Prupe.3G315000_v2.0.a1

Syntaxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016910
Physical Location & Seq
Forward (+)
27211292 .. 27214080
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G315000.1

Sequence Viewer

Length: 813 bp
ATGAGCTTTCAAGATGTGCAGAATAGCGGAGGAAGGGGAAAGAAGGCAGCAGCGTCTCCGTCGCAGGCGGTGGCTGCCGGAATATTCCAGATCAACACTGCCGTTTCCACTTTCCGTCGACTGGTCGATGCCATCGGCACTGCCAAGGACACTCCCGACCACCGCCAAAAGCTACACAACACAAGGCAACGCATACTTGAGCTTGTCAAAGATACGTCTGCCAAGCTCAAAGCCCTCAGCGAATCTGATCACCACATCAATGTCAATCCCAGTAAGCAGATAGAAGATGCCAAGCTTGCAAGGGATTTCCAAACAACATTGCAAGAATTCCAGAAAGTTCAGCAGCTCGCCTCTGAGCGCGAGTCTTCTTACATGCCTTCCTTGCCATTGGCAGCAGCAACCTCTGCGGCCTCTGCCTCTGAGGAACATTTGGAACCTACCAGCACCAGGGATCAGCACCGCCAACCTTTCCTTCAGGAGCAAAAGAGGCAGGAAGTACTTTTGCTTGACAATGAGATTTCTTTCAATGAGGCCATAATTGAGGAGAGGGAACACGGTATTAGAGAGATAGAAGAACAAATCGGACAAGCTAACGAAATTTTCAAGGACCTTGCAGTTCTCGTTCATGAGCAGGGTGTAGTCATTGATGACATTCACTCTAACATTGACAACTCTTCTGCTGCAACGACCCAAGCCAGAGTTCAACTAGCTAAGGCCTCCAAAGGAGTTAAATCCAGATCATCATGGTGTTGGTGGGTGGTGGCGGTTTGTGTGGTGGTGGTCGTAGTCGTCCTCATCGTCCTTATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE Syntaxin_2

Protein Analysis

271

Amino Acids

29.92

Weight (kDa)

