Rh2CG649400

Syntaxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0016910
Physical Location & Seq
Forward (+)
81764604 .. 81766942
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG649400.1

Sequence Viewer

Length: 819 bp
ATGAGCTTTCAAGATGTGCAGAATGGCGGAGGAGGAAAGGGAAAGAATGCATCCGCATCTCCGTCCCAGGCGGTGGCTGCCGGCATATTCCAGATCAACACTGCCGTTGCCACTTTCCGTCGACTGGTTGATGCCATCGGAACTGTCAAGGACACTCCCGATCACCGCCAAAAGCTGCACAATACGAGGCAACGGATACTGGGGCTTGTCAAAGACACTTCTGCTAAACTCAAATCCCTAAGCGAATCTGATCGCCACAGCAATGTCAATCCCCGTAAGCAGATTGAAGATGCCAAGCTTGCAAGAGATTTTCAAACCACATTGCAAGAATTCCAGAAAGTTCAACAGCTTGCCTCTGAGCGCGAGTCTACTTACATGCCTTCCTTACCAGCGTCAACATCAGCAACAGCAACCTCTGCTGCCTCTGCCTCTGGGGAATATTTGGAACCAACCAGGGATGAGTACCGTCAACCTTTCATTCAGGAGCAAAAGAGACAGGAAGTAGTGCTGCTGGATAATGAGATTGGTTTTAATGAGGCAATAATTGAGGAAAGGGAACAGGGTATTAAAGATATAGAAGAACAAATTGGAGAAGCTAGTGAAATATTCAGGGACCTTGCTGTTCTTGTTCATGAGCAAGGTGTAGTCATTGATGACATTCATTCAAACATTGACAACTCTTCTGCTGCAACGACCCAAGCTAGAGTTCAGCTAGCTAAGGCTTCCAAAGGTGTTAAAACGAGATCTTCGTGGTGTTGGTGGGTGCTGGCAATTGTCGTAGTGGTGATTGTAGTCGTCCTCATCATCCTTATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE Syntaxin_2

Protein Analysis

272

Amino Acids

29.98

Weight (kDa)

