RLG00000022398

Translocon-associated protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009086
Physical Location & Seq
Forward (+)
83107742 .. 83110081
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022398

Sequence Viewer

Length: 588 bp
ATGGCGAAACCAATCGTCAAGCCTCTGATCCTGACGCTGCTTTCTCTGCTGCTCTTCACGTCGGCGCTCGCCAGCTCGGACTCGCCCTTCATCGTCGCGCACAAGAAGGCCTCCCTCAACAGGCTCAAGTCCGGCGCCGAGCGTGTTTCCGTCTCTATTGATATCTACAACCAAGGATCTTCAACTGCATATGATGTAAGTTTGAGTGATGAGAACTGGCCTCAAGATCTCTTTGATTTTGTCAGCGGCAACGCTTCCAAGTCATGGGAAAGGCTTGATGCAGGTGGCATTATATCCCACTCTTTTGAATTGGAGGCCAAGACGAAAGGACTGTTTAGCGGTGCACCAGCTGTTATTACATTTCGCATTCCCACTAAGGCTGCTCTGCAGGAGGCATATTCAACCCCCATACTGCCTTTAGATGTTCTTGCTGACAGGCCGCCTGAAAAGAAATTTGAGTGGGTTAAGAGGCTGCTGGCAAAGTATGGGTCTCTGATCTCTGTGTTATCCATTGTGGTTCTGTTCGTGTACCTGGTTGCCACTCCAGGTAAATCTGGTGGTGCAAAAGGAAGCAAGAAGAAGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
TRAP_beta

Protein Analysis

196

Amino Acids

21.1

Weight (kDa)

9.64

Isoelectric Point (pI)

