RchiOBHm_Chr2g0176691

Syntaxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016910
Physical Location & Seq
Forward (+)
88389963 .. 88392950
2988 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54369

Sequence Viewer

Length: 825 bp
ATGAGCTTTCAAGATGTGCAGAATGGCGGAGGAGGAAAGGGAAAGAATGCATCCGCATCTCCGTCGCAGGCGGTGGCTGCCGGCATATTCCAGATCAACACTGCCGTTGCCACTTTCCGTCGACTGGTTGATGCCATCGGAACTGTCAAGGACACTCCCGATCACCGCCAAAAGCTGCACAATACGAGGCAACGGATACTGGGGCTTGTCAAAGACACTTCTGCTAAACTCAAATCCCTAAGCGAATCTGATCGCCACAGCAATGTAAATCCCCGTAAGCAGATTGAAGATGCCAAGCTTGCAAGAGATTTTCAAACCACATTGCAAGAATTCCAGAAAGTTCAACAGCTTGCCTCTGAGCGCGAGTCTACTTACATGCCTTCCTTACCAGCGTCAGCATCAGCAACAGCAACCTCTGCTGCCTCTGCCTCTGCCTCTGGGGAATATTTGGAACCAACCAGGGATGAGTACCGTCAACCTTTCATTCAGGAGCAAAAGAGACAGGAAGTAGTGCTGCTGGATAATGAGATTGGTTTTAATGAGGCAATAATTGAGGAAAGGGAACAGGGTATTAAAGATATAGAAGAACAAATTGGAGAAGCTAGTGAAATATTCAGGGACCTTGCTGTTCTTGTTCATGAGCAAGGTGTAGTCATTGATGACATTCATTCAAACATTGACAACTCTTCTGCTGCAACGACCCAAGCTAGAGTTCAGCTAGCTAAGGCTTCCAAAGGTGTTAAAACGAGATCTTCGTGGTGTTGGTGGGTGCTGGCAATTGTCGTAGTGGTGATTGTAGTCGTCCTCATCATCCTTATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE Syntaxin_2

Protein Analysis

274

Amino Acids

30.11

Weight (kDa)

