FvH4_7g02630

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012592
Physical Location & Seq
Reverse (-)
2929655 .. 2932435
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02630.t1

Sequence Viewer

Length: 2781 bp
ATGAAGCTAAGCTTATTCCATTCCCTCCAAAACCCTTGTCGACTTTACCTCCTGCCCTTTAAATCCAGAACCCTAAACCCAACCCAATTAGCTCAATTCTCCACACACCCGCAACAACAAATCTCACACCAACCCCACAACAAGTCCATCTCCTACTCTAACCTATTGTCTCAATGCGTTGCTTCCAAATCTGTGCGTGTGGGCAAACAGGTCCATGCCCACTTGATCAGATTCGGGTTCTCCCAAGACTCGACCTTTCGGAACCATTTGATCAACCTCTATGCAAAAAGCAGGTTTTTTGGGCATGCCCGGAACCTGCTCGACCAATGTCCTGAACCAGATTTGGTTGCTTGGTCTGCTTTGATTTCTGGGTATGCCCAAAATGGGCTTAGTCGAGAAGCCCTTTCGGCTTTTCATGAGATGCATGGATTGGGGGTGAAGAGTAATGAGTTCACCTTCCCAAGTGTGCTCAAGGCTTGCTCTAGTTCTAAAGATTTGAGACTGGGAATGCAGGTTCATGGGGTGGTGTATGTTACCGGGTTTGAGTCCGACGAGTTTGTTGCTAATGCTTTGGTTGTTATGTATTCGAAATGTGGGGAGTTTGGGGATACAAGGAAGTTGTTTGATGTGATGCAGGAAAGGAATGTTGTGTCGTGGAATGCCTTGTTTTCGTGTTATGTGCAGAGTGATTTCTTATTGGAGGCAATGGATTTGTTTGAGGAAATGGTGCTGAGTGGAGTAAGGCCTGATGAGTATAGTCTGTCTAGTATAATAAATGTTTGTACCGGGTTGGGGGATGGTAGAAGAGGAAGGAAACTTCATGGATATGTAGTAAAGCTTGGGTATGATTCGGATTTGTTCTCAGCCAATGCCCTTGTCGACATGTATGCAAAAGCCATATGTCTTGAAGATGCAGTTTCAGTTTTTGAGGAAATTGCACAACCTGATGTTGTATCCTGGAATGCTGTCATTGCTGGTTGTGTTCTTCACAACTGCCATGGTCGGGCGCTCAAATTTTTCAGGCAACTGGGAGGGTCAGGTATCCGTCCGAATATGTTTACATTATCAAGTGCGCTTAAAGCTTGTGCTGGGTTGTCTTTCGAGAAATTGGGTAGGCAGTTGCACTCTTTCTTGGTAAAGATGGATACAGAATCAGATTCATACGTCAAAGTCGGACTGATAGATATGTATTGCAAGTGTGAGATCATGACTGATGCAAGGCTGCTTTTGAATATGATGCCAAAGAAAGACATGATTGCATGCAACGCTGTTATCTCTGGTCATTCACAGATGGCCGAAGACATAGAAGCTGTAACCCTCTTTCCTGAAATGCATAGGGAAGGAATAGGATTCAATGACACTACTTTATCTACAGTTCTTAAATCCATTGCGAGCATGCAGGCAGCAAAAGTTTGCGAACAAGTTCATGCTCTTTCAATCAAAACAGGTTTTCTGTCTGACAGGTATGTTATAAATAGCCTTCTTGATGCATATGGAAAGTGTGGTCAAGTAGAAAATGCAGGAAGGATTTTTGAAGAATGCAAAACTGAAGATTTGGTGGCTTTCACATCAATGATCACTGCCTATGCTCAATATGAACAAGGTGAAGAAGCTCTAAAACTCTATGTGCAAATGCTACATAGGGGGAACGAGCCTGATTCATTTGTATGTAGTTCTCTTCTGAATGCTTGTGCAAATTTGTCCGCGTATGAGCAAGGGAAGCAGATTCATGTTCACATTCTGAAGTTTGGATTCTTATCTGATGCTTTTGCCGGAAATTCCCTTGTTAATATGTATGCAAAATGTGGAAGCATAGAAGATGCAGGTCGTGCTTTCTCTGAGGTACCCCAGAGAGGAATAGTTTCATGGTCTGCAATGATTGGAGGACTTGCTCAACACGGACATGGAAAAGAGGCCATCAATATGTTCAATCATATGCTCGGAGATGGTATTTCCCCCAATCATATTACTCTAGTCAGTGTCCTCTGTGCGTGCAATCATGCAGGTTTAGTAACTGAAGCCAGAAAATATTTTGAGTCAATGAAAGAGCTGTTTGGAGTAGTGCCAAGGGAGGAACATTATGCCTGCATGATTGATATTCTTGGCAGAGCAGGAAAGATACAGGAGGCAATGGAGCTTGTCAACACGATGCCATTTCAAGCAAATGCCTCAGTTTGGGGATCACTTCTTGGTGCTGCAAGAATCCATAAAAATGTGGAGCTTGGTGAACGTGCTGCTGATATGCTCTTAGTTCTGGAGCCTGAGAAATCCGGTACTCATGTACTTCTTGCAAACATATATGCAGCAGCTGGCATGTGGGACAAGGTAGCGAAAATGAGAAGACTTATGAAAAACAACCAGGTAAAGAAGGAACCTGGGATGAGTTGGATTGAGGTCCAAGACAAGGTACATACCTTTATTGTAGGTGACAGAAGTCATTTGAGAAGCAGGGAGATATATGTAAAACTTGATGAGCTGCTTGACCGTATTCATAAAGCCGGCTATGTTCCAATGGTGGAAAACGACCTCCATGATGTGGAACAAAGCGAAAAGGAGCGGCTGCTACGGTATCACAGTGAGAAGCTTGCAGTGGCTTTCGCATTGATTGCCACTCCGCCAGGAGCTCCGATTAGGGTGAAGAAGAACTTAAGAGTGTGTGTAGATTGCCATACTGCATTCAAGTTCATCTGTAAAATCACCTCAAGGGAGATAATCGTGAGGGACGTCAATAGATTCCATCATTTCAAAGATGGCTCATGCTCTTGTGGGGATTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

927

Amino Acids

103.21

Weight (kDa)

6.95

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 113 - 161 1.6e-09 PPR repeat family
PPR PF01535 116 - 146 2.4e-07 PPR repeat
PPR_long PF17177 131 - 269 3.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 214 - 261 9.7e-11 PPR repeat family
PPR PF01535 217 - 247 1e-06 PPR repeat
PPR_2 PF13041 315 - 363 4.6e-08 PPR repeat family
PPR_2 PF13041 518 - 566 2.9e-10 PPR repeat family
PPR_2 PF13041 619 - 665 4.6e-09 PPR repeat family
PPR PF01535 621 - 651 3e-06 PPR repeat
E_motif PF20431 736 - 798 8.8e-22 E motif
Eplus_motif PF20430 803 - 830 3.9e-08 E+ motif
DYW_deaminase PF14432 834 - 926 4.8e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1472
AatII GACGTC 1 cut(s) 2727
Acc36I ACCTGC 5 cut(s) 282, 324, 502, 1814, 1994
Acc65I GGTACC 1 cut(s) 1843
AccB1I GGYRCC 1 cut(s) 1843
AccB7I CCANNNNNTGG 1 cut(s) 2536
AccBSI CCGCTC 1 cut(s) 2557
AccI GTMKAC 2 cut(s) 40, 879
AccII CGCG 1 cut(s) 1706
AciI CCGC 4 cut(s) 110, 1704, 2557, 2615
AclWI GGATC 1 cut(s) 2188
AcoI YGGCCR 1 cut(s) 1293
AcsI RAATTY 3 cut(s) 1013, 1696, 1777
AcuI CTGAAG 3 cut(s) 1569, 1763, 2037
AcyI GRCGYC 1 cut(s) 2724
AfaI GTAC 5 cut(s) 784, 1845, 2275, 2283, 2409
AfiI CCNNNNNNNGG 7 cut(s) 384, 792, 1003, 1853, 2175, 2404, 2536
AflII CTTAAG 1 cut(s) 2647
AflIII ACRYGT 1 cut(s) 882
