Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009086

Physical Location & Seq

Genomic Coordinates Forward (+)

27021552 .. 27024285

Gene Structure 2734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G311500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCGAAGAATCCAATCAGCAGCCCCGTCATCTCGGCGGTGGTAGCTCTGTTGCTGTTCACATCGGCGCTCGCGAGCTCTGACTCGCCCTTCATCGTCTCCCACAAGAAGGCCTCCCTCAACAGGCTCAAGTCCGGCGCTGAGCGCGTCTCTGTTTCCATCGATATCTACAACCAAGGATCTTCAACTGCTTATGATGTAAGCTTGAGTGATGAGAGCTGGCCTCAAGATATCTTCGATGTTGTCAGTGGCAACACTTCCAAGTCATGGGAAAGGCTGGATGCAGGTGGCATTATATCCCACTCTTTTGAATTGGAGGCCAAAGAAAGAGGAATATTTAATGGTGCACCGGCTCTTATTACATTCCGCATTCCCACAAAGGCTGCTCTACAGGAGTCTTTTTCAACTCCAATTCTGCCTCTAGATGTTCTTGCAGACAGGCCTCCTGAGAACAAGTTTGACTCGGTTAAGAGGCTGCTGGCAAAGTATGGGTCTCTGATCTCTGTGGTCTCCATTGTGGTTCTATTTGTGTACTTGGTTGCTAGTCCATCCAAATCCGGTGCTGCAAAAGGAGGCAAGAAGAAGCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_beta

Protein Analysis

197

Amino Acids

20.97

Weight (kDa)

