Rh2BG686100

Syntaxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016910
Physical Location & Seq
Forward (+)
89367039 .. 89369410
2372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG686100.1

Sequence Viewer

Length: 822 bp
ATGAGCTTTCAAGATGTGCAGAATGGCGGAGGAGGAGGAAAGGGAAAGAAGGCATCCGCATCTCCGTCGCAGGCGGTGGCTGCCGGCATATTCCAGATCAACACTGCCGTTGCCACTTTCCGTCGACTGGTTGATGCCATCGGAACTGTCAAGGACACTCCCGATCACCGCCAAAAGCTGCACAATACGAGGCAACGGATACTGGAGCTTGTCAAAGATACTTCTGCTAAACTCAAATCCCTAAGCGAATCTGATCGCCACAGCAATGTCAATCCCCGTAAGCAGATTGAAGATGCCAAGCTTGCAAGAGATTTTCAAACCACATTGCAAGAATTCCAGAAAGTTCAACATCTTGCCTCTGAGCGCGAGTCTACTTACATGCCTTCCTTACCAGCATCAGCATCAGCAACAGCAACCTCTGCTGCCTCTGCCTCTGGGGAATATTTGGAACCAACCAGGGATGAGTACCGTCAACCTTTCATTCAGGAGCAAAAGAGACAGGAAGTAGTGCTGCTGGATAATGAGATTGGTTTTAATGAGGCAATAATTGAGGAAAGGGAACAGGGTATTAAAGATATAGAAGAACAAATTGGAGAAGCTAGTGAAATATTCAGGGACCTTGCTGTTCTTGTTCATGAGCAAGGTGTAGTCATTGATGACATTCATTCAAACATTGACAACTCTTCTGCGGCAACGACCCAAGCTAGAGTTCAGCTAGCTAAGGCTTCCAAAGGTGTTAAAACGAGATCTTCGTGGTGTTGGTGGGTGCTGGCAATTGTCGTAGTGGTGATTGTAGTCGTCCTCATCATCCTTATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE Syntaxin_2

Protein Analysis

273

Amino Acids

30.1

Weight (kDa)