AgsI TTSAA 9 cut(s) 908, 1231, 1354, 1437, 1535, 1930, 2159, 2680, 2746
AjnI CCWGG 4 cut(s) 956, 2358, 2374, 2617
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
Alw21I GWGCWC 2 cut(s) 471, 2626
Alw26I GTCTC 2 cut(s) 174, 493
AlwI GGATC 1 cut(s) 2188
AlwNI CAGNNNCTG 1 cut(s) 2309
AoxI GGCC 3 cut(s) 743, 1293, 1914
ApeKI GCWGC 8 cut(s) 1222, 1403, 2195, 2234, 2303, 2306, 2476, 2560
ApoI RAATTY 3 cut(s) 1013, 1696, 1777
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
Asp700I GAANNNNTTC 2 cut(s) 1422, 1861
Asp718I GGTACC 1 cut(s) 1843
AspLEI GCGC 2 cut(s) 1009, 1075
AspS9I GGNCC 2 cut(s) 211, 2395
AsuC2I CCSGG 3 cut(s) 310, 538, 787
AsuHPI GGTGA 7 cut(s) 445, 448, 1616, 2237, 2438, 2647, 2689
AsuII TTCGAA 1 cut(s) 587
AvaII GGWCC 2 cut(s) 211, 2395
BaeI ACNNNNGTAYC 2 cut(s) 2265, 2298
BanI GGYRCC 1 cut(s) 1843
BanII GRGCYC 1 cut(s) 2626
BbsI GAAGAC 2 cut(s) 1305, 2347
Bbv12I GWGCWC 2 cut(s) 471, 2626
BbvI GCAGC 8 cut(s) 1209, 1415, 2182, 2221, 2315, 2318, 2463, 2547
BccI CCATC 8 cut(s) 155, 791, 1135, 1285, 1925, 1940, 2744, 2745
BcgI CGANNNNNNTGC 4 cut(s) 542, 576, 869, 903
BciT130I CCWGG 4 cut(s) 958, 2360, 2376, 2619
BciVI GTATCC 4 cut(s) 601, 964, 1052, 1138
BclI TGATCA 3 cut(s) 225, 270, 1575
BcnI CCSGG 3 cut(s) 310, 538, 787
BcoDI GTCTC 2 cut(s) 174, 493
BfaI CTAG 3 cut(s) 483, 765, 1973
BfmI CTRYAG 1 cut(s) 1371
BfoI RGCGCY 1 cut(s) 1010
BfrI CTTAAG 1 cut(s) 2647
BfuAI ACCTGC 5 cut(s) 282, 324, 502, 1814, 1994
BfuI GTATCC 4 cut(s) 601, 964, 1052, 1138
BglI GCCNNNNNGGC 1 cut(s) 407
BisI GCNGC 9 cut(s) 1223, 1404, 2196, 2235, 2304, 2307, 2477, 2558, 2561
BlpI GCTNAGC 1 cut(s) 8
BlsI GCNGC 9 cut(s) 1224, 1405, 2197, 2236, 2305, 2308, 2478, 2559, 2562
Bme1390I CCNGG 7 cut(s) 310, 538, 787, 958, 2360, 2376, 2619
Bme18I GGWCC 2 cut(s) 211, 2395
BmgT120I GGNCC 2 cut(s) 211, 2395
BmiI GGNNCC 5 cut(s) 263, 314, 1845, 2259, 2373
BmrFI CCNGG 7 cut(s) 310, 538, 787, 958, 2360, 2376, 2619
BmrI ACTGGG 2 cut(s) 512, 1037
BmsI GCATC 9 cut(s) 411, 621, 901, 1204, 1227, 1477, 1753, 1810, 2139
BmuI ACTGGG 2 cut(s) 512, 1037
BoxI GACNNNNGTC 2 cut(s) 327, 2433
BpiI GAAGAC 2 cut(s) 1305, 2347
BpmI CTGGAG 1 cut(s) 2276
Bpu1102I GCTNAGC 1 cut(s) 8
