MD09G1001200.v1.1

Syntaxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016910
Physical Location & Seq
Reverse (-)
186441 .. 189331
2891 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1001200.v1.1.491

Sequence Viewer

Length: 816 bp
ATGAGCTTTCAAGATGTGCAGAGTGGCGGAGGAGGAAGGGGAAGGAAGGCATCGGCGTCTCCGCCTCAGGCGGTGGCTGCGGGCATATTCCAGATCAACACTGCCGTTGGCACTTTCCGTAGAATGGTCGATGCCATCGGGACTGCCAAGGACACTCCCGATCACCGCCAGAAGCTGCACAACACGAGGCAACGCATACTTGAACTGGTAAAAGAAACGTCTGCCAAGCTCAAATCCCTCGCCCAATCTGATCGCCAATCCAATGTCAATCCGAGTAAGCAGATCGAAGATGCCAAGCTTGCAAGAGATTTCCAGACCACATTGCAAGAATTTCAGAAAGTTCAACAGCTCGCCTCTGAGCGCGAGTCTACTTACATGCCTTCCTTGCCAACTTCTGCGGCTTCCGCTTCTGCCTCCGGGGAATATCTGGAGCCTAGCAGTAGCAGCACCAGGGATCAGCACCGCCAACCTTTCCTTCAGGACCAAAAGAGGCAGGAATTACTTTTGCTTGATAATGAGGTTGCTTTCAATGAGGCCATCATTGAGGAGAGGGAACAGGGTATTCGAGACATAGAAGCACAAATCGGGGAAGCTAGTGAAATTTTCAAGGACCTTGCTGTTCTCGTTCATGAGCAGGGTGTAGTCATTGATGACATTCAATCAAACATTGACAACTCTTCCTCTGCAACGACCCAAGCTAGAGTTCAGTTAGCTAAGGCTTCCAAAGGAGTTAAATTCAGATGCTCATGGTGTTGGTGGGTGCTGGCAGTTTTGGTAGTGGTGGTCGTGATCGTCGTGGTCATCCTTATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE Syntaxin_2

Protein Analysis

272

Amino Acids

29.89

Weight (kDa)

6.14

Isoelectric Point (pI)

