Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039526.1

Orthogroup ID

OG0012592

Physical Location & Seq

Genomic Coordinates Forward (+)

1582 .. 2724

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039526.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atggaagtccatgcccacttaatcagattcgggttgtcccaagactcgagctttcggaaccatttgatcaatttctacgcaaaaagcaggttttttgggcatgcccggaagctgatcgacgaaagtcctgaaccagatttggttgcttggtctgctttgatttctgggtatgcccagaatgggcttggtagagaagcaatttcagcttttcatgagatgcatggattgggggtcaagtgtaatgagtttacattcccaagtgtgctcaaggcttgctcttattctaaagatttgaggctgggaaagcaggttcatggggtggtgttggttaccgggtttgagtccgatgagtttgttgctaatactctggttgttatgtattcgaaatgtggggagtttggggattccaggaggctgtttgatgcaattctggagaggaatgttgtttcgtggaatgcgttgttttcgtgttatgtgcagagtgatttctttggggaggcaatggatttgtttgaggaaatggttgtgagtggaataaggcctaatgagtatagtctgtctagtataataaatgcttgtactggattgggggatggtagaagaggaaggaaaattcatggatatatagttaagcttgggtatgattctgattctttctcagccaatgcgcttgttgacatgtatgcaaaagccaaaggtcttgaagatgcaatttcagtttttgagaaaattgcacaaccagatattgtatcctggaatgctgttattgctggttgtgttcttcacaactgccatggtcgggcgctcaaattgttcaggcaactgagagggtcaggaatccgtcctaatatgtttacattatcaagtgcgcttaaagcttgtgctgggatgggtttcgagaaattgggtaggcagttgcactctttcttgataaggatggatacagaatcagattcatatgtcaaagttggactgatagatatgtattgcaagtgtgagatgatgactgatgcaaggatgctttttaatatgatgccaaagaaagacatgattgcatggaatgctgttatctctggtcattcacagatggctgaagacagagaagctgtaaccctctttcctgaaatgcatagggaaggaata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

381

Amino Acids

42.58

Weight (kDa)

