Rmu_co8476029.1_g000001

Translocon-associated protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8476029.1
OG0009086
Physical Location & Seq
Reverse (-)
1 .. 2067
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8476029.1_g000001.1.cds

Sequence Viewer

Length: 462 bp
atggcgaaaccaatcgtgaagcctctgatccttacgctgctttctctgctgctcttcacgtcggcgctcgccagctcagactcgccgttcatcgtcgcgcacaagaaggcctccctcaacaggctcaagtccggcgccgagcgcgtttccgtctctattgatatctacaaccaaggatcttcaactgcatatgatgtaagtttgagtgatgagagttggcctcaagatctttttgattttgtcagcggcaatgcttccaagtcatgggaaaggcttgatgcaggtggcattatatcccactcttttgaattggaggccaagacgaaaggactgtttagcggtgcaccagctgttattacatttcgcattcccacaaaggctgctctgcaggaggcatattcaacccccatactgcctttagatgttcttgctgacaggcctcctgagaagaaatttgagtgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
TRAP_beta

Protein Analysis

154

Amino Acids

16.75

Weight (kDa)

6.1

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 264
AccII CGCG 2 cut(s) 98, 144
AciI CCGC 2 cut(s) 246, 339
AclWI GGATC 2 cut(s) 22, 184
AcsI RAATTY 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 120, 264
AgsI TTSAA 3 cut(s) 183, 308, 402
AjiI CACGTC 1 cut(s) 60
AluBI AGCT 2 cut(s) 75, 350
AluI AGCT 2 cut(s) 75, 350
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 1 cut(s) 157
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 2 cut(s) 22, 184
AoxI GGCC 4 cut(s) 108, 218, 315, 437
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 3 cut(s) 37, 49, 380
ApoI RAATTY 1 cut(s) 452
AspLEI GCGC 4 cut(s) 67, 100, 137, 144
BaeGI GKGCMC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 3 cut(s) 24, 36, 367
BceAI ACGGC 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 386
BfoI RGCGCY 2 cut(s) 68, 138
BfuAI ACCTGC 1 cut(s) 272
BglII AGATCT 1 cut(s) 226
BisI GCNGC 4 cut(s) 38, 50, 247, 381
BlsI GCNGC 4 cut(s) 39, 51, 248, 382
BmgBI CACGTC 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 136
BmsI GCATC 1 cut(s) 268
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpuEI CTTGAG 2 cut(s) 110, 207
BsaHI GRCGYC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 264
Bse3DI GCAATG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 120, 264
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 2 cut(s) 90, 435
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 3 cut(s) 24, 36, 367
Bsh1236I CGCG 2 cut(s) 98, 144
BshFI GGCC 4 cut(s) 110, 220, 317, 439
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 120, 264
BsmAI GTCTC 1 cut(s) 157
BsmBI CGTCTC 1 cut(s) 157
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 4 cut(s) 110, 220, 317, 439
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 3 cut(s) 27, 176, 226
BspACI CCGC 2 cut(s) 246, 339
BspANI GGCC 4 cut(s) 110, 220, 317, 439
BspCNI CTCAG 2 cut(s) 89, 436
BspFNI CGCG 2 cut(s) 98, 144
BspLI GGNNCC 1 cut(s) 136
BspMAI CTGCAG 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 272
BspPI GGATC 2 cut(s) 22, 184
BspQI GCTCTTC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 172
BssMI GATC 3 cut(s) 27, 176, 226
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 69, 73
BstDEI CTNAG 2 cut(s) 76, 444
BstFNI CGCG 2 cut(s) 98, 144
BstH2I RGCGCY 2 cut(s) 68, 138
BstHHI GCGC 4 cut(s) 67, 100, 137, 144
BstKTI GATC 3 cut(s) 30, 179, 229
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 3 cut(s) 27, 176, 226
BstMWI GCNNNNNNNGC 2 cut(s) 46, 141
BstSFI CTRYAG 1 cut(s) 386
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 2 cut(s) 98, 144
BstV1I GCAGC 3 cut(s) 24, 36, 367
BstX2I RGATCY 2 cut(s) 176, 226
BstYI RGATCY 2 cut(s) 176, 226