55.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin_2 PF14523 23 - 165 1.6e-31 Syntaxin-like protein
SNARE PF05739 215 - 266 2.2e-10 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016910)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54440 FvH4_6g54440
malus_domestica MD09G1001200.v1.1
prunus_persica Prupe.3G315000_v2.0.a1
pyrus_communis pycom111g00100
rosa_chinensis RchiOBHm_Chr2g0176691
rosa_laevigata RLG00000022436
rosa_multiflora Rmu_ssc0000468.1_g000011
rosa_rugosa Rorug02G0597600
rosa_samantha Rh2AG675000 Rh2BG686100 Rh2CG649400 Rh2DG700300
rosa_wichuraiana Rw2G055400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 368
AccII CGCG 1 cut(s) 363
AciI CCGC 8 cut(s) 27, 62, 71, 80, 166, 398, 405, 463
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 3 cut(s) 329, 600, 734
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 6 cut(s) 11, 203, 344, 529, 607, 659
AjnI CCWGG 1 cut(s) 449
AjuI GAANNNNNNNTTGG 4 cut(s) 459, 491, 687, 719
AluBI AGCT 8 cut(s) 6, 175, 229, 298, 349, 593, 698, 713
AluI AGCT 8 cut(s) 6, 175, 229, 298, 349, 593, 698, 713
Alw26I GTCTC 2 cut(s) 63, 561
AlwI GGATC 1 cut(s) 462
AlwNI CAGNNNCTG 1 cut(s) 175
AoxI GGCC 1 cut(s) 534
ApeKI GCWGC 3 cut(s) 77, 175, 444
ApoI RAATTY 3 cut(s) 329, 600, 734
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 2 cut(s) 481, 610
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 2 cut(s) 481, 610
AxyI CCTNAGG 1 cut(s) 66
BauI CACGAG 1 cut(s) 184
BbvI GCAGC 3 cut(s) 64, 162, 456
BccI CCATC 2 cut(s) 143, 545
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 451
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 63, 561
BfaI CTAG 3 cut(s) 435, 594, 699
BisI GCNGC 4 cut(s) 78, 176, 399, 445
BlsI GCNGC 4 cut(s) 79, 177, 400, 446
Bme1390I CCNGG 2 cut(s) 418, 451
Bme18I GGWCC 2 cut(s) 481, 610
BmgT120I GGNCC 2 cut(s) 481, 610
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 2 cut(s) 418, 451
BmsI GCATC 4 cut(s) 59, 121, 280, 731
BpmI CTGGAG 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 714
BpuMI CCSGG 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 3 cut(s) 147, 417, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 210
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 451
BseDI CCNNGG 3 cut(s) 147, 417, 450
BseGI GGATG 1 cut(s) 801
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 2 cut(s) 80, 348
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 45, 560
BseXI GCAGC 3 cut(s) 64, 162, 456
BsgI GTGCAG 2 cut(s) 38, 161
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 1 cut(s) 536
BsiSI CCGG 1 cut(s) 417
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 2 cut(s) 63, 561
BsmBI CGTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 1 cut(s) 536
Bsp143I GATC 6 cut(s) 93, 160, 250, 282, 454, 789
BspACI CCGC 8 cut(s) 27, 62, 71, 80, 166, 398, 405, 463
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 2 cut(s) 79, 349
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 432
BspPI GGATC 1 cut(s) 462
BsrDI GCAATG 1 cut(s) 320
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 147, 417, 450
BssMI GATC 6 cut(s) 93, 160, 250, 282, 454, 789
BssNI GRCGYC 1 cut(s) 56
BssSI CACGAG 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 451
Bst6I CTCTTC 1 cut(s) 682
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 4 cut(s) 82, 300, 351, 765
BstDEI CTNAG 3 cut(s) 66, 357, 714
BstF5I GGATG 1 cut(s) 801
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 6 cut(s) 96, 163, 253, 285, 457, 792
BstMAI GTCTC 2 cut(s) 63, 561
BstMBI GATC 6 cut(s) 93, 160, 250, 282, 454, 789
BstMWI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 404, 444
BstNI CCWGG 1 cut(s) 451
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 416, 449
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 64, 162, 456
Bsu36I CCTNAGG 1 cut(s) 66
BsuRI GGCC 1 cut(s) 536
BtsCI GGATG 1 cut(s) 801
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 82, 300, 351, 765
CaiI CAGNNNCTG 1 cut(s) 175
CciI TCATGA 1 cut(s) 628
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 2 cut(s) 481, 610
CseI GACGC 1 cut(s) 45
CviAII CATG 3 cut(s) 376, 629, 747
DdeI CTNAG 3 cut(s) 66, 357, 714
DpnI GATC 6 cut(s) 95, 162, 252, 284, 456, 791
DpnII GATC 6 cut(s) 93, 160, 250, 282, 454, 789
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
EciI GGCGGA 2 cut(s) 42, 51
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 481, 610
Eco57I CTGAAG 1 cut(s) 461
Eco81I CCTNAGG 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 610
EcoRII CCWGG 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 3 cut(s) 379, 632, 750
FaiI YATR 8 cut(s) 86, 197, 377, 572, 630, 748, 812, 814
FaqI GGGAC 1 cut(s) 154
FatI CATG 3 cut(s) 375, 628, 746
FauI CCCGC 1 cut(s) 73
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 4 cut(s) 78, 176, 399, 445
FokI GGATG 1 cut(s) 788
Fsp4HI GCNGC 4 cut(s) 78, 176, 399, 445
FspBI CTAG 3 cut(s) 435, 594, 699
GlaI GCGC 1 cut(s) 362
GluI GCNGC 4 cut(s) 78, 176, 399, 445
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 1 cut(s) 536
HapII CCGG 1 cut(s) 417
HgaI GACGC 1 cut(s) 45
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 3 cut(s) 379, 632, 750
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 1 cut(s) 365
HpaII CCGG 1 cut(s) 417
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 5 cut(s) 250, 273, 336, 358, 740
Hpy8I GTNNAC 1 cut(s) 369
Hpy99I CGWCG 1 cut(s) 797
HpyAV CCTTC 5 cut(s) 30, 36, 40, 390, 485
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 5 cut(s) 19, 178, 302, 325, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 404, 444
HpyF3I CTNAG 3 cut(s) 66, 357, 714
HpySE526I ACGT 1 cut(s) 218
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 3 cut(s) 379, 632, 750
HspAI GCGC 1 cut(s) 361
Kzo9I GATC 6 cut(s) 93, 160, 250, 282, 454, 789
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 3 cut(s) 64, 162, 456
LweI GCATC 4 cut(s) 59, 121, 280, 731
MaeI CTAG 3 cut(s) 435, 594, 699
MaeII ACGT 1 cut(s) 218
MalI GATC 6 cut(s) 95, 162, 252, 284, 456, 791
MboI GATC 6 cut(s) 93, 160, 250, 282, 454, 789
MboII GAAGA 2 cut(s) 299, 669
MluCI AATT 4 cut(s) 329, 497, 600, 734
MlyI GAGTC 1 cut(s) 374
MseI TTAA 1 cut(s) 732
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 2 cut(s) 418, 451
MvaI CCWGG 1 cut(s) 451
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 404, 444
NciI CCSGG 1 cut(s) 418
NdeII GATC 6 cut(s) 93, 160, 250, 282, 454, 789
NlaIII CATG 3 cut(s) 379, 632, 750
NlaIV GGNNCC 1 cut(s) 432
NspI RCATGY 1 cut(s) 379
PagI TCATGA 1 cut(s) 628
PcsI WCGNNNNNNNCGW 1 cut(s) 792
PkrI GCNGC 4 cut(s) 79, 177, 400, 446
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 2 cut(s) 481, 610
PspPPI RGGWCCY 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 175
SaqAI TTAA 1 cut(s) 732
SatI GCNGC 4 cut(s) 78, 176, 399, 445
Sau3AI GATC 6 cut(s) 93, 160, 250, 282, 454, 789
Sau96I GGNCC 2 cut(s) 481, 610
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 418, 451
SfaNI GCATC 4 cut(s) 59, 121, 280, 731
SinI GGWCC 2 cut(s) 481, 610
Sse9I AATT 4 cut(s) 329, 497, 600, 734
SsiI CCGC 8 cut(s) 27, 62, 71, 80, 166, 398, 405, 463
SspMI CTAG 3 cut(s) 435, 594, 699
StyD4I CCNGG 2 cut(s) 416, 449
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 1 cut(s) 221
TaqI TCGA 3 cut(s) 129, 285, 565
TasI AATT 4 cut(s) 329, 497, 600, 734
TauI GCSGC 1 cut(s) 401
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TscAI CASTG 1 cut(s) 106
TseI GCWGC 3 cut(s) 77, 175, 444
TspDTI ATGAA 1 cut(s) 617
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 481, 610
XapI RAATTY 3 cut(s) 329, 600, 734
XceI RCATGY 1 cut(s) 379
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 3 cut(s) 435, 594, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.