pycom111g00100

Syntaxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0016910
Physical Location & Seq
Reverse (-)
92631 .. 95323
2693 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g00100.1

Sequence Viewer

Length: 858 bp
ATGAGCTTTCAAGATGTGCAGAGTGGCGGAGGAGGAAGGGGAAGGAAGGCATCGGCGTCTCCGCCTCAGGCGGTGGCTGCGGGCATATTCCAGATCAACACTGCCGTTGGCACTTTCCGTAGAATGGTCGATGCCATCGGGACTGCCAAGGACACTTCCGATCACCGCCAGAAGCTGCACAACACGAGGCAACGCATACTTGAGCTGGTAAAAGAAACGTCTGCCAAGCTCAAATCCCTCACCCAATCTGATCGCCAATCCAATGTCAATCCGAGTAAGCAGATCGAAGATGCTAAGCTTGCAAGAGATTTCCAGACCACATTGCAAGAATTTCAGAAAGTTCAACAGCTCGCCTCTGAGCGCGAGTCTACTTACATGCCTTCCTTGCCAACTTCTGCGGCTTCCGCTTCTGCCTCCGGGGAATATCTGGAGCCTAGCAGTAGCAGCACCAGGGATCAGCACCGCCAACCTTTCCTTCAGGACCAAAAGAGGCAGGAATTACTTTTGCTTGATAATGAGGTTGCTTTCAATGAGGCCATCATTGAGGAGAGGGAACAGGGTATTCGAGACATAGAAGCACAAATCGGGGAAGCTAGTGAAATTTTCAAGGACCTTGCTGTTCTCGTTCATGAGCAGGGTGTGGTCATTGATGACATTCAATCAAACATTGACAACTCTTCCTCTGCAACGACCCAAGCTAGAGTTCAGCTAGCTAAGGCTTCCAAAGGAGTTAAATTCAGATGCTCATGGCTCCCTTCCAGGAAAGGAGACGATGAGAATATGAATGGGAAAGAAGGAAAAGGTGAGTATGGTGAAGATTACGATTCTGTTGGTGAAGATTACGATTCTGAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE Syntaxin_2

Protein Analysis

286

Amino Acids

31.48

Weight (kDa)