Bpu14I TTCGAA 1 cut(s) 587
BpuEI CTTGAG 2 cut(s) 455, 2686
BpuMI CCSGG 3 cut(s) 310, 538, 787
BsaBI GATNNNNATC 1 cut(s) 1756
BsaHI GRCGYC 1 cut(s) 2724
BsaJI CCNNGG 3 cut(s) 997, 2066, 2375
BsaWI WCCGGW 1 cut(s) 2270
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 7 cut(s) 384, 792, 1003, 1853, 2175, 2404, 2536
Bse118I RCCGGY 1 cut(s) 2498
Bse1I ACTGG 3 cut(s) 507, 1032, 2780
Bse3DI GCAATG 5 cut(s) 711, 969, 1386, 1881, 2136
Bse8I GATNNNNATC 1 cut(s) 1756
BseBI CCWGG 4 cut(s) 958, 2360, 2376, 2619
BseDI CCNNGG 3 cut(s) 997, 2066, 2375
BseGI GGATG 2 cut(s) 802, 2385
BseJI GATNNNNATC 1 cut(s) 1756
BseLI CCNNNNNNNGG 7 cut(s) 384, 792, 1003, 1853, 2175, 2404, 2536
BseMI GCAATG 5 cut(s) 711, 969, 1386, 1881, 2136
BseMII CTCAG 5 cut(s) 722, 876, 1830, 2184, 2253
BseNI ACTGG 3 cut(s) 507, 1032, 2780
BseXI GCAGC 8 cut(s) 1209, 1415, 2182, 2221, 2315, 2318, 2463, 2547
BseYI CCCAGC 1 cut(s) 1088
BsgI GTGCAG 1 cut(s) 701
Bsh1236I CGCG 1 cut(s) 1706
BshFI GGCC 3 cut(s) 745, 1295, 1916
BshNI GGYRCC 1 cut(s) 1843
BsiHKAI GWGCWC 2 cut(s) 471, 2626
BsiSI CCGG 6 cut(s) 310, 537, 786, 1773, 2271, 2499
BslFI GGGAC 2 cut(s) 2333, 2735
BslI CCNNNNNNNGG 7 cut(s) 384, 792, 1003, 1853, 2175, 2404, 2536
BsmAI GTCTC 2 cut(s) 174, 493
BsmFI GGGAC 2 cut(s) 2333, 2735
BsmI GAATGC 6 cut(s) 513, 664, 967, 1544, 1690, 2675
BsnI GGCC 3 cut(s) 745, 1295, 1916
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 2 cut(s) 471, 2626
Bsp143I GATC 5 cut(s) 225, 270, 1203, 1575, 2180
Bsp1720I GCTNAGC 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 997
BspACI CCGC 4 cut(s) 110, 1704, 2557, 2615
BspANI GGCC 3 cut(s) 745, 1295, 1916
BspCNI CTCAG 5 cut(s) 723, 875, 1831, 2183, 2254
BspFNI CGCG 1 cut(s) 1706
BspHI TCATGA 2 cut(s) 415, 1206
BspLI GGNNCC 5 cut(s) 263, 314, 1845, 2259, 2373
BspMI ACCTGC 5 cut(s) 282, 324, 502, 1814, 1994
BspPI GGATC 1 cut(s) 2188
BspT104I TTCGAA 1 cut(s) 587
BspT107I GGYRCC 1 cut(s) 1843
BspTI CTTAAG 1 cut(s) 2647
BsrBI CCGCTC 1 cut(s) 2557
BsrDI GCAATG 5 cut(s) 711, 969, 1386, 1881, 2136
BsrFI RCCGGY 1 cut(s) 2498
BsrI ACTGG 3 cut(s) 507, 1032, 2780
BssAI RCCGGY 1 cut(s) 2498
BssECI CCNNGG 3 cut(s) 997, 2066, 2375