5.81

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin_2 PF14523 22 - 163 3.5e-31 Syntaxin-like protein
SNARE PF05739 216 - 267 1.5e-10 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016910)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54440 FvH4_6g54440
malus_domestica MD09G1001200.v1.1
prunus_persica Prupe.3G315000_v2.0.a1
pyrus_communis pycom111g00100
rosa_chinensis RchiOBHm_Chr2g0176691
rosa_laevigata RLG00000022436
rosa_multiflora Rmu_ssc0000468.1_g000011
rosa_rugosa Rorug02G0597600
rosa_samantha Rh2AG675000 Rh2BG686100 Rh2CG649400 Rh2DG700300
rosa_wichuraiana Rw2G055400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 73
AccI GTMKAC 2 cut(s) 121, 368
AccII CGCG 1 cut(s) 363
AciI CCGC 4 cut(s) 27, 54, 71, 166
AcsI RAATTY 1 cut(s) 329
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 2 cut(s) 73, 124
AgsI TTSAA 5 cut(s) 11, 287, 314, 344, 666
AjnI CCWGG 2 cut(s) 66, 452
AjuI GAANNNNNNNTTGG 4 cut(s) 570, 602, 690, 722
AluBI AGCT 8 cut(s) 6, 175, 298, 349, 596, 701, 712, 716
AluI AGCT 8 cut(s) 6, 175, 298, 349, 596, 701, 712, 716
Alw26I GTCTC 1 cut(s) 487
ApeKI GCWGC 5 cut(s) 77, 175, 419, 508, 686
ApoI RAATTY 1 cut(s) 329
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 613
AsuHPI GGTGA 2 cut(s) 155, 796
AsuNHI GCTAGC 1 cut(s) 712
AvaII GGWCC 1 cut(s) 613
BbvI GCAGC 5 cut(s) 64, 162, 406, 495, 673
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 68, 454
BciVI GTATCC 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 3 cut(s) 597, 702, 713
BfuI GTATCC 1 cut(s) 189
BglII AGATCT 1 cut(s) 743
BisI GCNGC 5 cut(s) 78, 176, 420, 509, 687
BlsI GCNGC 5 cut(s) 79, 177, 421, 510, 688
Bme1390I CCNGG 2 cut(s) 68, 454
Bme18I GGWCC 1 cut(s) 613
BmgT120I GGNCC 1 cut(s) 613
BmiI GGNNCC 2 cut(s) 447, 614
BmrFI CCNGG 2 cut(s) 68, 454
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 4 cut(s) 59, 65, 121, 280
BmtI GCTAGC 1 cut(s) 716
BmuI ACTGGG 1 cut(s) 209
Bpu10I CCTNAGC 2 cut(s) 239, 717
BsaJI CCNNGG 2 cut(s) 66, 453
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 124
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 129, 204
Bse3DI GCAATG 2 cut(s) 268, 320
BseBI CCWGG 2 cut(s) 68, 454
BseDI CCNNGG 2 cut(s) 66, 453
BseGI GGATG 3 cut(s) 50, 463, 804
BseLI CCNNNNNNNGG 2 cut(s) 73, 124
BseMI GCAATG 2 cut(s) 268, 320
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 129, 204
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 5 cut(s) 64, 162, 406, 495, 673
BsgI GTGCAG 2 cut(s) 38, 161
Bsh1236I CGCG 1 cut(s) 363
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 49, 626
BslI CCNNNNNNNGG 2 cut(s) 73, 124
BsmAI GTCTC 1 cut(s) 487
BsmFI GGGAC 2 cut(s) 49, 626
BsmI GAATGC 1 cut(s) 52
Bsp143I GATC 4 cut(s) 93, 160, 250, 743
BspACI CCGC 4 cut(s) 27, 54, 71, 166
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 447, 614
BspOI GCTAGC 1 cut(s) 716
BsrDI GCAATG 2 cut(s) 268, 320
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 2 cut(s) 129, 204
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 66, 453
BssMI GATC 4 cut(s) 93, 160, 250, 743
Bst2UI CCWGG 2 cut(s) 68, 454
Bst4CI ACNGT 2 cut(s) 145, 467
Bst6I CTCTTC 1 cut(s) 685
BstAPI GCANNNNNTGC 1 cut(s) 416
BstC8I GCNNGC 5 cut(s) 82, 300, 351, 714, 768
BstDEI CTNAG 3 cut(s) 239, 357, 717
BstF5I GGATG 3 cut(s) 50, 463, 804
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 4 cut(s) 96, 163, 253, 746
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 4 cut(s) 93, 160, 250, 743
BstMWI GCNNNNNNNGC 4 cut(s) 77, 299, 416, 425
BstNI CCWGG 2 cut(s) 68, 454
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 66, 452
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 5 cut(s) 64, 162, 406, 495, 673
BstX2I RGATCY 1 cut(s) 743
BstYI RGATCY 1 cut(s) 743
BsuI GTATCC 1 cut(s) 189
BtsCI GGATG 3 cut(s) 50, 463, 804
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 5 cut(s) 82, 300, 351, 714, 768
CciI TCATGA 1 cut(s) 631
CfoI GCGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 613
CseI GACGC 1 cut(s) 381
Csp6I GTAC 1 cut(s) 463
CviAII CATG 2 cut(s) 376, 632
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 3 cut(s) 239, 357, 717