BsuRI GGCC 4 cut(s) 110, 220, 317, 439
BtrI CACGTC 1 cut(s) 60
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 2 cut(s) 69, 73
CfoI GCGC 4 cut(s) 67, 100, 137, 144
CviAII CATG 1 cut(s) 264
DdeI CTNAG 2 cut(s) 76, 444
DinI GGCGCC 1 cut(s) 136
DpnI GATC 3 cut(s) 29, 178, 228
DpnII GATC 3 cut(s) 27, 176, 226
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 172
Eco147I AGGCCT 2 cut(s) 110, 439
Eco32I GATATC 1 cut(s) 163
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 172
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 172
Esp3I CGTCTC 1 cut(s) 157
FaeI CATG 1 cut(s) 267
FaiI YATR 6 cut(s) 190, 192, 265, 293, 397, 410
FatI CATG 1 cut(s) 263
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 38, 50, 247, 381
Fsp4HI GCNGC 4 cut(s) 38, 50, 247, 381
GlaI GCGC 4 cut(s) 66, 99, 136, 143
GluI GCNGC 4 cut(s) 38, 50, 247, 381
HaeII RGCGCY 2 cut(s) 68, 138
HaeIII GGCC 4 cut(s) 110, 220, 317, 439
HapII CCGG 1 cut(s) 132
HhaI GCGC 4 cut(s) 67, 100, 137, 144
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 4 cut(s) 65, 98, 135, 142
HinP1I GCGC 4 cut(s) 65, 98, 135, 142
HinfI GANTC 1 cut(s) 80
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 344
Hpy188I TCNGA 2 cut(s) 27, 79
Hpy188III TCNNGA 3 cut(s) 16, 224, 443
Hpy8I GTNNAC 1 cut(s) 344
Hpy99I CGWCG 2 cut(s) 64, 98
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 188, 281, 344, 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 141
HpyF3I CTNAG 2 cut(s) 76, 444
HpySE526I ACGT 1 cut(s) 59
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 4 cut(s) 65, 98, 135, 142
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 3 cut(s) 27, 176, 226
LguI GCTCTTC 1 cut(s) 59
LpnPI CCDG 8 cut(s) 85, 106, 145, 267, 360, 374, 421, 456
Lsp1109I GCAGC 3 cut(s) 24, 36, 367
LweI GCATC 1 cut(s) 268
MaeII ACGT 1 cut(s) 59
MalI GATC 3 cut(s) 29, 178, 228
MboI GATC 3 cut(s) 27, 176, 226
MboII GAAGA 3 cut(s) 46, 171, 460
MflI RGATCY 2 cut(s) 176, 226
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 2 cut(s) 308, 452
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 7 cut(s) 33, 121, 125, 231, 307, 385, 450
MspA1I CMGCKG 2 cut(s) 246, 350
MspI CCGG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 366
MvnI CGCG 2 cut(s) 98, 144
MwoI GCNNNNNNNGC 2 cut(s) 46, 141
NarI GGCGCC 1 cut(s) 135
NdeI CATATG 1 cut(s) 190
NdeII GATC 3 cut(s) 27, 176, 226
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 272
PceI AGGCCT 2 cut(s) 110, 439
PciSI GCTCTTC 1 cut(s) 59
PctI GAATGC 1 cut(s) 366
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 4 cut(s) 39, 51, 248, 382
PleI GAGTC 1 cut(s) 74
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 390
PsuI RGATCY 2 cut(s) 176, 226
PvuII CAGCTG 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 59
SatI GCNGC 4 cut(s) 38, 50, 247, 381
Sau3AI GATC 3 cut(s) 27, 176, 226
SchI GAGTC 1 cut(s) 74
SduI GDGCHC 1 cut(s) 346
SetI ASST 4 cut(s) 62, 77, 286, 352
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 386
SfoI GGCGCC 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 125, 222
SmoI CTYRAG 2 cut(s) 125, 222
Sse9I AATT 2 cut(s) 308, 452
SseBI AGGCCT 2 cut(s) 110, 439
SsiI CCGC 2 cut(s) 246, 339
SspDI GGCGCC 1 cut(s) 134
StuI AGGCCT 2 cut(s) 110, 439
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 1 cut(s) 62
TasI AATT 2 cut(s) 308, 452
TauI GCSGC 1 cut(s) 249
TseI GCWGC 3 cut(s) 37, 49, 380
TspDTI ATGAA 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 264
VneI GTGCAC 1 cut(s) 342
XapI RAATTY 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.