5.81

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin_2 PF14523 22 - 162 6.4e-31 Syntaxin-like protein
SNARE PF05739 218 - 269 1.5e-10 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016910)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54440 FvH4_6g54440
malus_domestica MD09G1001200.v1.1
prunus_persica Prupe.3G315000_v2.0.a1
pyrus_communis pycom111g00100
rosa_chinensis RchiOBHm_Chr2g0176691
rosa_laevigata RLG00000022436
rosa_multiflora Rmu_ssc0000468.1_g000011
rosa_rugosa Rorug02G0597600
rosa_samantha Rh2AG675000 Rh2BG686100 Rh2CG649400 Rh2DG700300
rosa_wichuraiana Rw2G055400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 121, 368
AccII CGCG 1 cut(s) 363
AciI CCGC 4 cut(s) 27, 54, 71, 166
AcsI RAATTY 1 cut(s) 329
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 5 cut(s) 11, 287, 314, 344, 672
AjnI CCWGG 1 cut(s) 458
AjuI GAANNNNNNNTTGG 4 cut(s) 576, 608, 696, 728
AluBI AGCT 8 cut(s) 6, 175, 298, 349, 602, 707, 718, 722
AluI AGCT 8 cut(s) 6, 175, 298, 349, 602, 707, 718, 722
Alw26I GTCTC 1 cut(s) 493
ApeKI GCWGC 5 cut(s) 77, 175, 419, 514, 692
ApoI RAATTY 1 cut(s) 329
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 1 cut(s) 619
AsuHPI GGTGA 2 cut(s) 155, 802
AsuNHI GCTAGC 1 cut(s) 718
AvaII GGWCC 1 cut(s) 619
BbvI GCAGC 5 cut(s) 64, 162, 406, 501, 679
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 89
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 1 cut(s) 460
BciVI GTATCC 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 3 cut(s) 603, 708, 719
BfuI GTATCC 1 cut(s) 189
BglII AGATCT 1 cut(s) 749
BisI GCNGC 5 cut(s) 78, 176, 420, 515, 693
BlsI GCNGC 5 cut(s) 79, 177, 421, 516, 694
Bme1390I CCNGG 1 cut(s) 460
Bme18I GGWCC 1 cut(s) 619
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 2 cut(s) 453, 620
BmrFI CCNGG 1 cut(s) 460
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 5 cut(s) 59, 65, 121, 280, 407
BmtI GCTAGC 1 cut(s) 722
BmuI ACTGGG 1 cut(s) 209
Bpu10I CCTNAGC 2 cut(s) 239, 723
BsaJI CCNNGG 1 cut(s) 459
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 129, 204
Bse3DI GCAATG 2 cut(s) 268, 320
BseBI CCWGG 1 cut(s) 460
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 3 cut(s) 50, 469, 810
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 2 cut(s) 268, 320
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 129, 204
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 5 cut(s) 64, 162, 406, 501, 679
BsgI GTGCAG 2 cut(s) 38, 161
Bsh1236I CGCG 1 cut(s) 363
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 632
BsmI GAATGC 1 cut(s) 52
Bsp143I GATC 4 cut(s) 93, 160, 250, 749
BspACI CCGC 4 cut(s) 27, 54, 71, 166
BspCNI CTCAG 1 cut(s) 349
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 453, 620
BspOI GCTAGC 1 cut(s) 722
BsrDI GCAATG 2 cut(s) 268, 320
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 2 cut(s) 129, 204
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 4 cut(s) 93, 160, 250, 749
Bst2UI CCWGG 1 cut(s) 460
Bst4CI ACNGT 2 cut(s) 145, 473
Bst6I CTCTTC 1 cut(s) 691
BstAPI GCANNNNNTGC 1 cut(s) 416
BstC8I GCNNGC 6 cut(s) 69, 82, 300, 351, 720, 774
BstDEI CTNAG 3 cut(s) 239, 357, 723
BstF5I GGATG 3 cut(s) 50, 469, 810
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 4 cut(s) 96, 163, 253, 752
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 4 cut(s) 93, 160, 250, 749
BstMWI GCNNNNNNNGC 4 cut(s) 77, 299, 416, 425
BstNI CCWGG 1 cut(s) 460
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 1 cut(s) 458
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 5 cut(s) 64, 162, 406, 501, 679
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
BsuI GTATCC 1 cut(s) 189
BtsCI GGATG 3 cut(s) 50, 469, 810
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 6 cut(s) 69, 82, 300, 351, 720, 774
CciI TCATGA 1 cut(s) 637
CfoI GCGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 619
CseI GACGC 1 cut(s) 381
Csp6I GTAC 1 cut(s) 469
CviAII CATG 2 cut(s) 376, 638
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 3 cut(s) 239, 357, 723
DpnI GATC 4 cut(s) 95, 162, 252, 751
DpnII GATC 4 cut(s) 93, 160, 250, 749