6.5

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012592)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g08720 FvH4_7g02630
malus_domestica	MD10G1290200.v1.1
prunus_persica	Prupe.4G051600_v2.0.a1
pyrus_communis	pycom05g28730 pycom10g24240
rosa_chinensis	RchiOBHm_Chr5g0009041
rosa_laevigata	RLG00000031625
rosa_multiflora	Rmu_co8303565.1_g000001 Rmu_sc0002034.1_g000012 Rmu_sc0039526.1_g000001
rosa_roxburghii	Rroxscaffold_1G00066980
rosa_rugosa	Rorug04G0440900
rosa_samantha	Rh5AG069900 Rh5BG066600 Rh5BG066800 Rh5CG078000 Rh5DG066100
rosa_wichuraiana	Rw5G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	78, 298
AcsI	RAATTY	1 cut(s)	612
AcuI	CTGAAG	1 cut(s)	1113
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	2 cut(s)	180, 799
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	1 cut(s)	704
AjnI	CCWGG	2 cut(s)	407, 752
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	6 cut(s)	51, 112, 206, 634, 878, 1106
AluI	AGCT	6 cut(s)	51, 112, 206, 634, 878, 1106
Alw21I	GWGCWC	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	1 cut(s)	539
ApoI	RAATTY	1 cut(s)	612
AspLEI	GCGC	3 cut(s)	670, 805, 871
AsuC2I	CCSGG	2 cut(s)	106, 334
AsuII	TTCGAA	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	1101
Bbv12I	GWGCWC	1 cut(s)	267
BccI	CCATC	4 cut(s)	587, 883, 931, 1081
BciT130I	CCWGG	2 cut(s)	409, 754
BciVI	GTATCC	2 cut(s)	760, 934
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	2 cut(s)	106, 334
BfaI	CTAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	806
BfuAI	ACCTGC	2 cut(s)	78, 298
BfuI	GTATCC	2 cut(s)	760, 934
Bme1390I	CCNGG	4 cut(s)	106, 334, 409, 754
BmeT110I	CYCGRG	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	4 cut(s)	106, 334, 409, 754
BmsI	GCATC	6 cut(s)	207, 412, 697, 1000, 1008, 1023
BoxI	GACNNNNGTC	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	1101
BpmI	CTGGAG	1 cut(s)	452
Bpu14I	TTCGAA	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	2 cut(s)	106, 334
BsaJI	CCNNGG	1 cut(s)	793
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 799
Bse1I	ACTGG	1 cut(s)	586
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	2 cut(s)	409, 754
BseDI	CCNNGG	1 cut(s)	793
BseGI	GGATG	4 cut(s)	598, 894, 942, 1023
BseLI	CCNNNNNNNGG	2 cut(s)	180, 799
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	672, 815
BseNI	ACTGG	1 cut(s)	586
BseYI	CCCAGC	2 cut(s)	298, 884
BsgI	GTGCAG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	541
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	106, 333
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	180, 799
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	3 cut(s)	460, 763, 1066
BsnI	GGCC	1 cut(s)	541
BsoBI	CYCGRG	1 cut(s)	46
Bsp119I	TTCGAA	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	66, 114
Bsp19I	CCATGG	1 cut(s)	793
BspANI	GGCC	1 cut(s)	541
BspCNI	CTCAG	2 cut(s)	671, 816
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	59
BspMI	ACCTGC	2 cut(s)	78, 298
BspT104I	TTCGAA	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	1 cut(s)	793
BssMI	GATC	2 cut(s)	66, 114
BssT1I	CCWWGG	1 cut(s)	793
Bst2UI	CCWGG	2 cut(s)	409, 754
Bst6I	CTCTTC	1 cut(s)	595
BstAPI	GCANNNNNTGC	1 cut(s)	1061
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	102, 274
BstDEI	CTNAG	2 cut(s)	658, 824
BstDSI	CCRYGG	1 cut(s)	793
BstEII	GGTNACC	1 cut(s)	328
BstF5I	GGATG	4 cut(s)	598, 894, 942, 1023
BstH2I	RGCGCY	1 cut(s)	806
BstHHI	GCGC	3 cut(s)	670, 805, 871
BstKTI	GATC	2 cut(s)	69, 117
BstMBI	GATC	2 cut(s)	66, 114
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 203, 304, 767, 875, 1061
BstNI	CCWGG	2 cut(s)	409, 754
BstNSI	RCATGY	2 cut(s)	104, 682
BstPAI	GACNNNNGTC	1 cut(s)	123
BstPI	GGTNACC	1 cut(s)	328
BstSCI	CCNGG	4 cut(s)	104, 332, 407, 752
BstV2I	GAAGAC	1 cut(s)	1101
BsuI	GTATCC	2 cut(s)	760, 934
BsuRI	GGCC	1 cut(s)	541
BtgI	CCRYGG	1 cut(s)	793
BtsCI	GGATG	4 cut(s)	598, 894, 942, 1023
BveI	ACCTGC	2 cut(s)	78, 298
Cac8I	GCNNGC	2 cut(s)	102, 274
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	3 cut(s)	670, 805, 871
Csp6I	GTAC	1 cut(s)	579
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	2 cut(s)	658, 824
DpnI	GATC	2 cut(s)	68, 116
DpnII	GATC	2 cut(s)	66, 114
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	793