5.92

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin_2 PF14523 23 - 164 2.9e-31 Syntaxin-like protein
SNARE PF05739 217 - 268 1.5e-10 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016910)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54440 FvH4_6g54440
malus_domestica MD09G1001200.v1.1
prunus_persica Prupe.3G315000_v2.0.a1
pyrus_communis pycom111g00100
rosa_chinensis RchiOBHm_Chr2g0176691
rosa_laevigata RLG00000022436
rosa_multiflora Rmu_ssc0000468.1_g000011
rosa_rugosa Rorug02G0597600
rosa_samantha Rh2AG675000 Rh2BG686100 Rh2CG649400 Rh2DG700300
rosa_wichuraiana Rw2G055400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 124, 371
AccII CGCG 1 cut(s) 366
AciI CCGC 5 cut(s) 27, 57, 74, 169, 689
AcsI RAATTY 1 cut(s) 332
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 5 cut(s) 11, 290, 317, 347, 669
AjnI CCWGG 1 cut(s) 455
AjuI GAANNNNNNNTTGG 4 cut(s) 573, 605, 693, 725
AluBI AGCT 8 cut(s) 6, 178, 208, 301, 599, 704, 715, 719
AluI AGCT 8 cut(s) 6, 178, 208, 301, 599, 704, 715, 719
Alw26I GTCTC 1 cut(s) 490
ApeKI GCWGC 4 cut(s) 80, 178, 422, 511
ApoI RAATTY 1 cut(s) 332
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 616
AsuHPI GGTGA 2 cut(s) 158, 799
AsuNHI GCTAGC 1 cut(s) 715
AvaII GGWCC 1 cut(s) 616
BbvI GCAGC 4 cut(s) 67, 165, 409, 498
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 1 cut(s) 457
BciVI GTATCC 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 490
BfaI CTAG 3 cut(s) 600, 705, 716
BfuI GTATCC 1 cut(s) 192
BglII AGATCT 1 cut(s) 746
BisI GCNGC 5 cut(s) 81, 179, 423, 512, 690
BlsI GCNGC 5 cut(s) 82, 180, 424, 513, 691
Bme1390I CCNGG 1 cut(s) 457
Bme18I GGWCC 1 cut(s) 616
BmgT120I GGNCC 1 cut(s) 616
BmiI GGNNCC 2 cut(s) 450, 617
BmrFI CCNGG 1 cut(s) 457
BmsI GCATC 6 cut(s) 62, 68, 124, 283, 404, 410
BmtI GCTAGC 1 cut(s) 719
BpmI CTGGAG 1 cut(s) 224
Bpu10I CCTNAGC 2 cut(s) 242, 720
BsaJI CCNNGG 1 cut(s) 456
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 132, 207
Bse3DI GCAATG 2 cut(s) 271, 323
BseBI CCWGG 1 cut(s) 457
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 3 cut(s) 53, 466, 807
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 2 cut(s) 271, 323
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 132, 207
BseRI GAGGAG 2 cut(s) 45, 48
BseXI GCAGC 4 cut(s) 67, 165, 409, 498
BsgI GTGCAG 2 cut(s) 38, 164
Bsh1236I CGCG 1 cut(s) 366
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 490
BsmFI GGGAC 1 cut(s) 629
Bsp143I GATC 4 cut(s) 96, 163, 253, 746
BspACI CCGC 5 cut(s) 27, 57, 74, 169, 689
BspCNI CTCAG 1 cut(s) 352
BspFNI CGCG 1 cut(s) 366
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 450, 617
BspOI GCTAGC 1 cut(s) 719
BsrDI GCAATG 2 cut(s) 271, 323
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 132, 207
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 4 cut(s) 96, 163, 253, 746
Bst2UI CCWGG 1 cut(s) 457
Bst4CI ACNGT 2 cut(s) 148, 470
Bst6I CTCTTC 1 cut(s) 688
BstAPI GCANNNNNTGC 1 cut(s) 419
BstC8I GCNNGC 5 cut(s) 72, 85, 303, 717, 771
BstDEI CTNAG 3 cut(s) 242, 360, 720
BstF5I GGATG 3 cut(s) 53, 466, 807
BstFNI CGCG 1 cut(s) 366
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 4 cut(s) 99, 166, 256, 749
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 4 cut(s) 96, 163, 253, 746
BstMWI GCNNNNNNNGC 4 cut(s) 80, 302, 419, 428
BstNI CCWGG 1 cut(s) 457
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 455
BstUI CGCG 1 cut(s) 366
BstV1I GCAGC 4 cut(s) 67, 165, 409, 498
BstX2I RGATCY 1 cut(s) 746
BstYI RGATCY 1 cut(s) 746
BsuI GTATCC 1 cut(s) 192
BtsCI GGATG 3 cut(s) 53, 466, 807
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 5 cut(s) 72, 85, 303, 717, 771
CciI TCATGA 1 cut(s) 634
CfoI GCGC 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 616
Csp6I GTAC 1 cut(s) 466
CviAII CATG 2 cut(s) 379, 635
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 3 cut(s) 242, 360, 720
DpnI GATC 4 cut(s) 98, 165, 255, 748
