTYRAG 2 cut(s) 122, 452
Sse9I AATT 1 cut(s) 305
SseBI AGGCCT 2 cut(s) 107, 436
SsiI CCGC 1 cut(s) 282
SspDI GGCGCC 1 cut(s) 131
StuI AGGCCT 2 cut(s) 107, 436
StyI CCWWGG 1 cut(s) 169
TaqII GACCGA 1 cut(s) 136
TasI AATT 1 cut(s) 305
TauI GCSGC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 1 cut(s) 247
TseI GCWGC 2 cut(s) 28, 377
TspDTI ATGAA 1 cut(s) 76
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 261
VneI GTGCAC 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.