Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009086

Physical Location & Seq

Genomic Coordinates Reverse (-)

298138 .. 300604

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g00420.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTACCACTTATATTTCTGGGTTTTCCTTTGGTCTGTAAGTGTGAATTTAACATTTTTCCGAGTTGAGGATCCCAAGCAAACGGGTCCAACCAAACCTCACCTCCCCTCACCTCAGCGACTCCGTCACGACTCACCACCTCCATCCGAAATCCAAATGGCGATTCCGATCGGCAGCGCTCTCCTCTCGACGGTGGTAGCTCTCTTGCTATTCACGTCGGCGCTCGCGAGCTCAGAGTTGCCCTTCATCATCGCCCACAAGAAGGCCTCCCTCAACCGGCTCAAGTCCGGCGTCGAGCGCGTCCTTGTCTCCATCGACATCTACAACCAAGGATCGTTCTTAACGGCTTATGATGTAAGCTTGAGTGATGATAGCTGGCCTCAAGATATCTTTGAGGTTGTCAGCGGTAACACTTCCAAGTCATGGGAAAGGCTTGATGCAGGTGGCATTGTATCCCACTCCTTTGAATTGGAGGCCAAAGAAAAATTACTTTTCAACGGTGCACCAGCTCTTATTACATTCCGCATTCCCACAAAGGCTGCTTTACAGGAGTCTTATTCAACTCCAATATTTCCTTTGGATGTTCTGGCAGACAGGCCTCCTGAGAAGAAGTTTGAATGGGTTAAGAGGTTTCTGGCAAAGTACGGGTCTCTGATCTCTGTTGTCTCCATTGTGGTTCTATTTGTGTACCTGGTTGCCAGTCCATCCAAATCCGGTGCTGCAAAAGGGAGCAAGAAGAAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

TRAP_beta

Protein Analysis

249

Amino Acids

27.54

Weight (kDa)