DpnII GATC 4 cut(s) 96, 163, 253, 746
Eam1104I CTCTTC 1 cut(s) 688
EarI CTCTTC 1 cut(s) 688
EciI GGCGGA 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 616
EcoO109I RGGNCCY 1 cut(s) 616
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 455
FaeI CATG 2 cut(s) 382, 638
FaiI YATR 6 cut(s) 89, 380, 578, 636, 818, 820
FaqI GGGAC 1 cut(s) 629
FatI CATG 2 cut(s) 378, 634
FblI GTMKAC 2 cut(s) 124, 371
Fnu4HI GCNGC 5 cut(s) 81, 179, 423, 512, 690
FokI GGATG 3 cut(s) 40, 473, 794
Fsp4HI GCNGC 5 cut(s) 81, 179, 423, 512, 690
FspBI CTAG 3 cut(s) 600, 705, 716
GlaI GCGC 1 cut(s) 365
GluI GCNGC 5 cut(s) 81, 179, 423, 512, 690
GsuI CTGGAG 1 cut(s) 224
HapII CCGG 1 cut(s) 84
HhaI GCGC 1 cut(s) 366
Hin1II CATG 2 cut(s) 382, 638
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HincII GTYRAC 2 cut(s) 125, 473
HindII GTYRAC 2 cut(s) 125, 473
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 2 cut(s) 248, 368
HpaII CCGG 1 cut(s) 84
HphI GGTGA 2 cut(s) 158, 799
Hpy166II GTNNAC 3 cut(s) 125, 372, 473
Hpy188I TCNGA 3 cut(s) 143, 253, 361
Hpy188III TCNNGA 6 cut(s) 11, 94, 161, 337, 485, 635
Hpy8I GTNNAC 3 cut(s) 125, 372, 473
Hpy99I CGWCG 2 cut(s) 70, 126
HpyAV CCTTC 2 cut(s) 43, 393
HpyCH4III ACNGT 2 cut(s) 148, 470
HpyCH4V TGCA 4 cut(s) 19, 181, 305, 328
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 302, 419, 428
HpyF3I CTNAG 3 cut(s) 242, 360, 720
Hsp92II CATG 2 cut(s) 382, 638
HspAI GCGC 1 cut(s) 364
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 4 cut(s) 96, 163, 253, 746
LmnI GCTCC 2 cut(s) 205, 487
Lsp1109I GCAGC 4 cut(s) 67, 165, 409, 498
LweI GCATC 6 cut(s) 62, 68, 124, 283, 404, 410
MaeI CTAG 3 cut(s) 600, 705, 716
MalI GATC 4 cut(s) 98, 165, 255, 748
MboI GATC 4 cut(s) 96, 163, 253, 746
MboII GAAGA 4 cut(s) 302, 593, 675, 741
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 1 cut(s) 746
MluCI AATT 4 cut(s) 332, 546, 588, 774
MlyI GAGTC 1 cut(s) 377
MroNI GCCGGC 1 cut(s) 83
MseI TTAA 3 cut(s) 534, 570, 738
MslI CAYNNNNRTG 1 cut(s) 264
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 457
MunI CAATTG 1 cut(s) 774
MvaI CCWGG 1 cut(s) 457
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 4 cut(s) 80, 302, 419, 428
NaeI GCCGGC 1 cut(s) 85
NdeII GATC 4 cut(s) 96, 163, 253, 746
NgoMIV GCCGGC 1 cut(s) 83
NheI GCTAGC 1 cut(s) 715
NlaIII CATG 2 cut(s) 382, 638
NlaIV GGNNCC 2 cut(s) 450, 617
NspI RCATGY 1 cut(s) 382
PagI TCATGA 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 749
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 5 cut(s) 82, 180, 424, 513, 691
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PpuMI RGGWCCY 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 616
Psp6I CCWGG 1 cut(s) 455
PspGI CCWGG 1 cut(s) 455
PspN4I GGNNCC 2 cut(s) 450, 617
PspPI GGNCC 1 cut(s) 616
PspPPI RGGWCCY 1 cut(s) 616
PsuI RGATCY 1 cut(s) 746
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 264
SalI GTCGAC 1 cut(s) 123
SaqAI TTAA 3 cut(s) 534, 570, 738
SatI GCNGC 5 cut(s) 81, 179, 423, 512, 690
Sau3AI GATC 4 cut(s) 96, 163, 253, 746
Sau96I GGNCC 1 cut(s) 616
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 457
SfaNI GCATC 6 cut(s) 62, 68, 124, 283, 404, 410
SinI GGWCC 1 cut(s) 616
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 4 cut(s) 332, 546, 588, 774
SsiI CCGC 5 cut(s) 27, 57, 74, 169, 689
SspI AATATT 2 cut(s) 443, 609
SspMI CTAG 3 cut(s) 600, 705, 716
StyD4I CCNGG 1 cut(s) 455
TaaI ACNGT 2 cut(s) 148, 470
TaqI TCGA 1 cut(s) 124
TasI AATT 4 cut(s) 332, 546, 588, 774
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 534, 570, 738
Tru9I TTAA 3 cut(s) 534, 570, 738
TscAI CASTG 1 cut(s) 109
TseI GCWGC 4 cut(s) 80, 178, 422, 511
TspDTI ATGAA 3 cut(s) 469, 623, 653
TspGWI ACGGA 3 cut(s) 54, 110, 211
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 616
XapI RAATTY 1 cut(s) 332
XceI RCATGY 1 cut(s) 382
XmiI GTMKAC 2 cut(s) 124, 371
XspI CTAG 3 cut(s) 600, 705, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.