26.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAP_beta PF05753 17 - 189 7.4e-55 Translocon-associated protein beta (TRAPB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 264
AccII CGCG 1 cut(s) 98
AciI CCGC 3 cut(s) 246, 339, 440
AclWI GGATC 2 cut(s) 22, 184
AcsI RAATTY 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 2 cut(s) 120, 264
AgsI TTSAA 3 cut(s) 183, 308, 402
AjiI CACGTC 1 cut(s) 60
AjnI CCWGG 2 cut(s) 531, 544
AluBI AGCT 2 cut(s) 75, 350
AluI AGCT 2 cut(s) 75, 350
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 2 cut(s) 157, 495
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 2 cut(s) 22, 184
AoxI GGCC 4 cut(s) 108, 218, 315, 437
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 4 cut(s) 37, 49, 380, 472
ApoI RAATTY 1 cut(s) 452
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AspLEI GCGC 3 cut(s) 67, 100, 137
BaeGI GKGCMC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 4 cut(s) 24, 36, 367, 459
BciT130I CCWGG 2 cut(s) 533, 546
BcoDI GTCTC 2 cut(s) 157, 495
BfmI CTRYAG 1 cut(s) 386
BfoI RGCGCY 2 cut(s) 68, 138
BfuAI ACCTGC 1 cut(s) 272
BglII AGATCT 1 cut(s) 226
BisI GCNGC 6 cut(s) 38, 50, 247, 381, 440, 473
BlsI GCNGC 6 cut(s) 39, 51, 248, 382, 441, 474
Bme1390I CCNGG 2 cut(s) 533, 546
BmgBI CACGTC 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 533, 546
BmsI GCATC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 528
BpuEI CTTGAG 2 cut(s) 110, 207
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 264
Bse1I ACTGG 1 cut(s) 221
BseBI CCWGG 2 cut(s) 533, 546
BseDI CCNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 120, 264
BseNI ACTGG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 4 cut(s) 24, 36, 367, 459
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 4 cut(s) 110, 220, 317, 439
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 120, 264
BsmAI GTCTC 2 cut(s) 157, 495
BsmBI CGTCTC 1 cut(s) 157
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 4 cut(s) 110, 220, 317, 439
Bso31I GGTCTC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 4 cut(s) 27, 176, 226, 495
BspACI CCGC 3 cut(s) 246, 339, 440
BspANI GGCC 4 cut(s) 110, 220, 317, 439
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 136
BspMAI CTGCAG 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 272
BspPI GGATC 2 cut(s) 22, 184
BspQI GCTCTTC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 495
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 4 cut(s) 27, 176, 226, 495
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 2 cut(s) 533, 546
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 3 cut(s) 69, 73, 477
BstDEI CTNAG 1 cut(s) 375
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 2 cut(s) 68, 138
BstHHI GCGC 3 cut(s) 67, 100, 137
BstKTI GATC 4 cut(s) 30, 179, 229, 498
BstMAI GTCTC 2 cut(s) 157, 495
BstMBI GATC 4 cut(s) 27, 176, 226, 495
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 2 cut(s) 533, 546
BstSCI CCNGG 2 cut(s) 531, 544
BstSFI CTRYAG 1 cut(s) 386
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 4 cut(s) 24, 36, 367, 459
BstX2I RGATCY 2 cut(s) 176, 226
BstYI RGATCY 2 cut(s) 176, 226
BsuRI GGCC 4 cut(s) 110, 220, 317, 439
BtrI CACGTC 1 cut(s) 60
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 3 cut(s) 69, 73, 477
CfoI GCGC 3 cut(s) 67, 100, 137
CseI GACGC 1 cut(s) 43
CsiI ACCWGGT 1 cut(s) 531
Csp6I GTAC 1 cut(s) 529
CviAII CATG 1 cut(s) 264
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 1 cut(s) 375
DinI GGCGCC 1 cut(s) 136
DpnI GATC 4 cut(s) 29, 178, 228, 497
DpnII GATC 4 cut(s) 27, 176, 226, 495
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 172
Eco147I AGGCCT 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 495
Eco32I GATATC 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 531, 544
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 172
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 1 cut(s) 267
FaiI YATR 7 cut(s) 190, 192, 265, 293, 397, 410, 486
FatI CATG 1 cut(s) 263
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 6 cut(s) 38, 50, 247, 381, 440, 473
Fsp4HI GCNGC 6 cut(s) 38, 50, 247, 381, 440, 473
GlaI GCGC 3 cut(s) 66, 99, 136
GluI GCNGC 6 cut(s) 38, 50, 247, 381, 440, 473
GsuI CTGGAG 1 cut(s) 528
HaeII RGCGCY 2 cut(s) 68, 138
HaeIII GGCC 4 cut(s) 110, 220, 317, 439
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 43
HhaI GCGC 3 cut(s) 67, 100, 137
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 3 cut(s) 65, 98, 135
HinP1I GCGC 3 cut(s) 65, 98, 135
HinfI GANTC 1 cut(s) 80
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 344, 529
Hpy188I TCNGA 3 cut(s) 27, 79, 495
Hpy188III TCNNGA 2 cut(s) 31, 224
Hpy8I GTNNAC 2 cut(s) 344, 529
Hpy99I CGWCG 2 cut(s) 64, 98
HpyAV CCTTC 2 cut(s) 97, 100
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 5 cut(s) 188, 281, 344, 388, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 59
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 3 cut(s) 65, 98, 135
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 4 cut(s) 27, 176, 226, 495
LguI GCTCTTC 1 cut(s) 59
Lsp1109I GCAGC 4 cut(s) 24, 36, 367, 459
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 1 cut(s) 531
MaeII ACGT 1 cut(s) 59
MalI GATC 4 cut(s) 29, 178, 228, 497
MboI GATC 4 cut(s) 27, 176, 226, 495
MboII GAAGA 2 cut(s) 46, 171
MflI RGATCY 2 cut(s) 176, 226
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 2 cut(s) 308, 452
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 7 cut(s) 33, 121, 125, 231, 307, 385, 462
MseI TTAA 2 cut(s) 465, 586
MspA1I CMGCKG 2 cut(s) 246, 350
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 533, 546
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 2 cut(s) 533, 546
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 46
NarI GGCGCC 1 cut(s) 135
NdeI CATATG 1 cut(s) 190
NdeII GATC 4 cut(s) 27, 176, 226, 495
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 272
PceI AGGCCT 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 59
PctI GAATGC 1 cut(s) 366
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 6 cut(s) 39, 51, 248, 382, 441, 474
PleI GAGTC 1 cut(s) 74
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 531, 544
PspGI CCWGG 2 cut(s) 531, 544
PspN4I GGNNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 390
PsuI RGATCY 2 cut(s) 176, 226
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SapI GCTCTTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 465, 586
SatI GCNGC 6 cut(s) 38, 50, 247, 381, 440, 473
Sau3AI GATC 4 cut(s) 27, 176, 226, 495
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 533, 546
SduI GDGCHC 1 cut(s) 346
SetI ASST 6 cut(s) 62, 77, 286, 352, 534, 550
SexAI ACCWGGT 1 cut(s) 531
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 386
SfoI GGCGCC 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 125, 222
SmoI CTYRAG 2 cut(s) 125, 222
Sse9I AATT 2 cut(s) 308, 452
SseBI AGGCCT 1 cut(s) 110
SsiI CCGC 3 cut(s) 246, 339, 440
SspDI GGCGCC 1 cut(s) 134
StuI AGGCCT 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 531, 544
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 1 cut(s) 62
TasI AATT 2 cut(s) 308, 452
TauI GCSGC 2 cut(s) 249, 442
Tru1I TTAA 2 cut(s) 465, 586
Tru9I TTAA 2 cut(s) 465, 586
TseI GCWGC 4 cut(s) 37, 49, 380, 472
TspDTI ATGAA 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 264
VneI GTGCAC 1 cut(s) 342
XapI RAATTY 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.