9.4

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14030 AT5G14030 AT5G14030 AT5G14030 AT5G14030
fragaria_vesca	FvH4_6g54110 FvH4_6g54110 FvH4_6g54110 FvH4_6g54110 FvH4_6g54110
malus_domestica	MD09G1005300.v1.1 MD17G1009400.v1.1
prunus_persica	Prupe.3G311500_v2.0.a1
pyrus_communis	pycom111g00390 pycom17g00420
rosa_chinensis	RchiOBHm_Chr2g0176281
rosa_laevigata	RLG00000022398
rosa_multiflora	Rmu_co8476029.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076610
rosa_rugosa	Rorug02G0592900
rosa_samantha	Rh2BG682700
rosa_wichuraiana	Rw2G055050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	431
Acc36I	ACCTGC	1 cut(s)	431
AccB7I	CCANNNNNTGG	1 cut(s)	423
AccII	CGCG	2 cut(s)	227, 300
AciI	CCGC	2 cut(s)	405, 523
AclWI	GGATC	3 cut(s)	65, 78, 340
AcsI	RAATTY	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	3 cut(s)	5, 644, 689
AfeI	AGCGCT	1 cut(s)	178
AfiI	CCNNNNNNNGG	5 cut(s)	67, 190, 262, 276, 423
AgsI	TTSAA	4 cut(s)	467, 496, 561, 617
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	1 cut(s)	690
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	5 cut(s)	200, 231, 360, 375, 509
AluI	AGCT	5 cut(s)	200, 231, 360, 375, 509
Alw21I	GWGCWC	2 cut(s)	233, 505
Alw26I	GTCTC	3 cut(s)	313, 654, 670
Alw44I	GTGCAC	1 cut(s)	501
AlwI	GGATC	3 cut(s)	65, 78, 340
Aor51HI	AGCGCT	1 cut(s)	178
AoxI	GGCC	4 cut(s)	264, 377, 474, 596
ApaLI	GTGCAC	1 cut(s)	501
ApeKI	GCWGC	3 cut(s)	174, 539, 719
ApoI	RAATTY	1 cut(s)	46
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AspLEI	GCGC	3 cut(s)	179, 223, 300
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	3 cut(s)	92, 102, 126
AvaII	GGWCC	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	505
BamHI	GGATCC	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	233
Bbv12I	GWGCWC	2 cut(s)	233, 505
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	186, 526, 706
BccI	CCATC	3 cut(s)	151, 320, 712
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	1 cut(s)	692
BciVI	GTATCC	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	313, 654, 670
BfoI	RGCGCY	2 cut(s)	180, 224
BfuAI	ACCTGC	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	463
BisI	GCNGC	3 cut(s)	175, 540, 720
BlsI	GCNGC	3 cut(s)	176, 541, 721
Bme1390I	CCNGG	1 cut(s)	692
Bme18I	GGWCC	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	72, 87
BmrFI	CCNGG	1 cut(s)	692
BmsI	GCATC	1 cut(s)	427
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	3 cut(s)	266, 366, 382
BsaBI	GATNNNNATC	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	654
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	713
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 190, 262, 276, 423
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	699
Bse8I	GATNNNNATC	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	692
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	143, 586, 704
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	5 cut(s)	67, 190, 262, 276, 423
BseMII	CTCAG	3 cut(s)	128, 246, 594
BseNI	ACTGG	1 cut(s)	699
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	3 cut(s)	186, 526, 706
Bsh1236I	CGCG	2 cut(s)	227, 300
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	4 cut(s)	266, 379, 476, 598
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	2 cut(s)	233, 505
BsiSI	CCGG	3 cut(s)	277, 288, 714
BslI	CCNNNNNNNGG	5 cut(s)	67, 190, 262, 276, 423
BsmAI	GTCTC	3 cut(s)	313, 654, 670
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	4 cut(s)	266, 379, 476, 598
Bso31I	GGTCTC	1 cut(s)	654
Bsp1286I	GDGCHC	2 cut(s)	233, 505
Bsp143I	GATC	4 cut(s)	70, 168, 332, 654
Bsp68I	TCGCGA	1 cut(s)	227
BspACI	CCGC	2 cut(s)	405, 523
BspANI	GGCC	4 cut(s)	266, 379, 476, 598
BspCNI	CTCAG	3 cut(s)	127, 245, 595
BspFNI	CGCG	2 cut(s)	227, 300
BspLI	GGNNCC	2 cut(s)	72, 87
BspMI	ACCTGC	1 cut(s)	431
BspPI	GGATC	3 cut(s)	65, 78, 340
BspTNI	GGTCTC	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	699
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	4 cut(s)	70, 168, 332, 654
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	692
Bst4CI	ACNGT	2 cut(s)	193, 500
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	225, 229, 377
BstDEI	CTNAG	3 cut(s)	114, 232, 603
BstF5I	GGATG	3 cut(s)	143, 586, 704
BstFNI	CGCG	2 cut(s)	227, 300
BstH2I	RGCGCY	2 cut(s)	180, 224
BstHHI	GCGC	3 cut(s)	179, 223, 300
BstKTI	GATC	4 cut(s)	73, 171, 335, 657
BstMAI	GTCTC	3 cut(s)	313, 654, 670
BstMBI	GATC	4 cut(s)	70, 168, 332, 654
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNI	CCWGG	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	505
BstUI	CGCG	2 cut(s)	227, 300
BstV1I	GCAGC	3 cut(s)	186, 526, 706
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	463
BsuRI	GGCC	4 cut(s)	266, 379, 476, 598
BtgZI	GCGATG	1 cut(s)	235
BtrI	CACGTC	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	143, 586, 704
