FvH4_6g54440

Syntaxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016910
Physical Location & Seq
Forward (+)
39741885 .. 39744706
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g54440.t2

Sequence Viewer

Length: 807 bp
ATGAGCTTTCAAGATGTGCAGAATGGCGGAGGAGGAAAGGGAAAGAAGGCGTCAGCATCTCCGTCGCAGGCGGTGGCTGCCGGCATATTTCAGATCAACACTGCCGTTGCCACTTTCCGTCGACTCGTTGATGCCATCGGAACTGCCAAGGATACTCCCGATCACCGCCAAAAGCTGCACAAAACGAGGCAACGCATACTGGAGCTCGTCAAAGACACCTCTGCGAAACTCAAATCCCTAAGCGAATCTGATCGCCAGAGCAATGTCAATCCCCGTAAGCAGATTGAAGATGCCAAGCTTGCAAGAGATTTTCAAACCACATTGCAAGAGTTCCAGAAAGTTCAACATCTTGCCTCCGAGCGCGAGTCTACTTACATGGCAACAGCGACGGCAACCTCTGCTGCCTCTGCCTCTGCCTCTGGGGAGCATTTGGAACCAACAGGGGATGAGTACCGTCAGCCTTTCCTTCAGGGCCAAAAGAGACAAGAAGTGGTGCTGCTGGATAATGAGATTGGTTTCAATGAGGCAATAATTGAGGAAAGGGAACAGGGTATTCGAGATATAGAAGAACAAATTGGAGAAGCTAGTGAAATATTCAAGGACCTCGCAGTTCTTGTTCATGAGCAAGGTGTAGTCATTGATGACATTCATTCAAATATTGACAACTCTTCTGCTGCAACGACCCAAGCTAGAGTTCAGCTATCGAAGGCTTCCAAAGGTGTTAAAACGAGATCATCGTGGTGTTGGTGGGTGCTGGCAATCGTTGTAGTGGTGATTGTAGTTGTCCTCATCATCCTTATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE Syntaxin_2

Protein Analysis

269

Amino Acids

29.46

Weight (kDa)