9.42

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14030 AT5G14030 AT5G14030 AT5G14030 AT5G14030
fragaria_vesca	FvH4_6g54110 FvH4_6g54110 FvH4_6g54110 FvH4_6g54110 FvH4_6g54110
malus_domestica	MD09G1005300.v1.1 MD17G1009400.v1.1
prunus_persica	Prupe.3G311500_v2.0.a1
pyrus_communis	pycom111g00390 pycom17g00420
rosa_chinensis	RchiOBHm_Chr2g0176281
rosa_laevigata	RLG00000022398
rosa_multiflora	Rmu_co8476029.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076610
rosa_rugosa	Rorug02G0592900
rosa_samantha	Rh2BG682700
rosa_wichuraiana	Rw2G055050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	267
AccII	CGCG	2 cut(s)	74, 147
AciI	CCGC	2 cut(s)	38, 367
AclWI	GGATC	1 cut(s)	187
AfaI	GTAC	1 cut(s)	533
AfeI	AGCGCT	1 cut(s)	587
AfiI	CCNNNNNNNGG	3 cut(s)	109, 123, 267
AgsI	TTSAA	3 cut(s)	186, 311, 405
AluBI	AGCT	4 cut(s)	47, 78, 204, 219
AluI	AGCT	4 cut(s)	47, 78, 204, 219
Alw21I	GWGCWC	2 cut(s)	80, 349
Alw26I	GTCTC	4 cut(s)	103, 154, 498, 514
Alw44I	GTGCAC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	187
Aor51HI	AGCGCT	1 cut(s)	587
AoxI	GGCC	4 cut(s)	111, 221, 318, 440
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	4 cut(s)	21, 383, 475, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspLEI	GCGC	4 cut(s)	70, 140, 147, 588
BaeGI	GKGCMC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	80, 349
BbvI	GCAGC	4 cut(s)	33, 370, 462, 550
BccI	CCATC	2 cut(s)	167, 556
BcoDI	GTCTC	4 cut(s)	103, 154, 498, 514
BfaI	CTAG	2 cut(s)	422, 543
BfmI	CTRYAG	1 cut(s)	389
BfoI	RGCGCY	3 cut(s)	71, 141, 589
BfuAI	ACCTGC	1 cut(s)	275
BisI	GCNGC	4 cut(s)	22, 384, 476, 564
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	4 cut(s)	23, 385, 477, 565
BmsI	GCATC	1 cut(s)	271
BplI	GAGNNNNNCTC	4 cut(s)	134, 166, 208, 240
Bpu1102I	GCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	3 cut(s)	113, 210, 226
Bsa29I	ATCGAT	1 cut(s)	162
BsaI	GGTCTC	2 cut(s)	498, 514
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 123, 267
Bse118I	RCCGGY	1 cut(s)	349
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	286, 548
BseLI	CCNNNNNNNGG	3 cut(s)	109, 123, 267
BseMII	CTCAG	2 cut(s)	132, 438
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	4 cut(s)	33, 370, 462, 550
Bsh1236I	CGCG	2 cut(s)	74, 147
BshFI	GGCC	4 cut(s)	113, 223, 320, 442
BshVI	ATCGAT	1 cut(s)	162
BsiHKAI	GWGCWC	2 cut(s)	80, 349
BsiSI	CCGG	3 cut(s)	135, 350, 558
BslI	CCNNNNNNNGG	3 cut(s)	109, 123, 267
BsmAI	GTCTC	4 cut(s)	103, 154, 498, 514
BsmBI	CGTCTC	2 cut(s)	103, 154
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	4 cut(s)	113, 223, 320, 442
Bso31I	GGTCTC	2 cut(s)	498, 514
Bsp1286I	GDGCHC	2 cut(s)	80, 349
Bsp143I	GATC	2 cut(s)	179, 498
Bsp1720I	GCTNAGC	1 cut(s)	141
Bsp68I	TCGCGA	1 cut(s)	74
BspACI	CCGC	2 cut(s)	38, 367
BspANI	GGCC	4 cut(s)	113, 223, 320, 442
BspCNI	CTCAG	2 cut(s)	133, 439
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	74, 147
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	187
BspTNI	GGTCTC	2 cut(s)	498, 514
BsrFI	RCCGGY	1 cut(s)	349
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	2 cut(s)	179, 498
BssT1I	CCWWGG	1 cut(s)	175
BstC8I	GCNNGC	4 cut(s)	72, 76, 221, 480
BstDEI	CTNAG	2 cut(s)	141, 447
BstF5I	GGATG	2 cut(s)	286, 548
BstFNI	CGCG	2 cut(s)	74, 147
BstH2I	RGCGCY	3 cut(s)	71, 141, 589
BstHHI	GCGC	4 cut(s)	70, 140, 147, 588
BstKTI	GATC	2 cut(s)	182, 501
BstMAI	GTCTC	4 cut(s)	103, 154, 498, 514
BstMBI	GATC	2 cut(s)	179, 498
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 144
BstSFI	CTRYAG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	349
BstUI	CGCG	2 cut(s)	74, 147
BstV1I	GCAGC	4 cut(s)	33, 370, 462, 550
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	4 cut(s)	113, 223, 320, 442
BsuTUI	ATCGAT	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	286, 548
BtsIMutI	CAGTG	1 cut(s)	253
BtuMI	TCGCGA	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	4 cut(s)	72, 76, 221, 480