6.01

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016910)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54440 FvH4_6g54440
malus_domestica MD09G1001200.v1.1
prunus_persica Prupe.3G315000_v2.0.a1
pyrus_communis pycom111g00100
rosa_chinensis RchiOBHm_Chr2g0176691
rosa_laevigata RLG00000022436
rosa_multiflora Rmu_ssc0000468.1_g000011
rosa_rugosa Rorug02G0597600
rosa_samantha Rh2AG675000 Rh2BG686100 Rh2CG649400 Rh2DG700300
rosa_wichuraiana Rw2G055400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 118
AccII CGCG 1 cut(s) 360
AciI CCGC 6 cut(s) 27, 68, 163, 407, 460, 764
AclWI GGATC 1 cut(s) 459
AcsI RAATTY 2 cut(s) 326, 597
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 1 cut(s) 498
AfiI CCNNNNNNNGG 2 cut(s) 121, 447
AgsI TTSAA 4 cut(s) 11, 526, 604, 704
AjnI CCWGG 1 cut(s) 446
AjuI GAANNNNNNNTTGG 4 cut(s) 456, 488, 684, 716
AluBI AGCT 8 cut(s) 6, 172, 202, 226, 295, 346, 590, 710
AluI AGCT 8 cut(s) 6, 172, 202, 226, 295, 346, 590, 710
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 1 cut(s) 459
AoxI GGCC 3 cut(s) 408, 531, 714
ApeKI GCWGC 7 cut(s) 47, 50, 74, 343, 392, 395, 680
ApoI RAATTY 2 cut(s) 326, 597
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 1 cut(s) 607
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 1 cut(s) 607
BbsI GAAGAC 1 cut(s) 357
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 7 cut(s) 59, 61, 62, 355, 404, 407, 667
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 448
BclI TGATCA 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 1 cut(s) 707
BisI GCNGC 8 cut(s) 48, 51, 75, 344, 393, 396, 408, 681
BlsI GCNGC 8 cut(s) 49, 52, 76, 345, 394, 397, 409, 682
BmcAI AGTACT 1 cut(s) 498
Bme1390I CCNGG 1 cut(s) 448
Bme18I GGWCC 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 448
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 118, 277
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 357
Bpu10I CCTNAGC 2 cut(s) 236, 711
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 144, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 447
Bse1I ACTGG 2 cut(s) 126, 270
Bse3DI GCAATG 1 cut(s) 317
BseBI CCWGG 1 cut(s) 448
BseDI CCNNGG 2 cut(s) 144, 447
BseLI CCNNNNNNNGG 2 cut(s) 121, 447
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 3 cut(s) 250, 345, 411
BseNI ACTGG 2 cut(s) 126, 270
BseRI GAGGAG 1 cut(s) 557
BseXI GCAGC 7 cut(s) 59, 61, 62, 355, 404, 407, 667
BsgI GTGCAG 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 3 cut(s) 410, 533, 716
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 121, 447
BsmAI GTCTC 1 cut(s) 60
BsmBI CGTCTC 1 cut(s) 60
BsnI GGCC 3 cut(s) 410, 533, 716
Bsp143I GATC 4 cut(s) 90, 247, 451, 737
BspACI CCGC 6 cut(s) 27, 68, 163, 407, 460, 764
BspANI GGCC 3 cut(s) 410, 533, 716
BspCNI CTCAG 3 cut(s) 249, 346, 412
BspFNI CGCG 1 cut(s) 360
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 435
BspPI GGATC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 317
BsrI ACTGG 2 cut(s) 126, 270
BssECI CCNNGG 2 cut(s) 144, 447
BssMI GATC 4 cut(s) 90, 247, 451, 737
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 448
Bst4CI ACNGT 1 cut(s) 557
Bst6I CTCTTC 1 cut(s) 679
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 3 cut(s) 66, 297, 348
BstDEI CTNAG 4 cut(s) 236, 354, 420, 711
BstFNI CGCG 1 cut(s) 360
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 4 cut(s) 93, 250, 454, 740
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 4 cut(s) 90, 247, 451, 737
BstMWI GCNNNNNNNGC 6 cut(s) 74, 296, 382, 404, 413, 487
BstNI CCWGG 1 cut(s) 448
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 446
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 7 cut(s) 59, 61, 62, 355, 404, 407, 667
BstV2I GAAGAC 1 cut(s) 357
BsuRI GGCC 3 cut(s) 410, 533, 716
BtsI GCAGTG 2 cut(s) 96, 138
BtsIMutI CAGTG 2 cut(s) 96, 138
Cac8I GCNNGC 3 cut(s) 66, 297, 348
CciI TCATGA 1 cut(s) 625
CfoI GCGC 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 607
CseI GACGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 497
CviAII CATG 3 cut(s) 373, 626, 744
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 4 cut(s) 236, 354, 420, 711