BssMI GATC 5 cut(s) 225, 270, 1203, 1575, 2180
BssNI GRCGYC 1 cut(s) 2724
BssT1I CCWWGG 2 cut(s) 997, 2066
Bst2UI CCWGG 4 cut(s) 958, 2360, 2376, 2619
Bst4CI ACNGT 4 cut(s) 1375, 2486, 2568, 2576
Bst6I CTCTTC 3 cut(s) 434, 799, 1683
BstACI GRCGYC 1 cut(s) 2724
BstAFI CTTAAG 1 cut(s) 2647
BstAPI GCANNNNNTGC 2 cut(s) 1829, 2606
BstBI TTCGAA 1 cut(s) 587
BstDEI CTNAG 8 cut(s) 8, 389, 731, 862, 1839, 2170, 2248, 2262
BstDSI CCRYGG 1 cut(s) 997
BstF5I GGATG 2 cut(s) 802, 2385
BstFNI CGCG 1 cut(s) 1706
BstH2I RGCGCY 1 cut(s) 1010
BstHHI GCGC 2 cut(s) 1009, 1075
BstKTI GATC 5 cut(s) 228, 273, 1206, 1578, 2183
BstMAI GTCTC 2 cut(s) 174, 493
BstMBI GATC 5 cut(s) 225, 270, 1203, 1575, 2180
BstMWI GCNNNNNNNGC 8 cut(s) 356, 407, 971, 1079, 1265, 1720, 1829, 2606
BstNI CCWGG 4 cut(s) 958, 2360, 2376, 2619
BstNSI RCATGY 5 cut(s) 308, 886, 1263, 1399, 2317
BstPAI GACNNNNGTC 2 cut(s) 327, 2433
BstSCI CCNGG 7 cut(s) 308, 536, 785, 956, 2358, 2374, 2617
BstSFI CTRYAG 1 cut(s) 1371
BstUI CGCG 1 cut(s) 1706
BstV1I GCAGC 8 cut(s) 1209, 1415, 2182, 2221, 2315, 2318, 2463, 2547
BstV2I GAAGAC 2 cut(s) 1305, 2347
BsuI GTATCC 4 cut(s) 601, 964, 1052, 1138
BsuRI GGCC 3 cut(s) 745, 1295, 1916
BtgI CCRYGG 1 cut(s) 997
BtsCI GGATG 2 cut(s) 802, 2385
BtsI GCAGTG 2 cut(s) 1578, 2595
BtsIMutI CAGTG 4 cut(s) 1578, 1984, 2581, 2595
BveI ACCTGC 5 cut(s) 282, 324, 502, 1814, 1994
CaiI CAGNNNCTG 1 cut(s) 2309
CciI TCATGA 2 cut(s) 415, 1206
CfoI GCGC 2 cut(s) 1009, 1075
Cfr10I RCCGGY 1 cut(s) 2498
Cfr13I GGNCC 2 cut(s) 211, 2395
CsiI ACCWGGT 1 cut(s) 2358
Csp6I GTAC 5 cut(s) 783, 1844, 2274, 2282, 2408
CviQI GTAC 5 cut(s) 783, 1844, 2274, 2282, 2408
DdeI CTNAG 8 cut(s) 8, 389, 731, 862, 1839, 2170, 2248, 2262
DpnI GATC 5 cut(s) 227, 272, 1205, 1577, 2182
DpnII GATC 5 cut(s) 225, 270, 1203, 1575, 2180
DraI TTTAAA 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 1293
Eam1104I CTCTTC 3 cut(s) 434, 799, 1683
EarI CTCTTC 3 cut(s) 434, 799, 1683
EciI GGCGGA 1 cut(s) 2604
Ecl136II GAGCTC 1 cut(s) 2624
Eco130I CCWWGG 2 cut(s) 997, 2066
Eco147I AGGCCT 1 cut(s) 745
Eco24I GRGCYC 1 cut(s) 2626
Eco47I GGWCC 2 cut(s) 211, 2395
Eco53kI GAGCTC 1 cut(s) 2624
Eco57I CTGAAG 3 cut(s) 1569, 1763, 2037
