RLG00000022436

Syntaxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016910
Physical Location & Seq
Forward (+)
83295730 .. 83298091
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022436

Sequence Viewer

Length: 813 bp
ATGAGCTTTCAAGATGTGCAGAATGGCGGAGGAGGAAAGGGAAAGAAGGCATCCACATCTCCGTCGCAGGCGGTGGCTGCAGGCATATTCCAGATCAACACTGCCGTTGCCACTTTCCGTCGACTGGTTGATGCCATCGGAACTGTCAAGGACACTCCCGATCACCGCCAAAAGCTGCATAATACGAGGCAACGGATACTGGAGCTTGTCAAAGATACTTCAGCTAAACTCAAATCCCTAAGCGAAGCTGATCGCCACAGCAATGTCAATCCCCGTAAGCAGATTGAAGATGCCAAGCTTGCAAGAGATTTTCAAACCACATTGCAAGAATTCCAGAAAGTTCAACAGCTTGCCTCTGAGCGCGAGTCTACTTACATGCCTTCCTTGCCAGCAACAGCAACAGCAACGTCTGCTGCCTCTGCCTCTGGGGAATATTTGGTACCAACCAGGGATGAGTACCGTCAACCTTTCATTCAGGAGCAAAAGAGACAGGAAGTAGTGCTACTGGATAATGAGATTGGTTTTAATGAGGCAATAATTGAGGAAAGGGAACAGGGTATTAAAGATATAGAAGAACAAATTGGAGAAGCTAGTGAAATATTCAGGGACCTTGCTGTTCTTGTTCATGAGCAAGGTGTAGTCATTGATGACATTCATTCAAACATTGACAACTCTTCTGCTGCAACGACCCAAGCTAGAGTTCAGCTGGCTAAGGCTTCCAAAGGTGTTAAAACGAGATCTTCGTGGTGTTGGTGGGTGCTGGCAATTGTCGTAGTGGTGATTGTAGTTGTCCTCATCATCCTTATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE Syntaxin_2

Protein Analysis

271

Amino Acids

29.88

Weight (kDa)