5.07

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Syntaxin_2 PF14523 23 - 165 1.5e-30 Syntaxin-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016910)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g54440 FvH4_6g54440
malus_domestica MD09G1001200.v1.1
prunus_persica Prupe.3G315000_v2.0.a1
pyrus_communis pycom111g00100
rosa_chinensis RchiOBHm_Chr2g0176691
rosa_laevigata RLG00000022436
rosa_multiflora Rmu_ssc0000468.1_g000011
rosa_rugosa Rorug02G0597600
rosa_samantha Rh2AG675000 Rh2BG686100 Rh2CG649400 Rh2DG700300
rosa_wichuraiana Rw2G055400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 368
AccII CGCG 1 cut(s) 363
AciI CCGC 8 cut(s) 27, 62, 71, 80, 166, 398, 405, 463
AclWI GGATC 1 cut(s) 462
AcsI RAATTY 3 cut(s) 329, 600, 734
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 5 cut(s) 11, 344, 529, 607, 659
AjnI CCWGG 2 cut(s) 449, 758
AjuI GAANNNNNNNTTGG 4 cut(s) 459, 491, 687, 719
Alw26I GTCTC 3 cut(s) 63, 561, 762
AlwI GGATC 1 cut(s) 462
AlwNI CAGNNNCTG 1 cut(s) 175
AoxI GGCC 1 cut(s) 534
ApeKI GCWGC 3 cut(s) 77, 175, 444
ApoI RAATTY 3 cut(s) 329, 600, 734
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 2 cut(s) 481, 610
AsuC2I CCSGG 1 cut(s) 418
AsuHPI GGTGA 5 cut(s) 155, 232, 815, 824, 845
AsuNHI GCTAGC 1 cut(s) 709
AvaII GGWCC 2 cut(s) 481, 610
AxyI CCTNAGG 1 cut(s) 66
BauI CACGAG 1 cut(s) 184
BbvI GCAGC 3 cut(s) 64, 162, 456
BccI CCATC 2 cut(s) 143, 545
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 451, 760
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 3 cut(s) 63, 561, 762
BfaI CTAG 4 cut(s) 435, 594, 699, 710
BisI GCNGC 4 cut(s) 78, 176, 399, 445
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 4 cut(s) 79, 177, 400, 446
Bme1390I CCNGG 3 cut(s) 418, 451, 760
Bme18I GGWCC 2 cut(s) 481, 610
BmgT120I GGNCC 2 cut(s) 481, 610
BmiI GGNNCC 2 cut(s) 432, 752
BmrFI CCNGG 3 cut(s) 418, 451, 760
BmsI GCATC 4 cut(s) 59, 121, 280, 731
BmtI GCTAGC 1 cut(s) 713
BpmI CTGGAG 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 714
Bpu1102I GCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 56
BsaJI CCNNGG 3 cut(s) 147, 417, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse21I CCTNAGG 1 cut(s) 66
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 2 cut(s) 451, 760
BseDI CCNNGG 3 cut(s) 147, 417, 450
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 2 cut(s) 80, 348
BseRI GAGGAG 2 cut(s) 45, 560
BseXI GCAGC 3 cut(s) 64, 162, 456
BsgI GTGCAG 2 cut(s) 38, 161
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 1 cut(s) 536
BsiSI CCGG 1 cut(s) 417
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 3 cut(s) 63, 561, 762
BsmBI CGTCTC 2 cut(s) 63, 762
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 1 cut(s) 536
Bsp143I GATC 5 cut(s) 93, 160, 250, 282, 454
Bsp1720I GCTNAGC 1 cut(s) 294
BspACI CCGC 8 cut(s) 27, 62, 71, 80, 166, 398, 405, 463
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 2 cut(s) 79, 349
BspFNI CGCG 1 cut(s) 363
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 2 cut(s) 432, 752
BspOI GCTAGC 1 cut(s) 713
BspPI GGATC 1 cut(s) 462
BsrDI GCAATG 1 cut(s) 320
BssECI CCNNGG 3 cut(s) 147, 417, 450
BssMI GATC 5 cut(s) 93, 160, 250, 282, 454
BssNI GRCGYC 1 cut(s) 56
BssSI CACGAG 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 184
Bst2UI CCWGG 2 cut(s) 451, 760
Bst6I CTCTTC 1 cut(s) 682
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 4 cut(s) 82, 300, 351, 711
BstDEI CTNAG 4 cut(s) 66, 294, 357, 714
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 5 cut(s) 96, 163, 253, 285, 457
BstMAI GTCTC 3 cut(s) 63, 561, 762
BstMBI GATC 5 cut(s) 93, 160, 250, 282, 454
BstMWI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 404, 444
BstNI CCWGG 2 cut(s) 451, 760
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 3 cut(s) 416, 449, 758
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 64, 162, 456
Bsu36I CCTNAGG 1 cut(s) 66
BsuRI GGCC 1 cut(s) 536
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 82, 300, 351, 711
CaiI CAGNNNCTG 1 cut(s) 175
CciI TCATGA 1 cut(s) 628
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 2 cut(s) 481, 610
