pycom111g00390

Translocon-associated protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0009086
Physical Location & Seq
Reverse (-)
280431 .. 282673
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g00390.2

Sequence Viewer

Length: 582 bp
ATGGCGATTCCGATCACCAACGCCCTCCTCTCGTCGGCGGTAGCTCTCTTTCTGTTCACGTCGGCGCTTGCGAGCTCCGACGTGCCCTTCATCGTCACCCACAAGAAGGCCTCCCTCAACCGGCTTAAGTCCGGCGCCGAGCGCGTCCTTGTCTCCATCGACATCTACAACCAAGGATCTTCCACGGCTTATGATGTAAGCTTGAGTGATGAGACCTGGCCTCGGGATATCTTCGATGGTGTTAGTGGTAACACTTCCAAGTCATGGGAAAGGCTTGATGCAGGTGGCATTATATCTCACTCTTTTGAATTGGAGGGCAAAGAAAAATTACTTTTTAATGGTGCACCAGCTCTTATTACATTCCGCATTCCCACAAAGGCTGCTTTACAGGAGTCTTATTCAACTCCAATATTTCCTTTAGATGTTCTTGCAGACAGGCCTCCTGAGAAGAAGTTTGAGTGGAGGCTTCTGGCAAAGTATGGGTCTCTGATCTCTGTGGTGTCCATTGTGGTTCTATTTGTGTACCTGGTTGCCACTCCATCCAAATCCGGTGTGGCAAAAGGGAGCAAGAAGAAGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
TRAP_beta

Protein Analysis

194

Amino Acids

20.98

Weight (kDa)

9.4

Isoelectric Point (pI)