DpnI GATC 4 cut(s) 95, 162, 252, 745
DpnII GATC 4 cut(s) 93, 160, 250, 743
Eam1104I CTCTTC 1 cut(s) 685
EarI CTCTTC 1 cut(s) 685
EciI GGCGGA 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 613
EcoO109I RGGNCCY 1 cut(s) 613
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 66, 452
EcoT22I ATGCAT 1 cut(s) 52
FaeI CATG 2 cut(s) 379, 635
FaiI YATR 6 cut(s) 86, 377, 575, 633, 815, 817
FaqI GGGAC 2 cut(s) 49, 626
FatI CATG 2 cut(s) 375, 631
FblI GTMKAC 2 cut(s) 121, 368
Fnu4HI GCNGC 5 cut(s) 78, 176, 420, 509, 687
FokI GGATG 3 cut(s) 37, 470, 791
Fsp4HI GCNGC 5 cut(s) 78, 176, 420, 509, 687
FspBI CTAG 3 cut(s) 597, 702, 713
GlaI GCGC 1 cut(s) 362
GluI GCNGC 5 cut(s) 78, 176, 420, 509, 687
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 381
HhaI GCGC 1 cut(s) 363
Hin1II CATG 2 cut(s) 379, 635
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 3 cut(s) 122, 396, 470
HindII GTYRAC 3 cut(s) 122, 396, 470
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 2 cut(s) 245, 365
HpaII CCGG 1 cut(s) 81
HphI GGTGA 2 cut(s) 155, 796
Hpy166II GTNNAC 4 cut(s) 122, 369, 396, 470
Hpy188I TCNGA 3 cut(s) 140, 250, 358
Hpy188III TCNNGA 6 cut(s) 11, 91, 158, 334, 482, 632
Hpy8I GTNNAC 4 cut(s) 122, 369, 396, 470
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 2 cut(s) 145, 467
HpyCH4V TGCA 6 cut(s) 19, 50, 178, 302, 325, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 299, 416, 425
HpyF3I CTNAG 3 cut(s) 239, 357, 717
Hsp92II CATG 2 cut(s) 379, 635
HspAI GCGC 1 cut(s) 361
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 4 cut(s) 93, 160, 250, 743
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 5 cut(s) 64, 162, 406, 495, 673
LweI GCATC 4 cut(s) 59, 65, 121, 280
MaeI CTAG 3 cut(s) 597, 702, 713
MalI GATC 4 cut(s) 95, 162, 252, 745
MboI GATC 4 cut(s) 93, 160, 250, 743
MboII GAAGA 4 cut(s) 299, 590, 672, 738
MfeI CAATTG 1 cut(s) 771
MflI RGATCY 1 cut(s) 743
MluCI AATT 4 cut(s) 329, 543, 585, 771
MlyI GAGTC 1 cut(s) 374
Mph1103I ATGCAT 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 3 cut(s) 531, 567, 735
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 68, 454
MunI CAATTG 1 cut(s) 771
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 2 cut(s) 68, 454
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 4 cut(s) 77, 299, 416, 425
NaeI GCCGGC 1 cut(s) 82
NdeII GATC 4 cut(s) 93, 160, 250, 743
NgoMIV GCCGGC 1 cut(s) 80
NheI GCTAGC 1 cut(s) 712
NlaIII CATG 2 cut(s) 379, 635
NlaIV GGNNCC 2 cut(s) 447, 614
NsiI ATGCAT 1 cut(s) 52
NspI RCATGY 1 cut(s) 379
PagI TCATGA 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 746
PctI GAATGC 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 5 cut(s) 79, 177, 421, 510, 688
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 613
Psp5II RGGWCCY 1 cut(s) 613
Psp6I CCWGG 2 cut(s) 66, 452
PspGI CCWGG 2 cut(s) 66, 452
PspN4I GGNNCC 2 cut(s) 447, 614
PspPI GGNCC 1 cut(s) 613
PspPPI RGGWCCY 1 cut(s) 613
PsuI RGATCY 1 cut(s) 743
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 1 cut(s) 261
SalI GTCGAC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 531, 567, 735
SatI GCNGC 5 cut(s) 78, 176, 420, 509, 687
Sau3AI GATC 4 cut(s) 93, 160, 250, 743
Sau96I GGNCC 1 cut(s) 613
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 68, 454
SfaNI GCATC 4 cut(s) 59, 65, 121, 280
SinI GGWCC 1 cut(s) 613
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 4 cut(s) 329, 543, 585, 771
SsiI CCGC 4 cut(s) 27, 54, 71, 166
SspI AATATT 2 cut(s) 440, 606
SspMI CTAG 3 cut(s) 597, 702, 713
StyD4I CCNGG 2 cut(s) 66, 452
TaaI ACNGT 2 cut(s) 145, 467
TaqI TCGA 1 cut(s) 121
TasI AATT 4 cut(s) 329, 543, 585, 771
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 3 cut(s) 531, 567, 735
Tru9I TTAA 3 cut(s) 531, 567, 735
TscAI CASTG 1 cut(s) 106
TseI GCWGC 5 cut(s) 77, 175, 419, 508, 686
TspDTI ATGAA 3 cut(s) 466, 620, 650
TspGWI ACGGA 3 cut(s) 51, 107, 208
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 613
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 379
XmiI GTMKAC 2 cut(s) 121, 368
XspI CTAG 3 cut(s) 597, 702, 713
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.