6.11

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin_2 PF14523 22 - 159 1.1e-31 Syntaxin-like protein
SNARE PF05739 212 - 263 2.3e-10 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016910)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54440 FvH4_6g54440
malus_domestica MD09G1001200.v1.1
prunus_persica Prupe.3G315000_v2.0.a1
pyrus_communis pycom111g00100
rosa_chinensis RchiOBHm_Chr2g0176691
rosa_laevigata RLG00000022436
rosa_multiflora Rmu_ssc0000468.1_g000011
rosa_rugosa Rorug02G0597600
rosa_samantha Rh2AG675000 Rh2BG686100 Rh2CG649400 Rh2DG700300
rosa_wichuraiana Rw2G055400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 121, 368
AccII CGCG 1 cut(s) 363
AciI CCGC 3 cut(s) 27, 71, 166
AcuI CTGAAG 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 452
AgsI TTSAA 7 cut(s) 11, 287, 314, 344, 520, 598, 654
AjuI GAANNNNNNNTTGG 4 cut(s) 558, 590, 678, 710
AluBI AGCT 7 cut(s) 6, 175, 205, 298, 584, 689, 700
AluI AGCT 7 cut(s) 6, 175, 205, 298, 584, 689, 700
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 475
AoxI GGCC 1 cut(s) 472
ApeKI GCWGC 5 cut(s) 77, 175, 401, 496, 674
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 2 cut(s) 472, 601
AsuHPI GGTGA 2 cut(s) 155, 784
AvaII GGWCC 1 cut(s) 601
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 5 cut(s) 64, 162, 388, 483, 661
BccI CCATC 1 cut(s) 143
BceAI ACGGC 2 cut(s) 89, 405
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciVI GTATCC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 2 cut(s) 585, 690
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 5 cut(s) 78, 176, 402, 497, 675
BlsI GCNGC 5 cut(s) 79, 177, 403, 498, 676
Bme18I GGWCC 1 cut(s) 601
BmgT120I GGNCC 2 cut(s) 472, 601
BmiI GGNNCC 1 cut(s) 435
BmsI GCATC 3 cut(s) 65, 121, 280
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 147
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 2 cut(s) 268, 320
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 451, 792
BseMI GCAATG 2 cut(s) 268, 320
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 5 cut(s) 64, 162, 388, 483, 661
BsgI GTGCAG 2 cut(s) 38, 161
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 1 cut(s) 474
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 475
BsnI GGCC 1 cut(s) 474
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 4 cut(s) 93, 160, 250, 731
BspACI CCGC 3 cut(s) 27, 71, 166
BspANI GGCC 1 cut(s) 474
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 1 cut(s) 435
BsrDI GCAATG 2 cut(s) 268, 320
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 4 cut(s) 93, 160, 250, 731
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 673
BstACI GRCGYC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 4 cut(s) 69, 82, 300, 756
BstDEI CTNAG 1 cut(s) 239
BstF5I GGATG 2 cut(s) 451, 792
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 4 cut(s) 96, 163, 253, 734
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 4 cut(s) 93, 160, 250, 731
BstMWI GCNNNNNNNGC 4 cut(s) 77, 299, 398, 407
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 5 cut(s) 64, 162, 388, 483, 661
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 474
BtsCI GGATG 2 cut(s) 451, 792
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 69, 82, 300, 756
CciI TCATGA 1 cut(s) 619
CfoI GCGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 472, 601
CseI GACGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 451
CviAII CATG 2 cut(s) 376, 620
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 1 cut(s) 239
DpnI GATC 4 cut(s) 95, 162, 252, 733
DpnII GATC 4 cut(s) 93, 160, 250, 731
Eam1104I CTCTTC 1 cut(s) 673
EarI CTCTTC 1 cut(s) 673
EciI GGCGGA 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 601
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 379, 623
FaiI YATR 7 cut(s) 86, 197, 377, 563, 621, 803, 805
FatI CATG 2 cut(s) 375, 619
FblI GTMKAC 2 cut(s) 121, 368
Fnu4HI GCNGC 5 cut(s) 78, 176, 402, 497, 675
FokI GGATG 2 cut(s) 458, 779
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 5 cut(s) 78, 176, 402, 497, 675
FspBI CTAG 2 cut(s) 585, 690
GlaI GCGC 1 cut(s) 362
GluI GCNGC 5 cut(s) 78, 176, 402, 497, 675
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 1 cut(s) 474
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 39
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 2 cut(s) 379, 623
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 3 cut(s) 123, 245, 365
HpaII CCGG 1 cut(s) 81
HphI GGTGA 2 cut(s) 155, 784
Hpy166II GTNNAC 2 cut(s) 122, 369
Hpy188I TCNGA 4 cut(s) 93, 140, 250, 358
Hpy188III TCNNGA 5 cut(s) 11, 158, 334, 557, 620
Hpy8I GTNNAC 2 cut(s) 122, 369
Hpy99I CGWCG 3 cut(s) 67, 123, 391
HpyAV CCTTC 3 cut(s) 40, 476, 700
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4V TGCA 5 cut(s) 19, 178, 302, 325, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 299, 398, 407
HpyF3I CTNAG 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 379, 623
HspAI GCGC 1 cut(s) 361
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 4 cut(s) 93, 160, 250, 731
LmnI GCTCC 2 cut(s) 202, 424
Lsp1109I GCAGC 5 cut(s) 64, 162, 388, 483, 661
LweI GCATC 3 cut(s) 65, 121, 280
MaeI CTAG 2 cut(s) 585, 690
MalI GATC 4 cut(s) 95, 162, 252, 733
MboI GATC 4 cut(s) 93, 160, 250, 731
MboII GAAGA 3 cut(s) 299, 578, 660
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 531, 573
MlyI GAGTC 2 cut(s) 117, 374
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 1 cut(s) 723
MslI CAYNNNNRTG 1 cut(s) 739
MspI CCGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 4 cut(s) 77, 299, 398, 407
NaeI GCCGGC 1 cut(s) 82
NdeII GATC 4 cut(s) 93, 160, 250, 731
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 379, 623
NlaIV GGNNCC 1 cut(s) 435
PagI TCATGA 1 cut(s) 619
PcsI WCGNNNNNNNCGW 1 cut(s) 734
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 5 cut(s) 79, 177, 403, 498, 676
PleI GAGTC 2 cut(s) 117, 373
PpsI GAGTC 2 cut(s) 117, 373
PpuMI RGGWCCY 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 601
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 2 cut(s) 472, 601
PspPPI RGGWCCY 1 cut(s) 601
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 739
SacI GAGCTC 1 cut(s) 207
SalI GTCGAC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 723
SatI GCNGC 5 cut(s) 78, 176, 402, 497, 675
Sau3AI GATC 4 cut(s) 93, 160, 250, 731
Sau96I GGNCC 2 cut(s) 472, 601
SchI GAGTC 2 cut(s) 117, 374
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 3 cut(s) 65, 121, 280
SinI GGWCC 1 cut(s) 601
SmiMI CAYNNNNRTG 1 cut(s) 739
Sse9I AATT 2 cut(s) 531, 573
SsiI CCGC 3 cut(s) 27, 71, 166
SspI AATATT 2 cut(s) 594, 658
SspMI CTAG 2 cut(s) 585, 690
SstI GAGCTC 1 cut(s) 207
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 455
TaqI TCGA 3 cut(s) 121, 556, 704
TasI AATT 2 cut(s) 531, 573
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 723
Tru9I TTAA 1 cut(s) 723
TscAI CASTG 1 cut(s) 106
TseI GCWGC 5 cut(s) 77, 175, 401, 496, 674
TspDTI ATGAA 2 cut(s) 608, 638
TspGWI ACGGA 2 cut(s) 51, 107
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 601
XmiI GTMKAC 2 cut(s) 121, 368
XspI CTAG 2 cut(s) 585, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.