6.01

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin_2 PF14523 22 - 161 2.5e-31 Syntaxin-like protein
SNARE PF05739 214 - 265 1.5e-10 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016910)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54440 FvH4_6g54440
malus_domestica MD09G1001200.v1.1
prunus_persica Prupe.3G315000_v2.0.a1
pyrus_communis pycom111g00100
rosa_chinensis RchiOBHm_Chr2g0176691
rosa_laevigata RLG00000022436
rosa_multiflora Rmu_ssc0000468.1_g000011
rosa_rugosa Rorug02G0597600
rosa_samantha Rh2AG675000 Rh2BG686100 Rh2CG649400 Rh2DG700300
rosa_wichuraiana Rw2G055400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 439
AccB1I GGYRCC 1 cut(s) 439
AccI GTMKAC 2 cut(s) 121, 368
AccII CGCG 1 cut(s) 363
AciI CCGC 3 cut(s) 27, 71, 166
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 2 cut(s) 441, 458
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 5 cut(s) 11, 287, 314, 344, 660
AjnI CCWGG 1 cut(s) 446
AjuI GAANNNNNNNTTGG 4 cut(s) 564, 596, 684, 716
Alw26I GTCTC 1 cut(s) 481
ApeKI GCWGC 4 cut(s) 77, 175, 413, 680
ApoI RAATTY 1 cut(s) 329
Asp718I GGTACC 1 cut(s) 439
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 607
AsuHPI GGTGA 2 cut(s) 155, 790
AvaII GGWCC 1 cut(s) 607
BanI GGYRCC 1 cut(s) 439
BarI GAAGNNNNNNTAC 2 cut(s) 486, 518
BbvI GCAGC 4 cut(s) 64, 162, 400, 667
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 448
BciVI GTATCC 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 481
BfaI CTAG 2 cut(s) 591, 696
BfmI CTRYAG 1 cut(s) 78
BfuI GTATCC 1 cut(s) 189
BglII AGATCT 1 cut(s) 737
BisI GCNGC 4 cut(s) 78, 176, 414, 681
BlsI GCNGC 4 cut(s) 79, 177, 415, 682
Bme1390I CCNGG 1 cut(s) 448
Bme18I GGWCC 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 2 cut(s) 441, 608
BmrFI CCNGG 1 cut(s) 448
BmsI GCATC 3 cut(s) 59, 121, 280
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 2 cut(s) 239, 711
BsaJI CCNNGG 1 cut(s) 447
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 3 cut(s) 129, 204, 510
Bse3DI GCAATG 2 cut(s) 268, 320
BseBI CCWGG 1 cut(s) 448
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 3 cut(s) 50, 457, 798
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 2 cut(s) 268, 320
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 3 cut(s) 129, 204, 510
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 4 cut(s) 64, 162, 400, 667
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 363
BshNI GGYRCC 1 cut(s) 439
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 481
BsmFI GGGAC 1 cut(s) 620
Bsp143I GATC 4 cut(s) 93, 160, 250, 737
BspACI CCGC 3 cut(s) 27, 71, 166
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 2 cut(s) 441, 608
BspMAI CTGCAG 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 439
BsrDI GCAATG 2 cut(s) 268, 320
BsrI ACTGG 3 cut(s) 129, 204, 510
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 4 cut(s) 93, 160, 250, 737
Bst2UI CCWGG 1 cut(s) 448
Bst4CI ACNGT 2 cut(s) 145, 461
Bst6I CTCTTC 1 cut(s) 679
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 7 cut(s) 69, 82, 300, 351, 390, 708, 762
BstDEI CTNAG 3 cut(s) 239, 357, 711
BstF5I GGATG 3 cut(s) 50, 457, 798
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 4 cut(s) 96, 163, 253, 740
BstMAI GTCTC 1 cut(s) 481
BstMBI GATC 4 cut(s) 93, 160, 250, 737
BstMWI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 410, 419
BstNI CCWGG 1 cut(s) 448
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 446
BstSFI CTRYAG 1 cut(s) 78
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 4 cut(s) 64, 162, 400, 667
BstX2I RGATCY 1 cut(s) 737
BstYI RGATCY 1 cut(s) 737
BsuI GTATCC 1 cut(s) 189
BtsCI GGATG 3 cut(s) 50, 457, 798
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 7 cut(s) 69, 82, 300, 351, 390, 708, 762
CciI TCATGA 1 cut(s) 625
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 607
Csp6I GTAC 2 cut(s) 440, 457
CviAII CATG 2 cut(s) 376, 626
CviQI GTAC 2 cut(s) 440, 457