EcoICRI GAGCTC 1 cut(s) 2624
EcoRII CCWGG 4 cut(s) 956, 2358, 2374, 2617
EcoT14I CCWWGG 2 cut(s) 997, 2066
EcoT22I ATGCAT 3 cut(s) 426, 1335, 1492
EcoT38I GRGCYC 1 cut(s) 2626
ErhI CCWWGG 2 cut(s) 997, 2066
FalI AAGNNNNNCTT 3 cut(s) 28, 2630, 2662
FaqI GGGAC 2 cut(s) 2333, 2735
FauI CCCGC 1 cut(s) 117
FauNDI CATATG 3 cut(s) 899, 1492, 1935
FbaI TGATCA 3 cut(s) 225, 270, 1575
FblI GTMKAC 2 cut(s) 40, 879
Fnu4HI GCNGC 9 cut(s) 1223, 1404, 2196, 2235, 2304, 2307, 2477, 2558, 2561
FokI GGATG 2 cut(s) 809, 2392
FriOI GRGCYC 1 cut(s) 2626
Fsp4HI GCNGC 9 cut(s) 1223, 1404, 2196, 2235, 2304, 2307, 2477, 2558, 2561
FspBI CTAG 3 cut(s) 483, 765, 1973
GlaI GCGC 2 cut(s) 1008, 1074
GluI GCNGC 9 cut(s) 1223, 1404, 2196, 2235, 2304, 2307, 2477, 2558, 2561
GsaI CCCAGC 1 cut(s) 1092
GsuI CTGGAG 1 cut(s) 2276
HaeII RGCGCY 1 cut(s) 1010
HaeIII GGCC 3 cut(s) 745, 1295, 1916
HapII CCGG 6 cut(s) 310, 537, 786, 1773, 2271, 2499
HhaI GCGC 2 cut(s) 1009, 1075
Hin1I GRCGYC 1 cut(s) 2724
Hin6I GCGC 2 cut(s) 1007, 1073
HinP1I GCGC 2 cut(s) 1007, 1073
HincII GTYRAC 3 cut(s) 41, 880, 2143
HindII GTYRAC 3 cut(s) 41, 880, 2143
HindIII AAGCTT 4 cut(s) 10, 836, 1080, 2582
HpaII CCGG 6 cut(s) 310, 537, 786, 1773, 2271, 2499
HphI GGTGA 7 cut(s) 445, 448, 1616, 2237, 2438, 2647, 2689
Hpy166II GTNNAC 7 cut(s) 41, 453, 880, 1059, 1735, 2143, 2228
Hpy8I GTNNAC 7 cut(s) 41, 453, 880, 1059, 1735, 2143, 2228
Hpy99I CGWCG 1 cut(s) 554
HpyAV CCTTC 6 cut(s) 466, 804, 1334, 1490, 1518, 2362
HpyCH4III ACNGT 4 cut(s) 1375, 2486, 2568, 2576
HpyCH4IV ACGT 3 cut(s) 1164, 2230, 2724
HpyF10VI GCNNNNNNNGC 8 cut(s) 356, 407, 971, 1079, 1265, 1720, 1829, 2606
HpyF3I CTNAG 8 cut(s) 8, 389, 731, 862, 1839, 2170, 2248, 2262
HpySE526I ACGT 3 cut(s) 1164, 2230, 2724
Hsp92I GRCGYC 1 cut(s) 2724
HspAI GCGC 2 cut(s) 1007, 1073
KpnI GGTACC 1 cut(s) 1847
KroI GCCGGC 1 cut(s) 2498
KroNI GCCGGC 1 cut(s) 2500
Ksp22I TGATCA 3 cut(s) 225, 270, 1575
Kzo9I GATC 5 cut(s) 225, 270, 1203, 1575, 2180
LmnI GCTCC 6 cut(s) 2134, 2218, 2257, 2554, 2621, 2629
Lsp1109I GCAGC 8 cut(s) 1209, 1415, 2182, 2221, 2315, 2318, 2463, 2547
LweI GCATC 9 cut(s) 411, 621, 901, 1204, 1227, 1477, 1753, 1810, 2139
MabI ACCWGGT 1 cut(s) 2358