CseI GACGC 1 cut(s) 45
CviAII CATG 3 cut(s) 376, 629, 747
DdeI CTNAG 4 cut(s) 66, 294, 357, 714
DpnI GATC 5 cut(s) 95, 162, 252, 284, 456
DpnII GATC 5 cut(s) 93, 160, 250, 282, 454
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
EciI GGCGGA 2 cut(s) 42, 51
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 481, 610
Eco57I CTGAAG 1 cut(s) 461
Eco81I CCTNAGG 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 610
EcoRII CCWGG 2 cut(s) 449, 758
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 2 cut(s) 63, 762
FaeI CATG 3 cut(s) 379, 632, 750
FaiI YATR 8 cut(s) 86, 197, 377, 572, 630, 748, 782, 810
FaqI GGGAC 1 cut(s) 154
FatI CATG 3 cut(s) 375, 628, 746
FauI CCCGC 1 cut(s) 73
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 4 cut(s) 78, 176, 399, 445
Fsp4HI GCNGC 4 cut(s) 78, 176, 399, 445
FspBI CTAG 4 cut(s) 435, 594, 699, 710
GlaI GCGC 1 cut(s) 362
GluI GCNGC 4 cut(s) 78, 176, 399, 445
GsuI CTGGAG 1 cut(s) 449
HaeIII GGCC 1 cut(s) 536
HapII CCGG 1 cut(s) 417
HgaI GACGC 1 cut(s) 45
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 3 cut(s) 379, 632, 750
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 3 cut(s) 365, 824, 845
HpaII CCGG 1 cut(s) 417
HphI GGTGA 5 cut(s) 155, 232, 815, 824, 845
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 7 cut(s) 160, 250, 273, 336, 358, 740, 850
Hpy188III TCNNGA 8 cut(s) 11, 91, 139, 313, 428, 479, 566, 629
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 7 cut(s) 30, 36, 40, 390, 485, 765, 788
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 5 cut(s) 19, 178, 302, 325, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 404, 444
HpyF3I CTNAG 4 cut(s) 66, 294, 357, 714
HpySE526I ACGT 1 cut(s) 218
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 3 cut(s) 379, 632, 750
HspAI GCGC 1 cut(s) 361
Kzo9I GATC 5 cut(s) 93, 160, 250, 282, 454
LmnI GCTCC 2 cut(s) 430, 756
Lsp1109I GCAGC 3 cut(s) 64, 162, 456
LweI GCATC 4 cut(s) 59, 121, 280, 731
MaeI CTAG 4 cut(s) 435, 594, 699, 710
MaeII ACGT 1 cut(s) 218
MalI GATC 5 cut(s) 95, 162, 252, 284, 456
MboI GATC 5 cut(s) 93, 160, 250, 282, 454
MboII GAAGA 4 cut(s) 299, 669, 827, 848
MluCI AATT 4 cut(s) 329, 497, 600, 734
MlyI GAGTC 1 cut(s) 374
MseI TTAA 1 cut(s) 732
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 3 cut(s) 418, 451, 760
MvaI CCWGG 2 cut(s) 451, 760
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 5 cut(s) 77, 299, 385, 404, 444
NciI CCSGG 1 cut(s) 418
NdeII GATC 5 cut(s) 93, 160, 250, 282, 454
NheI GCTAGC 1 cut(s) 709
NlaIII CATG 3 cut(s) 379, 632, 750
NlaIV GGNNCC 2 cut(s) 432, 752
NspI RCATGY 1 cut(s) 379
PagI TCATGA 1 cut(s) 628
PfeI GAWTC 2 cut(s) 824, 845
PfoI TCCNGGA 1 cut(s) 758
PkrI GCNGC 4 cut(s) 79, 177, 400, 446
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 610
Psp6I CCWGG 2 cut(s) 449, 758
PspGI CCWGG 2 cut(s) 449, 758
PspN4I GGNNCC 2 cut(s) 432, 752
PspPI GGNCC 2 cut(s) 481, 610
PspPPI RGGWCCY 1 cut(s) 610
PstNI CAGNNNCTG 1 cut(s) 175
SaqAI TTAA 1 cut(s) 732
SatI GCNGC 4 cut(s) 78, 176, 399, 445
Sau3AI GATC 5 cut(s) 93, 160, 250, 282, 454
Sau96I GGNCC 2 cut(s) 481, 610
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 3 cut(s) 418, 451, 760
SfaNI GCATC 4 cut(s) 59, 121, 280, 731
SinI GGWCC 2 cut(s) 481, 610
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 4 cut(s) 329, 497, 600, 734
SsiI CCGC 8 cut(s) 27, 62, 71, 80, 166, 398, 405, 463
SspMI CTAG 4 cut(s) 435, 594, 699, 710
StyD4I CCNGG 3 cut(s) 416, 449, 758
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 1 cut(s) 221
TaqI TCGA 3 cut(s) 129, 285, 565
TasI AATT 4 cut(s) 329, 497, 600, 734
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 2 cut(s) 824, 845
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TscAI CASTG 1 cut(s) 106
TseI GCWGC 3 cut(s) 77, 175, 444
TspDTI ATGAA 2 cut(s) 617, 797
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 481, 610
XapI RAATTY 3 cut(s) 329, 600, 734
XceI RCATGY 1 cut(s) 379
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 4 cut(s) 435, 594, 699, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.