DdeI CTNAG 3 cut(s) 239, 357, 711
DpnI GATC 4 cut(s) 95, 162, 252, 739
DpnII GATC 4 cut(s) 93, 160, 250, 737
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
EciI GGCGGA 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 446
FaeI CATG 2 cut(s) 379, 629
FaiI YATR 7 cut(s) 86, 180, 377, 569, 627, 809, 811
FaqI GGGAC 1 cut(s) 620
FatI CATG 2 cut(s) 375, 625
FblI GTMKAC 2 cut(s) 121, 368
Fnu4HI GCNGC 4 cut(s) 78, 176, 414, 681
FokI GGATG 3 cut(s) 37, 464, 785
Fsp4HI GCNGC 4 cut(s) 78, 176, 414, 681
FspBI CTAG 2 cut(s) 591, 696
GlaI GCGC 1 cut(s) 362
GluI GCNGC 4 cut(s) 78, 176, 414, 681
GsuI CTGGAG 1 cut(s) 221
HhaI GCGC 1 cut(s) 363
Hin1II CATG 2 cut(s) 379, 629
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 2 cut(s) 122, 464
HindII GTYRAC 2 cut(s) 122, 464
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 1 cut(s) 365
HphI GGTGA 2 cut(s) 155, 790
Hpy166II GTNNAC 3 cut(s) 122, 369, 464
Hpy188I TCNGA 2 cut(s) 140, 358
Hpy188III TCNNGA 6 cut(s) 11, 91, 158, 334, 476, 626
Hpy8I GTNNAC 3 cut(s) 122, 369, 464
Hpy99I CGWCG 2 cut(s) 67, 123
HpyAV CCTTC 2 cut(s) 40, 390
HpyCH4III ACNGT 2 cut(s) 145, 461
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 6 cut(s) 19, 80, 178, 302, 325, 683
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 410, 419
HpyF3I CTNAG 3 cut(s) 239, 357, 711
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 2 cut(s) 379, 629
HspAI GCGC 1 cut(s) 361
KpnI GGTACC 1 cut(s) 443
Kzo9I GATC 4 cut(s) 93, 160, 250, 737
LmnI GCTCC 2 cut(s) 202, 478
Lsp1109I GCAGC 4 cut(s) 64, 162, 400, 667
LweI GCATC 3 cut(s) 59, 121, 280
MaeI CTAG 2 cut(s) 591, 696
MaeII ACGT 1 cut(s) 407
MalI GATC 4 cut(s) 95, 162, 252, 739
MboI GATC 4 cut(s) 93, 160, 250, 737
MboII GAAGA 4 cut(s) 299, 584, 666, 732
MfeI CAATTG 1 cut(s) 765
MflI RGATCY 1 cut(s) 737
MluCI AATT 4 cut(s) 329, 537, 579, 765
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 9 cut(s) 23, 26, 180, 364, 427, 433, 523, 535, 803
MseI TTAA 3 cut(s) 525, 561, 729
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 706
MspR9I CCNGG 1 cut(s) 448
MunI CAATTG 1 cut(s) 765
MvaI CCWGG 1 cut(s) 448
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 410, 419
NdeII GATC 4 cut(s) 93, 160, 250, 737
NlaIII CATG 2 cut(s) 379, 629
NlaIV GGNNCC 2 cut(s) 441, 608
NspI RCATGY 1 cut(s) 379
PagI TCATGA 1 cut(s) 625
PcsI WCGNNNNNNNCGW 1 cut(s) 740
PkrI GCNGC 4 cut(s) 79, 177, 415, 682
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 607
Psp5II RGGWCCY 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 446
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 441, 608
PspPI GGNCC 1 cut(s) 607
PspPPI RGGWCCY 1 cut(s) 607
PstI CTGCAG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 737
PvuII CAGCTG 1 cut(s) 706
RsaI GTAC 2 cut(s) 441, 458
RsaNI GTAC 2 cut(s) 440, 457
RseI CAYNNNNRTG 1 cut(s) 261
SalI GTCGAC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 525, 561, 729
SatI GCNGC 4 cut(s) 78, 176, 414, 681
Sau3AI GATC 4 cut(s) 93, 160, 250, 737
Sau96I GGNCC 1 cut(s) 607
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 448
SfaNI GCATC 3 cut(s) 59, 121, 280
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 1 cut(s) 607
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 4 cut(s) 329, 537, 579, 765
SsiI CCGC 3 cut(s) 27, 71, 166
SspI AATATT 2 cut(s) 434, 600
SspMI CTAG 2 cut(s) 591, 696
StyD4I CCNGG 1 cut(s) 446
TaaI ACNGT 2 cut(s) 145, 461
TaiI ACGT 1 cut(s) 410
TaqI TCGA 1 cut(s) 121
TasI AATT 4 cut(s) 329, 537, 579, 765
Tru1I TTAA 3 cut(s) 525, 561, 729
Tru9I TTAA 3 cut(s) 525, 561, 729
TscAI CASTG 1 cut(s) 106
TseI GCWGC 4 cut(s) 77, 175, 413, 680
TspDTI ATGAA 3 cut(s) 460, 614, 644
TspGWI ACGGA 3 cut(s) 51, 107, 208
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 607
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 379
XmiI GTMKAC 2 cut(s) 121, 368
XspI CTAG 2 cut(s) 591, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.