MaeI CTAG 3 cut(s) 483, 765, 1973
MaeII ACGT 3 cut(s) 1164, 2230, 2724
MaeIII GTNAC 4 cut(s) 532, 1312, 2011, 2426
MalI GATC 5 cut(s) 227, 272, 1205, 1577, 2182
MbiI CCGCTC 1 cut(s) 2557
MboI GATC 5 cut(s) 225, 270, 1203, 1575, 2180
MhlI GDGCHC 2 cut(s) 471, 2626
MluCI AATT 7 cut(s) 86, 95, 933, 1013, 1106, 1696, 1777
MlyI GAGTC 3 cut(s) 242, 554, 2045
MmeI TCCRAC 3 cut(s) 573, 1153, 2366
Mph1103I ATGCAT 3 cut(s) 426, 1335, 1492
MroNI GCCGGC 1 cut(s) 2498
MroXI GAANNNNTTC 2 cut(s) 1422, 1861
MseI TTAA 5 cut(s) 60, 1077, 1380, 1788, 2648
MslI CAYNNNNRTG 6 cut(s) 825, 1571, 1666, 1902, 1922, 2211
MspA1I CMGCKG 1 cut(s) 2309
MspCI CTTAAG 1 cut(s) 2647
MspI CCGG 6 cut(s) 310, 537, 786, 1773, 2271, 2499
MspR9I CCNGG 7 cut(s) 310, 538, 787, 958, 2360, 2376, 2619
Mva1269I GAATGC 6 cut(s) 513, 664, 967, 1544, 1690, 2675
MvaI CCWGG 4 cut(s) 958, 2360, 2376, 2619
MvnI CGCG 1 cut(s) 1706
MwoI GCNNNNNNNGC 8 cut(s) 356, 407, 971, 1079, 1265, 1720, 1829, 2606
NaeI GCCGGC 1 cut(s) 2500
NciI CCSGG 3 cut(s) 310, 538, 787
NcoI CCATGG 1 cut(s) 997
NdeI CATATG 3 cut(s) 899, 1492, 1935
NdeII GATC 5 cut(s) 225, 270, 1203, 1575, 2180
NgoMIV GCCGGC 1 cut(s) 2498
NlaIV GGNNCC 5 cut(s) 263, 314, 1845, 2259, 2373
NmuCI GTSAC 1 cut(s) 2426
NsiI ATGCAT 3 cut(s) 426, 1335, 1492
NspI RCATGY 5 cut(s) 308, 886, 1263, 1399, 2317
NspV TTCGAA 1 cut(s) 587
PaeI GCATGC 3 cut(s) 308, 1263, 1399
PagI TCATGA 2 cut(s) 415, 1206
PceI AGGCCT 1 cut(s) 745
PciI ACATGT 1 cut(s) 882
PcsI WCGNNNNNNNCGW 1 cut(s) 2721
PctI GAATGC 6 cut(s) 513, 664, 967, 1544, 1690, 2675
PdiI GCCGGC 1 cut(s) 2500
PdmI GAANNNNTTC 2 cut(s) 1422, 1861
PflMI CCANNNNNTGG 1 cut(s) 2536
PfoI TCCNGGA 1 cut(s) 956
PkrI GCNGC 9 cut(s) 1224, 1405, 2197, 2236, 2305, 2308, 2478, 2559, 2562
PleI GAGTC 3 cut(s) 242, 553, 2044
PpsI GAGTC 3 cut(s) 242, 553, 2044
PscI ACATGT 1 cut(s) 882
PshAI GACNNNNGTC 2 cut(s) 327, 2433
PsiI TTATAA 1 cut(s) 1472
Psp124BI GAGCTC 1 cut(s) 2626
Psp6I CCWGG 4 cut(s) 956, 2358, 2374, 2617
PspFI CCCAGC 1 cut(s) 1088
PspGI CCWGG 4 cut(s) 956, 2358, 2374, 2617
PspN4I GGNNCC 5 cut(s) 263, 314, 1845, 2259, 2373
PspPI GGNCC 2 cut(s) 211, 2395
PstNI CAGNNNCTG 1 cut(s) 2309
PvuII CAGCTG 1 cut(s) 2309
