Rorug02G0597600

Syntaxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016910
Physical Location & Seq
Forward (+)
71822414 .. 71822935
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0597600.1

Sequence Viewer

Length: 522 bp
ATGGCCGCCTATACAAGAATACAGGCATCGTCGTTTTCCTTCTATTCGTCAGCAACAAGGCGCAGGCACGACGTATTCTTGAGCTTTCGAGGCGAAGACACCCGCCACAACATAACTGAAAACCTCCACAAGGCCTTAGTCGACGCCGGCGTTCCCACGTTCAAAGACGACGTTAACCTTCAGAAGGGCAACGAGATCGCGTCCGATCTGCTCAAGGCCATACAGACATCGAGAATCGCCATCATAGTGTTCTCCAACAACTACGCGAGCTCTAGCTGGTGTCTGGATGAGTTGGTCAAGATTGTAGAGTGCAACAGGGAAGCGGGTCAGGTCATTTTGCCCATTTTCTGCGATGTGGATCCCTGTGATGTGCAGCAGCAGATGGGCACTTTTTCAGAAGCACTTGCTGTGCATGAAAGAAGTGGCAGGACCCAGGACAAGTTGGAGGCTTGGAAAGTGTCGTTGACCGAAGCGGCTAGTCAGCCTTATGGCTTTGATATGCAGGATGCTGCTACTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE Syntaxin_2

Protein Analysis

173

Amino Acids

19.39

Weight (kDa)