DpnI GATC 4 cut(s) 92, 249, 453, 739
DpnII GATC 4 cut(s) 90, 247, 451, 737
Eam1104I CTCTTC 1 cut(s) 679
EarI CTCTTC 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 144
Eco147I AGGCCT 1 cut(s) 716
Eco47I GGWCC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 458
EcoO109I RGGNCCY 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 446
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 3 cut(s) 376, 629, 747
FaiI YATR 7 cut(s) 194, 374, 536, 627, 745, 809, 811
FatI CATG 3 cut(s) 372, 625, 743
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 1 cut(s) 118
Fnu4HI GCNGC 8 cut(s) 48, 51, 75, 344, 393, 396, 408, 681
Fsp4HI GCNGC 8 cut(s) 48, 51, 75, 344, 393, 396, 408, 681
FspBI CTAG 1 cut(s) 707
GlaI GCGC 1 cut(s) 359
GluI GCNGC 8 cut(s) 48, 51, 75, 344, 393, 396, 408, 681
HaeIII GGCC 3 cut(s) 410, 533, 716
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 42
HhaI GCGC 1 cut(s) 360
Hin1II CATG 3 cut(s) 376, 629, 747
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 2 cut(s) 242, 362
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 4 cut(s) 247, 355, 421, 584
Hpy188III TCNNGA 7 cut(s) 11, 88, 155, 331, 476, 626, 735
Hpy8I GTNNAC 1 cut(s) 119
Hpy99I CGWCG 2 cut(s) 64, 120
HpyAV CCTTC 4 cut(s) 27, 37, 387, 482
HpyCH4III ACNGT 1 cut(s) 557
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 5 cut(s) 19, 299, 322, 614, 683
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 296, 382, 404, 413, 487
HpyF3I CTNAG 4 cut(s) 236, 354, 420, 711
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 3 cut(s) 376, 629, 747
HspAI GCGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 4 cut(s) 90, 247, 451, 737
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 7 cut(s) 59, 61, 62, 355, 404, 407, 667
LweI GCATC 2 cut(s) 118, 277
MaeI CTAG 1 cut(s) 707
MaeII ACGT 1 cut(s) 215
MalI GATC 4 cut(s) 92, 249, 453, 739
MboI GATC 4 cut(s) 90, 247, 451, 737
MboII GAAGA 4 cut(s) 296, 357, 584, 666
MluCI AATT 3 cut(s) 326, 537, 597
MlyI GAGTC 1 cut(s) 371
MseI TTAA 1 cut(s) 729
MslI CAYNNNNRTG 2 cut(s) 258, 745
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 448
MvaI CCWGG 1 cut(s) 448
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 6 cut(s) 74, 296, 382, 404, 413, 487
NdeII GATC 4 cut(s) 90, 247, 451, 737
NlaIII CATG 3 cut(s) 376, 629, 747
NlaIV GGNNCC 1 cut(s) 435
NspI RCATGY 1 cut(s) 376
PagI TCATGA 1 cut(s) 625
PceI AGGCCT 1 cut(s) 716
PcsI WCGNNNNNNNCGW 1 cut(s) 795
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 8 cut(s) 49, 52, 76, 345, 394, 397, 409, 682
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PpuMI RGGWCCY 1 cut(s) 607
Psp5II RGGWCCY 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 446
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 1 cut(s) 607
PspPPI RGGWCCY 1 cut(s) 607
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
RseI CAYNNNNRTG 2 cut(s) 258, 745
SalI GTCGAC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 8 cut(s) 48, 51, 75, 344, 393, 396, 408, 681
Sau3AI GATC 4 cut(s) 90, 247, 451, 737
Sau96I GGNCC 1 cut(s) 607
ScaI AGTACT 1 cut(s) 498
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 448
SfaNI GCATC 2 cut(s) 118, 277
SinI GGWCC 1 cut(s) 607
SmiMI CAYNNNNRTG 2 cut(s) 258, 745
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 3 cut(s) 326, 537, 597
SseBI AGGCCT 1 cut(s) 716
SsiI CCGC 6 cut(s) 27, 68, 163, 407, 460, 764
SspI AATATT 1 cut(s) 84
SspMI CTAG 1 cut(s) 707
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 1 cut(s) 446
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 557
TaiI ACGT 1 cut(s) 218
TaqI TCGA 2 cut(s) 118, 126
TasI AATT 3 cut(s) 326, 537, 597
TatI WGTACW 1 cut(s) 496
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TscAI CASTG 2 cut(s) 103, 145
TseI GCWGC 7 cut(s) 47, 50, 74, 343, 392, 395, 680
TspDTI ATGAA 1 cut(s) 614
TspGWI ACGGA 2 cut(s) 48, 104
TspRI CASTG 2 cut(s) 103, 145
VpaK11BI GGWCC 1 cut(s) 607
XapI RAATTY 2 cut(s) 326, 597
XceI RCATGY 1 cut(s) 376
XmiI GTMKAC 1 cut(s) 118
XspI CTAG 1 cut(s) 707
ZrmI AGTACT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.