RsaI GTAC 5 cut(s) 784, 1845, 2275, 2283, 2409
RsaNI GTAC 5 cut(s) 783, 1844, 2274, 2282, 2408
RseI CAYNNNNRTG 6 cut(s) 825, 1571, 1666, 1902, 1922, 2211
SacI GAGCTC 1 cut(s) 2626
SalI GTCGAC 2 cut(s) 39, 878
SaqAI TTAA 5 cut(s) 60, 1077, 1380, 1788, 2648
SatI GCNGC 9 cut(s) 1223, 1404, 2196, 2235, 2304, 2307, 2477, 2558, 2561
Sau3AI GATC 5 cut(s) 225, 270, 1203, 1575, 2180
Sau96I GGNCC 2 cut(s) 211, 2395
SchI GAGTC 3 cut(s) 242, 554, 2045
ScrFI CCNGG 7 cut(s) 310, 538, 787, 958, 2360, 2376, 2619
SduI GDGCHC 2 cut(s) 471, 2626
SexAI ACCWGGT 1 cut(s) 2358
SfaNI GCATC 9 cut(s) 411, 621, 901, 1204, 1227, 1477, 1753, 1810, 2139
SfcI CTRYAG 1 cut(s) 1371
SfuI TTCGAA 1 cut(s) 587
SinI GGWCC 2 cut(s) 211, 2395
SmiMI CAYNNNNRTG 6 cut(s) 825, 1571, 1666, 1902, 1922, 2211
SmlI CTYRAG 3 cut(s) 470, 2647, 2701
SmoI CTYRAG 3 cut(s) 470, 2647, 2701
SphI GCATGC 3 cut(s) 308, 1263, 1399
Sse9I AATT 7 cut(s) 86, 95, 933, 1013, 1106, 1696, 1777
SseBI AGGCCT 1 cut(s) 745
SsiI CCGC 4 cut(s) 110, 1704, 2557, 2615
SspI AATATT 1 cut(s) 2030
SspMI CTAG 3 cut(s) 483, 765, 1973
SstI GAGCTC 1 cut(s) 2626
StuI AGGCCT 1 cut(s) 745
StyD4I CCNGG 7 cut(s) 308, 536, 785, 956, 2358, 2374, 2617
StyI CCWWGG 2 cut(s) 997, 2066
TaaI ACNGT 4 cut(s) 1375, 2486, 2568, 2576
TaiI ACGT 3 cut(s) 1167, 2233, 2727
TaqI TCGA 7 cut(s) 40, 251, 321, 394, 587, 879, 1101
TasI AATT 7 cut(s) 86, 95, 933, 1013, 1106, 1696, 1777
TatI WGTACW 1 cut(s) 2281
TauI GCSGC 1 cut(s) 2560
Tru1I TTAA 5 cut(s) 60, 1077, 1380, 1788, 2648
Tru9I TTAA 5 cut(s) 60, 1077, 1380, 1788, 2648
TscAI CASTG 4 cut(s) 1585, 1984, 2581, 2595
TseFI GTSAC 1 cut(s) 2426
TseI GCWGC 8 cut(s) 1222, 1403, 2195, 2234, 2303, 2306, 2476, 2560
Tsp45I GTSAC 1 cut(s) 2426
TspGWI ACGGA 2 cut(s) 1034, 1914
TspRI CASTG 4 cut(s) 1585, 1984, 2581, 2595
Van91I CCANNNNNTGG 1 cut(s) 2536
Vha464I CTTAAG 1 cut(s) 2647
VpaK11BI GGWCC 2 cut(s) 211, 2395
XapI RAATTY 3 cut(s) 1013, 1696, 1777
XceI RCATGY 5 cut(s) 308, 886, 1263, 1399, 2317
XmiI GTMKAC 2 cut(s) 40, 879
XmnI GAANNNNTTC 2 cut(s) 1422, 1861
XspI CTAG 3 cut(s) 483, 765, 1973
ZraI GACGTC 1 cut(s) 2725
Zsp2I ATGCAT 3 cut(s) 426, 1335, 1492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.