BtuMI	TCGCGA	1 cut(s)	227
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	3 cut(s)	225, 229, 377
CfoI	GCGC	3 cut(s)	179, 223, 300
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	86
CseI	GACGC	2 cut(s)	280, 289
CsiI	ACCWGGT	1 cut(s)	690
Csp6I	GTAC	3 cut(s)	4, 643, 688
CviAII	CATG	1 cut(s)	423
CviQI	GTAC	3 cut(s)	4, 643, 688
DdeI	CTNAG	3 cut(s)	114, 232, 603
DpnI	GATC	4 cut(s)	72, 170, 334, 656
DpnII	GATC	4 cut(s)	70, 168, 332, 654
Ecl136II	GAGCTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	328
Eco147I	AGGCCT	2 cut(s)	266, 598
Eco24I	GRGCYC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	86
Eco47III	AGCGCT	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	690
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	1 cut(s)	426
FaiI	YATR	3 cut(s)	13, 351, 424
FatI	CATG	1 cut(s)	422
Fnu4HI	GCNGC	3 cut(s)	175, 540, 720
FokI	GGATG	3 cut(s)	130, 593, 691
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	175, 540, 720
GlaI	GCGC	3 cut(s)	178, 222, 299
GluI	GCNGC	3 cut(s)	175, 540, 720
HaeII	RGCGCY	2 cut(s)	180, 224
HaeIII	GGCC	4 cut(s)	266, 379, 476, 598
HapII	CCGG	3 cut(s)	277, 288, 714
HgaI	GACGC	2 cut(s)	280, 289
HhaI	GCGC	3 cut(s)	179, 223, 300
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	426
Hin6I	GCGC	3 cut(s)	177, 221, 298
HinP1I	GCGC	3 cut(s)	177, 221, 298
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	4 cut(s)	120, 131, 163, 551
HpaII	CCGG	3 cut(s)	277, 288, 714
HphI	GGTGA	3 cut(s)	92, 102, 126
Hpy166II	GTNNAC	2 cut(s)	503, 688
Hpy188I	TCNGA	5 cut(s)	62, 148, 168, 235, 654
Hpy188III	TCNNGA	5 cut(s)	128, 187, 226, 383, 602
Hpy8I	GTNNAC	2 cut(s)	503, 688
Hpy99I	CGWCG	3 cut(s)	193, 220, 296
HpyAV	CCTTC	2 cut(s)	253, 256
HpyCH4III	ACNGT	2 cut(s)	193, 500
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	440, 503, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	3 cut(s)	114, 232, 603
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	426
HspAI	GCGC	3 cut(s)	177, 221, 298
Kzo9I	GATC	4 cut(s)	70, 168, 332, 654
LmnI	GCTCC	1 cut(s)	729
Lsp1109I	GCAGC	3 cut(s)	186, 526, 706
LweI	GCATC	1 cut(s)	427
MabI	ACCWGGT	1 cut(s)	690
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	125, 407
MalI	GATC	4 cut(s)	72, 170, 334, 656
MboI	GATC	4 cut(s)	70, 168, 332, 654
MboII	GAAGA	1 cut(s)	619
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	2 cut(s)	233, 505
MluCI	AATT	3 cut(s)	46, 467, 485
MlyI	GAGTC	3 cut(s)	114, 125, 560
MmeI	TCCRAC	1 cut(s)	113
MseI	TTAA	4 cut(s)	50, 341, 624, 745
MspA1I	CMGCKG	1 cut(s)	405
MspI	CCGG	3 cut(s)	277, 288, 714
MspR9I	CCNGG	1 cut(s)	692
Mva1269I	GAATGC	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	692
MvnI	CGCG	2 cut(s)	227, 300
MwoI	GCNNNNNNNGC	1 cut(s)	297
NdeII	GATC	4 cut(s)	70, 168, 332, 654
NlaIII	CATG	1 cut(s)	426
NlaIV	GGNNCC	2 cut(s)	72, 87
NmuCI	GTSAC	1 cut(s)	125
NruI	TCGCGA	1 cut(s)	227
PaqCI	CACCTGC	1 cut(s)	431
PceI	AGGCCT	2 cut(s)	266, 598
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PctI	GAATGC	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	163
PflFI	GACNNNGTC	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	423
PkrI	GCNGC	3 cut(s)	176, 541, 721
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	3 cut(s)	114, 125, 559
PpsI	GAGTC	3 cut(s)	114, 125, 559
Psp124BI	GAGCTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	690
PspGI	CCWGG	1 cut(s)	690
PspN4I	GGNNCC	2 cut(s)	72, 87
PspPI	GGNCC	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	123
PvuI	CGATCG	1 cut(s)	171
RruI	TCGCGA	1 cut(s)	227
RsaI	GTAC	3 cut(s)	5, 644, 689
RsaNI	GTAC	3 cut(s)	4, 643, 688
SacI	GAGCTC	1 cut(s)	233
SaqAI	TTAA	4 cut(s)	50, 341, 624, 745
SatI	GCNGC	3 cut(s)	175, 540, 720
Sau3AI	GATC	4 cut(s)	70, 168, 332, 654
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	3 cut(s)	114, 125, 560
ScrFI	CCNGG	1 cut(s)	692
SduI	GDGCHC	2 cut(s)	233, 505
SexAI	ACCWGGT	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	427
SinI	GGWCC	1 cut(s)	86
SmlI	CTYRAG	3 cut(s)	281, 361, 381
SmoI	CTYRAG	3 cut(s)	281, 361, 381
Sse9I	AATT	3 cut(s)	46, 467, 485
SseBI	AGGCCT	2 cut(s)	266, 598
SsiI	CCGC	2 cut(s)	405, 523
SspI	AATATT	1 cut(s)	570
SstI	GAGCTC	1 cut(s)	233
StuI	AGGCCT	2 cut(s)	266, 598
StyD4I	CCNGG	1 cut(s)	690
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	2 cut(s)	193, 500
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	3 cut(s)	188, 294, 315
TasI	AATT	3 cut(s)	46, 467, 485
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	4 cut(s)	50, 341, 624, 745
Tru9I	TTAA	4 cut(s)	50, 341, 624, 745
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	3 cut(s)	174, 539, 719
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	1 cut(s)	113
Tth111I	GACNNNGTC	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	423
VneI	GTGCAC	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.