5.17

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 23 - 169 9.2e-45 TIR domain
TIR_2 PF13676 25 - 123 9.2e-16 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016910)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54440 FvH4_6g54440
malus_domestica MD09G1001200.v1.1
prunus_persica Prupe.3G315000_v2.0.a1
pyrus_communis pycom111g00100
rosa_chinensis RchiOBHm_Chr2g0176691
rosa_laevigata RLG00000022436
rosa_multiflora Rmu_ssc0000468.1_g000011
rosa_rugosa Rorug02G0597600
rosa_samantha Rh2AG675000 Rh2BG686100 Rh2CG649400 Rh2DG700300
rosa_wichuraiana Rw2G055400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AccII CGCG 2 cut(s) 200, 266
AciI CCGC 4 cut(s) 6, 103, 323, 473
AclWI GGATC 2 cut(s) 353, 366
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 144
AfiI CCNNNNNNNGG 2 cut(s) 130, 184
AgsI TTSAA 1 cut(s) 163
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 3 cut(s) 84, 270, 276
AluI AGCT 3 cut(s) 84, 270, 276
Alw21I GWGCWC 1 cut(s) 272
AlwI GGATC 2 cut(s) 353, 366
AoxI GGCC 3 cut(s) 3, 132, 216
ApeKI GCWGC 3 cut(s) 373, 376, 509
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 429
AvaII GGWCC 1 cut(s) 429
BaeGI GKGCMC 1 cut(s) 389
BamHI GGATCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 3 cut(s) 385, 388, 496
BccI CCATC 2 cut(s) 248, 376
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 1 cut(s) 434
BfaI CTAG 2 cut(s) 273, 477
BisI GCNGC 5 cut(s) 6, 374, 377, 474, 510
BlsI GCNGC 5 cut(s) 7, 375, 378, 475, 511
Bme1390I CCNGG 1 cut(s) 434
Bme18I GGWCC 1 cut(s) 429
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 2 cut(s) 360, 431
BmrFI CCNGG 1 cut(s) 434
BmsI GCATC 2 cut(s) 35, 496
BpiI GAAGAC 1 cut(s) 102
BpuEI CTTGAG 2 cut(s) 100, 197
BsaBI GATNNNNATC 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 432
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 184
Bse118I RCCGGY 1 cut(s) 146
Bse8I GATNNNNATC 1 cut(s) 357
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 1 cut(s) 432
BseGI GGATG 2 cut(s) 292, 511
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 130, 184
BseSI GKGCMC 1 cut(s) 389
BseXI GCAGC 3 cut(s) 385, 388, 496
BsgI GTGCAG 1 cut(s) 392
Bsh1236I CGCG 2 cut(s) 200, 266
BshFI GGCC 3 cut(s) 5, 134, 218
BsiHKAI GWGCWC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 2 cut(s) 130, 184
BsnI GGCC 3 cut(s) 5, 134, 218
Bsp1286I GDGCHC 2 cut(s) 272, 389
Bsp143I GATC 3 cut(s) 195, 205, 358
BspACI CCGC 4 cut(s) 6, 103, 323, 473
BspANI GGCC 3 cut(s) 5, 134, 218
BspFNI CGCG 2 cut(s) 200, 266
BspLI GGNNCC 2 cut(s) 360, 431
BspPI GGATC 2 cut(s) 353, 366
BsrFI RCCGGY 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 432
BssMI GATC 3 cut(s) 195, 205, 358
BssNI GRCGYC 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 65, 148, 268
BstDEI CTNAG 1 cut(s) 136
BstENI CCTNNNNNAGG 2 cut(s) 128, 182
BstF5I GGATG 2 cut(s) 292, 511
BstFNI CGCG 2 cut(s) 200, 266
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 3 cut(s) 198, 208, 361
BstMBI GATC 3 cut(s) 195, 205, 358
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 432
BstSLI GKGCMC 1 cut(s) 389
BstUI CGCG 2 cut(s) 200, 266
BstV1I GCAGC 3 cut(s) 385, 388, 496
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 3 cut(s) 5, 134, 218
BtgZI GCGATG 1 cut(s) 366
BtsCI GGATG 2 cut(s) 292, 511
Cac8I GCNNGC 3 cut(s) 65, 148, 268
CfoI GCGC 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 429
CseI GACGC 2 cut(s) 152, 189
CviAII CATG 1 cut(s) 413
DdeI CTNAG 1 cut(s) 136
DpnI GATC 3 cut(s) 197, 207, 360
DpnII GATC 3 cut(s) 195, 205, 358
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 429
Eco53kI GAGCTC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 270
EcoNI CCTNNNNNAGG 2 cut(s) 128, 182
EcoO109I RGGNCCY 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 272
FaeI CATG 1 cut(s) 416
FaiI YATR 7 cut(s) 12, 113, 221, 245, 414, 489, 500
FatI CATG 1 cut(s) 412
FauI CCCGC 2 cut(s) 110, 316
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 5 cut(s) 6, 374, 377, 474, 510
FokI GGATG 2 cut(s) 299, 518
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 5 cut(s) 6, 374, 377, 474, 510
FspBI CTAG 2 cut(s) 273, 477
GlaI GCGC 1 cut(s) 62
GluI GCNGC 5 cut(s) 6, 374, 377, 474, 510
HaeIII GGCC 3 cut(s) 5, 134, 218
HapII CCGG 1 cut(s) 147
HgaI GACGC 2 cut(s) 152, 189
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 1 cut(s) 416
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 3 cut(s) 142, 175, 465
HindII GTYRAC 3 cut(s) 142, 175, 465
HinfI GANTC 1 cut(s) 234
HpaI GTTAAC 1 cut(s) 175
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 3 cut(s) 142, 175, 465
Hpy188I TCNGA 3 cut(s) 183, 205, 397
Hpy188III TCNNGA 4 cut(s) 79, 231, 284, 298
Hpy8I GTNNAC 3 cut(s) 142, 175, 465
Hpy99I CGWCG 4 cut(s) 34, 74, 146, 173
HpyAV CCTTC 3 cut(s) 49, 178, 188
HpyCH4IV ACGT 3 cut(s) 72, 158, 171
HpyCH4V TGCA 4 cut(s) 312, 373, 412, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 3 cut(s) 72, 158, 171
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 1 cut(s) 416
HspAI GCGC 1 cut(s) 61
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
KspAI GTTAAC 1 cut(s) 175
Kzo9I GATC 3 cut(s) 195, 205, 358
Lsp1109I GCAGC 3 cut(s) 385, 388, 496
LweI GCATC 2 cut(s) 35, 496
MaeI CTAG 2 cut(s) 273, 477
MaeII ACGT 3 cut(s) 72, 158, 171
MalI GATC 3 cut(s) 197, 207, 360
MboI GATC 3 cut(s) 195, 205, 358
MboII GAAGA 1 cut(s) 107
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 2 cut(s) 272, 389
MmeI TCCRAC 2 cut(s) 279, 423
MnlI CCTC 3 cut(s) 83, 134, 439
MreI CGCCGGCG 1 cut(s) 146
MroNI GCCGGC 1 cut(s) 146
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 434
MvaI CCWGG 1 cut(s) 434
MvnI CGCG 2 cut(s) 200, 266
MwoI GCNNNNNNNGC 1 cut(s) 90
NaeI GCCGGC 1 cut(s) 148
NdeII GATC 3 cut(s) 195, 205, 358
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 2 cut(s) 360, 431
PceI AGGCCT 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 234
PkrI GCNGC 5 cut(s) 7, 375, 378, 475, 511
PpuMI RGGWCCY 1 cut(s) 429
Psp124BI GAGCTC 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 432
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 2 cut(s) 360, 431
PspPI GGNCC 1 cut(s) 429
PspPPI RGGWCCY 1 cut(s) 429
PsuI RGATCY 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 245
SacI GAGCTC 1 cut(s) 272
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 5 cut(s) 6, 374, 377, 474, 510
Sau3AI GATC 3 cut(s) 195, 205, 358
Sau96I GGNCC 1 cut(s) 429
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 2 cut(s) 272, 389
SetI ASST 9 cut(s) 75, 86, 126, 161, 174, 180, 272, 278, 333
SfaNI GCATC 2 cut(s) 35, 496
SgrAI CRCCGGYG 1 cut(s) 146
SinI GGWCC 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 79, 212
SmoI CTYRAG 2 cut(s) 79, 212
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 4 cut(s) 6, 103, 323, 473
SspMI CTAG 2 cut(s) 273, 477
SstI GAGCTC 1 cut(s) 272
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 432
TaiI ACGT 3 cut(s) 75, 161, 174
TaqI TCGA 3 cut(s) 88, 141, 230
TaqII GACCGA 1 cut(s) 482
TauI GCSGC 2 cut(s) 8, 476
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 3 cut(s) 373, 376, 509
TspDTI ATGAA 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 429
XagI CCTNNNNNAGG 2 cut(s) 128, 182
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 2 cut(s) 273, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.