CfoI	GCGC	4 cut(s)	70, 140, 147, 588
Cfr10I	RCCGGY	1 cut(s)	349
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	1 cut(s)	267
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	2 cut(s)	141, 447
DpnI	GATC	2 cut(s)	181, 500
DpnII	GATC	2 cut(s)	179, 498
Ecl136II	GAGCTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	175
Eco147I	AGGCCT	2 cut(s)	113, 442
Eco24I	GRGCYC	1 cut(s)	80
Eco31I	GGTCTC	2 cut(s)	498, 514
Eco32I	GATATC	2 cut(s)	166, 232
Eco47III	AGCGCT	1 cut(s)	587
Eco53kI	GAGCTC	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	78
EcoRV	GATATC	2 cut(s)	166, 232
EcoT14I	CCWWGG	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	175
Esp3I	CGTCTC	2 cut(s)	103, 154
FaeI	CATG	1 cut(s)	270
FaiI	YATR	4 cut(s)	195, 268, 296, 489
FatI	CATG	1 cut(s)	266
Fnu4HI	GCNGC	4 cut(s)	22, 384, 476, 564
FokI	GGATG	2 cut(s)	293, 535
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	4 cut(s)	22, 384, 476, 564
FspBI	CTAG	2 cut(s)	422, 543
GlaI	GCGC	4 cut(s)	69, 139, 146, 587
GluI	GCNGC	4 cut(s)	22, 384, 476, 564
HaeII	RGCGCY	3 cut(s)	71, 141, 589
HaeIII	GGCC	4 cut(s)	113, 223, 320, 442
HapII	CCGG	3 cut(s)	135, 350, 558
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	4 cut(s)	70, 140, 147, 588
Hin1II	CATG	1 cut(s)	270
Hin6I	GCGC	4 cut(s)	68, 138, 145, 586
HinP1I	GCGC	4 cut(s)	68, 138, 145, 586
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	4 cut(s)	10, 83, 395, 461
HpaII	CCGG	3 cut(s)	135, 350, 558
Hpy166II	GTNNAC	3 cut(s)	60, 347, 532
Hpy188I	TCNGA	2 cut(s)	82, 498
Hpy188III	TCNNGA	4 cut(s)	73, 227, 422, 446
Hpy8I	GTNNAC	3 cut(s)	60, 347, 532
HpyAV	CCTTC	2 cut(s)	100, 103
HpyCH4V	TGCA	4 cut(s)	284, 347, 434, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 144
HpyF3I	CTNAG	2 cut(s)	141, 447
Hsp92II	CATG	1 cut(s)	270
HspAI	GCGC	4 cut(s)	68, 138, 145, 586
Kzo9I	GATC	2 cut(s)	179, 498
Lsp1109I	GCAGC	4 cut(s)	33, 370, 462, 550
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	2 cut(s)	422, 543
MalI	GATC	2 cut(s)	181, 500
MboI	GATC	2 cut(s)	179, 498
MboII	GAAGA	3 cut(s)	19, 174, 226
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	2 cut(s)	80, 349
MluCI	AATT	2 cut(s)	311, 411
MlyI	GAGTC	3 cut(s)	77, 404, 455
MnlI	CCTC	9 cut(s)	124, 128, 234, 310, 323, 429, 453, 465, 566
MseI	TTAA	2 cut(s)	339, 468
MspI	CCGG	3 cut(s)	135, 350, 558
Mva1269I	GAATGC	1 cut(s)	369
MvnI	CGCG	2 cut(s)	74, 147
MwoI	GCNNNNNNNGC	2 cut(s)	44, 144
NdeII	GATC	2 cut(s)	179, 498
NlaIII	CATG	1 cut(s)	270
NmeAIII	GCCGAG	1 cut(s)	14
NruI	TCGCGA	1 cut(s)	74
PaqCI	CACCTGC	1 cut(s)	275
PceI	AGGCCT	2 cut(s)	113, 442
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PctI	GAATGC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	23, 385, 477, 565
PleI	GAGTC	3 cut(s)	77, 403, 455
PpsI	GAGTC	3 cut(s)	77, 403, 455
Psp124BI	GAGCTC	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	179
RruI	TCGCGA	1 cut(s)	74
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	339, 468
SatI	GCNGC	4 cut(s)	22, 384, 476, 564
Sau3AI	GATC	2 cut(s)	179, 498
SchI	GAGTC	3 cut(s)	77, 404, 455
SduI	GDGCHC	2 cut(s)	80, 349
SetI	ASST	5 cut(s)	49, 80, 206, 221, 289
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	389
SmlI	CTYRAG	3 cut(s)	128, 205, 225
SmoI	CTYRAG	3 cut(s)	128, 205, 225
Sse9I	AATT	2 cut(s)	311, 411
SseBI	AGGCCT	2 cut(s)	113, 442
SsiI	CCGC	2 cut(s)	38, 367
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	2 cut(s)	422, 543
SstI	GAGCTC	1 cut(s)	80
StuI	AGGCCT	2 cut(s)	113, 442
StyI	CCWWGG	1 cut(s)	175
TaqI	TCGA	2 cut(s)	162, 237
TasI	AATT	2 cut(s)	311, 411
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	339, 468
Tru9I	TTAA	2 cut(s)	339, 468
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	4 cut(s)	21, 383, 475, 563
TspDTI	ATGAA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	267
VneI	GTGCAC	1 cut(s)	345
XbaI	TCTAGA	1 cut(s)	421
XspI	CTAG	2 cut(s)	422, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.