Eam1104I CTCTTC 1 cut(s) 691
EarI CTCTTC 1 cut(s) 691
EciI GGCGGA 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 619
EcoO109I RGGNCCY 1 cut(s) 619
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 458
EcoT22I ATGCAT 1 cut(s) 52
FaeI CATG 2 cut(s) 379, 641
FaiI YATR 6 cut(s) 86, 377, 581, 639, 821, 823
FaqI GGGAC 1 cut(s) 632
FatI CATG 2 cut(s) 375, 637
FblI GTMKAC 2 cut(s) 121, 368
Fnu4HI GCNGC 5 cut(s) 78, 176, 420, 515, 693
FokI GGATG 3 cut(s) 37, 476, 797
Fsp4HI GCNGC 5 cut(s) 78, 176, 420, 515, 693
FspBI CTAG 3 cut(s) 603, 708, 719
GlaI GCGC 1 cut(s) 362
GluI GCNGC 5 cut(s) 78, 176, 420, 515, 693
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 381
HhaI GCGC 1 cut(s) 363
Hin1II CATG 2 cut(s) 379, 641
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 2 cut(s) 122, 476
HindII GTYRAC 2 cut(s) 122, 476
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 2 cut(s) 245, 365
HpaII CCGG 1 cut(s) 81
HphI GGTGA 2 cut(s) 155, 802
Hpy166II GTNNAC 3 cut(s) 122, 369, 476
Hpy188I TCNGA 3 cut(s) 140, 250, 358
Hpy188III TCNNGA 6 cut(s) 11, 91, 158, 334, 488, 638
Hpy8I GTNNAC 3 cut(s) 122, 369, 476
Hpy99I CGWCG 2 cut(s) 67, 123
HpyAV CCTTC 1 cut(s) 390
HpyCH4III ACNGT 2 cut(s) 145, 473
HpyCH4V TGCA 6 cut(s) 19, 50, 178, 302, 325, 695
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 299, 416, 425
HpyF3I CTNAG 3 cut(s) 239, 357, 723
Hsp92II CATG 2 cut(s) 379, 641
HspAI GCGC 1 cut(s) 361
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 4 cut(s) 93, 160, 250, 749
LmnI GCTCC 1 cut(s) 490
Lsp1109I GCAGC 5 cut(s) 64, 162, 406, 501, 679
LweI GCATC 5 cut(s) 59, 65, 121, 280, 407
MaeI CTAG 3 cut(s) 603, 708, 719
MalI GATC 4 cut(s) 95, 162, 252, 751
MboI GATC 4 cut(s) 93, 160, 250, 749
MboII GAAGA 4 cut(s) 299, 596, 678, 744
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 1 cut(s) 749
MluCI AATT 4 cut(s) 329, 549, 591, 777
MlyI GAGTC 1 cut(s) 374
Mph1103I ATGCAT 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 3 cut(s) 537, 573, 741
MslI CAYNNNNRTG 1 cut(s) 261
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 460
MunI CAATTG 1 cut(s) 777
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 1 cut(s) 460
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 4 cut(s) 77, 299, 416, 425
NaeI GCCGGC 1 cut(s) 82
NdeII GATC 4 cut(s) 93, 160, 250, 749
NgoMIV GCCGGC 1 cut(s) 80
NheI GCTAGC 1 cut(s) 718
NlaIII CATG 2 cut(s) 379, 641
NlaIV GGNNCC 2 cut(s) 453, 620
NsiI ATGCAT 1 cut(s) 52
NspI RCATGY 1 cut(s) 379
PagI TCATGA 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 752
PctI GAATGC 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 5 cut(s) 79, 177, 421, 516, 694
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 619
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 1 cut(s) 458
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 2 cut(s) 453, 620
PspPI GGNCC 1 cut(s) 619
PspPPI RGGWCCY 1 cut(s) 619
PsuI RGATCY 1 cut(s) 749
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 1 cut(s) 261
SalI GTCGAC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 537, 573, 741
SatI GCNGC 5 cut(s) 78, 176, 420, 515, 693
Sau3AI GATC 4 cut(s) 93, 160, 250, 749
Sau96I GGNCC 1 cut(s) 619
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 460
SfaNI GCATC 5 cut(s) 59, 65, 121, 280, 407
SinI GGWCC 1 cut(s) 619
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 4 cut(s) 329, 549, 591, 777
SsiI CCGC 4 cut(s) 27, 54, 71, 166
SspI AATATT 2 cut(s) 446, 612
SspMI CTAG 3 cut(s) 603, 708, 719
StyD4I CCNGG 1 cut(s) 458
TaaI ACNGT 2 cut(s) 145, 473
TaqI TCGA 1 cut(s) 121
TasI AATT 4 cut(s) 329, 549, 591, 777
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 3 cut(s) 537, 573, 741
Tru9I TTAA 3 cut(s) 537, 573, 741
TscAI CASTG 1 cut(s) 106
TseI GCWGC 5 cut(s) 77, 175, 419, 514, 692
TspDTI ATGAA 3 cut(s) 472, 626, 656
TspGWI ACGGA 3 cut(s) 51, 107, 208
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 619
XapI RAATTY 1 cut(s) 329
XceI RCATGY 1 cut(s) 379
XmiI GTMKAC 2 cut(s) 121, 368
XspI CTAG 3 cut(s) 603, 708, 719
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.