21.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 264
AccII CGCG 1 cut(s) 144
AciI CCGC 2 cut(s) 38, 364
AclWI GGATC 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 135
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 5 cut(s) 34, 106, 120, 222, 264
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 308, 402
AjiI CACGTC 2 cut(s) 60, 82
AjnI CCWGG 2 cut(s) 215, 525
AluBI AGCT 4 cut(s) 44, 75, 201, 350
AluI AGCT 4 cut(s) 44, 75, 201, 350
Alw21I GWGCWC 2 cut(s) 77, 346
Alw26I GTCTC 3 cut(s) 157, 206, 489
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 3 cut(s) 108, 218, 437
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 380
ArsI GACNNNNNNTTYG 2 cut(s) 467, 499
AspLEI GCGC 3 cut(s) 67, 137, 144
AsuHPI GGTGA 2 cut(s) 7, 88
AvaI CYCGRG 1 cut(s) 222
BaeGI GKGCMC 2 cut(s) 87, 346
BanI GGYRCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 77
Bbv12I GWGCWC 2 cut(s) 77, 346
BbvI GCAGC 1 cut(s) 367
BccI CCATC 3 cut(s) 164, 230, 547
BceAI ACGGC 1 cut(s) 201
BciT130I CCWGG 2 cut(s) 217, 527
BcoDI GTCTC 3 cut(s) 157, 206, 489
BfoI RGCGCY 2 cut(s) 68, 138
BfrI CTTAAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 272
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 2 cut(s) 217, 527
BmeT110I CYCGRG 1 cut(s) 222
BmgBI CACGTC 2 cut(s) 60, 82
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 217, 527
BmsI GCATC 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 2 cut(s) 206, 489
BsaJI CCNNGG 3 cut(s) 172, 183, 221
BsaWI WCCGGW 1 cut(s) 548
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 106, 120, 222, 264
Bse118I RCCGGY 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 2 cut(s) 217, 527
BseDI CCNNGG 3 cut(s) 172, 183, 221
BseGI GGATG 1 cut(s) 539
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 5 cut(s) 34, 106, 120, 222, 264
BseMII CTCAG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 17
BseSI GKGCMC 2 cut(s) 87, 346
BseXI GCAGC 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 3 cut(s) 110, 220, 439
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 2 cut(s) 77, 346
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 3 cut(s) 121, 132, 549
BslI CCNNNNNNNGG 5 cut(s) 34, 106, 120, 222, 264
BsmAI GTCTC 3 cut(s) 157, 206, 489
BsmI GAATGC 1 cut(s) 366
BsnI GGCC 3 cut(s) 110, 220, 439
Bso31I GGTCTC 2 cut(s) 206, 489
BsoBI CYCGRG 1 cut(s) 222
Bsp1286I GDGCHC 3 cut(s) 77, 87, 346
Bsp143I GATC 3 cut(s) 12, 176, 489
BspACI CCGC 2 cut(s) 38, 364
BspANI GGCC 3 cut(s) 110, 220, 439
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 272
BspPI GGATC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 134
BspTI CTTAAG 1 cut(s) 125
BspTNI GGTCTC 2 cut(s) 206, 489
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 3 cut(s) 172, 183, 221
BssMI GATC 3 cut(s) 12, 176, 489
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 172
Bst2UI CCWGG 2 cut(s) 217, 527
BstACI GRCGYC 1 cut(s) 135
BstAFI CTTAAG 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 69, 73
BstDEI CTNAG 1 cut(s) 444
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 539
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 2 cut(s) 68, 138
BstHHI GCGC 3 cut(s) 67, 137, 144
BstKTI GATC 3 cut(s) 15, 179, 492
BstMAI GTCTC 3 cut(s) 157, 206, 489
BstMBI GATC 3 cut(s) 12, 176, 489
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 2 cut(s) 217, 527
BstSCI CCNGG 2 cut(s) 215, 525
BstSLI GKGCMC 2 cut(s) 87, 346
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 3 cut(s) 110, 220, 439
BtgI CCRYGG 1 cut(s) 183
BtrI CACGTC 2 cut(s) 60, 82
BtsCI GGATG 1 cut(s) 539
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 2 cut(s) 69, 73
CfoI GCGC 3 cut(s) 67, 137, 144
Cfr10I RCCGGY 1 cut(s) 120
CseI GACGC 1 cut(s) 133
CsiI ACCWGGT 1 cut(s) 525
Csp6I GTAC 1 cut(s) 523
CviAII CATG 1 cut(s) 264
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 1 cut(s) 444
DinI GGCGCC 1 cut(s) 136
DpnI GATC 3 cut(s) 14, 178, 491
DpnII GATC 3 cut(s) 12, 176, 489
Ecl136II GAGCTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 172
Eco147I AGGCCT 2 cut(s) 110, 439
Eco24I GRGCYC 1 cut(s) 77
Eco31I GGTCTC 2 cut(s) 206, 489
Eco32I GATATC 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 215, 525
EcoRV GATATC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 77
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 1 cut(s) 267
FaiI YATR 4 cut(s) 192, 265, 293, 480
FatI CATG 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 526
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 381
GlaI GCGC 3 cut(s) 66, 136, 143
GluI GCNGC 1 cut(s) 381
HaeII RGCGCY 2 cut(s) 68, 138
HaeIII GGCC 3 cut(s) 110, 220, 439
HapII CCGG 3 cut(s) 121, 132, 549
HgaI GACGC 1 cut(s) 133
HhaI GCGC 3 cut(s) 67, 137, 144
Hin1I GRCGYC 1 cut(s) 135
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 3 cut(s) 65, 135, 142
HinP1I GCGC 3 cut(s) 65, 135, 142
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 2 cut(s) 7, 392
HpaII CCGG 3 cut(s) 121, 132, 549
HphI GGTGA 2 cut(s) 7, 88
Hpy166II GTNNAC 3 cut(s) 57, 344, 523
Hpy188I TCNGA 3 cut(s) 12, 79, 489
Hpy188III TCNNGA 2 cut(s) 224, 443
Hpy8I GTNNAC 3 cut(s) 57, 344, 523
Hpy99I CGWCG 3 cut(s) 37, 64, 83
HpyAV CCTTC 2 cut(s) 97, 100
HpyCH4IV ACGT 2 cut(s) 59, 81
HpyCH4V TGCA 3 cut(s) 281, 344, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 2 cut(s) 59, 81
Hsp92I GRCGYC 1 cut(s) 135
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 3 cut(s) 65, 135, 142
KasI GGCGCC 1 cut(s) 134
Kzo9I GATC 3 cut(s) 12, 176, 489
LmnI GCTCC 2 cut(s) 80, 564
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 1 cut(s) 525
MaeII ACGT 2 cut(s) 59, 81
MaeIII GTNAC 2 cut(s) 94, 248
MalI GATC 3 cut(s) 14, 178, 491
MboI GATC 3 cut(s) 12, 176, 489
MboII GAAGA 3 cut(s) 171, 223, 460
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 3 cut(s) 77, 87, 346
MluCI AATT 2 cut(s) 308, 326
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 8 cut(s) 35, 38, 121, 125, 231, 307, 450, 456
MseI TTAA 3 cut(s) 126, 336, 580
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 3 cut(s) 121, 132, 549
MspR9I CCNGG 2 cut(s) 217, 527
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 2 cut(s) 217, 527
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 141
NarI GGCGCC 1 cut(s) 135
NdeII GATC 3 cut(s) 12, 176, 489
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 94
PaqCI CACCTGC 1 cut(s) 272
PceI AGGCCT 2 cut(s) 110, 439
PcsI WCGNNNNNNNCGW 1 cut(s) 68
PctI GAATGC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 1 cut(s) 400
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 400
Psp124BI GAGCTC 1 cut(s) 77
Psp6I CCWGG 2 cut(s) 215, 525
PspGI CCWGG 2 cut(s) 215, 525
PspN4I GGNNCC 1 cut(s) 136
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
SacI GAGCTC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 126, 336, 580
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 3 cut(s) 12, 176, 489
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 217, 527
SduI GDGCHC 3 cut(s) 77, 87, 346
SetI ASST 9 cut(s) 46, 62, 77, 84, 203, 218, 286, 352, 528
SexAI ACCWGGT 1 cut(s) 525
SfaNI GCATC 1 cut(s) 268
SfoI GGCGCC 1 cut(s) 136
SmlI CTYRAG 2 cut(s) 125, 202
SmoI CTYRAG 2 cut(s) 125, 202
Sse9I AATT 2 cut(s) 308, 326
SseBI AGGCCT 2 cut(s) 110, 439
SsiI CCGC 2 cut(s) 38, 364
SspDI GGCGCC 1 cut(s) 134
SspI AATATT 1 cut(s) 411
SstI GAGCTC 1 cut(s) 77
StuI AGGCCT 2 cut(s) 110, 439
StyD4I CCNGG 2 cut(s) 215, 525
StyI CCWWGG 1 cut(s) 172
TaiI ACGT 2 cut(s) 62, 84
TaqI TCGA 2 cut(s) 159, 234
TasI AATT 2 cut(s) 308, 326
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 3 cut(s) 126, 336, 580
Tru9I TTAA 3 cut(s) 126, 336, 580
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 264
Vha464I CTTAAG 1 cut(s) 125
VneI GTGCAC 1 cut(s) 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.