Eco147I	AGGCCT	1 cut(s)	541
Eco57I	CTGAAG	1 cut(s)	1113
Eco88I	CYCGRG	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	328
EcoO65I	GGTNACC	1 cut(s)	328
EcoRII	CCWGG	2 cut(s)	407, 752
EcoT14I	CCWWGG	1 cut(s)	793
EcoT22I	ATGCAT	2 cut(s)	222, 1131
ErhI	CCWWGG	1 cut(s)	793
FaqI	GGGAC	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	958
FbaI	TGATCA	1 cut(s)	66
FokI	GGATG	4 cut(s)	605, 901, 949, 1030
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	3 cut(s)	669, 804, 870
GsaI	CCCAGC	2 cut(s)	302, 888
GsuI	CTGGAG	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	806
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	2 cut(s)	106, 333
HhaI	GCGC	3 cut(s)	670, 805, 871
Hin6I	GCGC	3 cut(s)	668, 803, 869
HinP1I	GCGC	3 cut(s)	668, 803, 869
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	2 cut(s)	632, 876
HinfI	GANTC	9 cut(s)	27, 44, 341, 404, 644, 650, 837, 947, 953
HpaII	CCGG	2 cut(s)	106, 333
Hpy166II	GTNNAC	3 cut(s)	249, 676, 855
Hpy188I	TCNGA	5 cut(s)	26, 57, 346, 649, 952
Hpy188III	TCNNGA	8 cut(s)	128, 212, 431, 701, 834, 898, 928, 1121
Hpy8I	GTNNAC	3 cut(s)	249, 676, 855
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	600, 1130
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 203, 304, 767, 875, 1061
HpyF3I	CTNAG	2 cut(s)	658, 824
HspAI	GCGC	3 cut(s)	668, 803, 869
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	66, 114
LweI	GCATC	6 cut(s)	207, 412, 697, 1000, 1008, 1023
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	328, 1108
MalI	GATC	2 cut(s)	68, 116
MboI	GATC	2 cut(s)	66, 114
MboII	GAAGA	4 cut(s)	612, 716, 773, 1106
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	8 cut(s)	70, 198, 426, 612, 711, 729, 809, 902
MlyI	GAGTC	2 cut(s)	38, 350
MmeI	TCCRAC	1 cut(s)	949
MnlI	CCTC	8 cut(s)	288, 405, 429, 490, 508, 596, 821, 1124
Mph1103I	ATGCAT	2 cut(s)	222, 1131
MseI	TTAA	4 cut(s)	20, 630, 873, 1026
MspI	CCGG	2 cut(s)	106, 333
MspR9I	CCNGG	4 cut(s)	106, 334, 409, 754
Mva1269I	GAATGC	3 cut(s)	460, 763, 1066
MvaI	CCWGG	2 cut(s)	409, 754
MwoI	GCNNNNNNNGC	6 cut(s)	152, 203, 304, 767, 875, 1061
NciI	CCSGG	2 cut(s)	106, 334
NcoI	CCATGG	1 cut(s)	793
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	2 cut(s)	66, 114
NlaIV	GGNNCC	1 cut(s)	59
NsiI	ATGCAT	2 cut(s)	222, 1131
NspI	RCATGY	2 cut(s)	104, 682
NspV	TTCGAA	1 cut(s)	383
PaeI	GCATGC	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	46
PagI	TCATGA	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	541
PciI	ACATGT	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	455
PctI	GAATGC	3 cut(s)	460, 763, 1066
PfeI	GAWTC	7 cut(s)	27, 404, 644, 650, 837, 947, 953
PfoI	TCCNGGA	2 cut(s)	407, 752
PleI	GAGTC	2 cut(s)	38, 349
PpsI	GAGTC	2 cut(s)	38, 349
PscI	ACATGT	1 cut(s)	678
PshAI	GACNNNNGTC	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	407, 752
PspEI	GGTNACC	1 cut(s)	328
PspFI	CCCAGC	2 cut(s)	298, 884
PspGI	CCWGG	2 cut(s)	407, 752
PspN4I	GGNNCC	1 cut(s)	59
PspXI	VCTCGAGB	1 cut(s)	46
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
SaqAI	TTAA	4 cut(s)	20, 630, 873, 1026
Sau3AI	GATC	2 cut(s)	66, 114
SchI	GAGTC	2 cut(s)	38, 350
ScrFI	CCNGG	4 cut(s)	106, 334, 409, 754
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	9 cut(s)	53, 92, 114, 208, 312, 636, 700, 880, 1108
SfaNI	GCATC	6 cut(s)	207, 412, 697, 1000, 1008, 1023
Sfr274I	CTCGAG	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	46
SmlI	CTYRAG	2 cut(s)	46, 266
SmoI	CTYRAG	2 cut(s)	46, 266
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	8 cut(s)	70, 198, 426, 612, 711, 729, 809, 902
SseBI	AGGCCT	1 cut(s)	541
SspMI	CTAG	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	4 cut(s)	104, 332, 407, 752
StyI	CCWWGG	1 cut(s)	793
TaqI	TCGA	4 cut(s)	47, 117, 383, 897
TasI	AATT	8 cut(s)	70, 198, 426, 612, 711, 729, 809, 902
TatI	WGTACW	1 cut(s)	578
TfiI	GAWTC	7 cut(s)	27, 404, 644, 650, 837, 947, 953
Tru1I	TTAA	4 cut(s)	20, 630, 873, 1026
Tru9I	TTAA	4 cut(s)	20, 630, 873, 1026
TspDTI	ATGAA	4 cut(s)	200, 302, 605, 945
TspGWI	ACGGA	1 cut(s)	830
XapI	RAATTY	1 cut(s)	612
XceI	RCATGY	2 cut(s)	104, 682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	46
XspI	CTAG	1 cut(s)	561
Zsp2I	ATGCAT	2 cut(s)	222, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.