RchiOBHm_Chr5g0009041

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012592
Physical Location & Seq
Reverse (-)
5962591 .. 5966058
3468 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28996

Sequence Viewer

Length: 2835 bp
ATGTTCAAATGGACCATGAAGCTAAGCTTATTCCATTCCCTCCAAAACCCTTGTCTTCCCCAACGACTTTACCTGCCCCTTAAACCTAAAACCCTCCCAACCCAATTTCTAAACTCTGCCAAACACATCCAAACTTTAGCTCAATTCTCCATACACCCACAAACCACCCCTATCCAAAGCTCACTCGAAACCCACAATTCTATCTCCTTCTCTAAGCTATTGTCGCAATGCGCTGCTTCCAAATCTGTGCGTGTGGGCATGGAAGTCCATGCCCACTTAATCAGATTCGGGTTGTCCCAAGACTCGAGCTTTCGGAACCATTTGATCAATTTCTACGCAAAAAGCAGGTTTTTTGGGCATGCCCGGAAGCTGATCGACGAAAGTCCTGAACCAGATTTGGTTGCTTGGTCTGCTTTGATTTCTGGGTATGCCCAGAATGGGCTTGGTATAGAAGCCATTTCATCTTTTCATGAGATGCATGGATTGGGGGTTAAGTGTAATGAGTTTACATTTCCTAGTGTGCTCAAGGCTTGCTCTAGTTCTAAAGATTTGCGGCTGGGAAAGCAGGTTCATGGGGTGGTGTTGGTTACCGGGTTTGAGTCCGATGAGTTTGTTGCGAATACTTTGGTTGTTATGTATTCGAAATGTGGGGAGTTTGGGGATTCCAGGAGGCTGTTTGATGCAATTCCGGAGAGGAATGTTGTTTCGTGGAATGCGTTGTTTTCGTGTTATGTGCAGAGTGATTTCTTTGGGGAGGCAATGGATTTGTTTGAGGAGATGGTTGTGAGTGGAATAAGGCCTAATGAGTATAGTCTGTCTAGTATAATAAATGCTTGTACTGGGTTGGGGGATGGTAGAAGAGGAAGGAAAATTCATGGATATATAGTTAAGCTTGGGTATGATTCTGATTCTTTCTCAGCCAATGCGCTTGTTCACATGTATGCAAAAGCCAAAGGTCTTGAAGATGCAATTTCAGTTTTTGATAAAATTGCACAACCAGATATTGTATCCTGGAATGCTGTTATTGCTGGTTGTGTTCTTCACAACTGCCATGGTCGGGCGCTCAAATTGTTCAGGCAACTGAGAGGGTCAGGAATCCGTCCTAATATGTTTACATTATCAAGTGCGCTTAAAGCTTGTGCTGGGATGGGTTTCGAGAAATTGGGTAGGCAGTTGCACTCTTTCTTGATAAGGATGGATACAGAATCAGATTCATATGTCAAAGTTGGACTGATAGATATGTATTGCAAGTGTGAGATGATGACTGATGCAAGGGTGCTTTTTAATATGATGCCAAAGAAAGACATGATTGCATGGAACGCTGTTATCTCTGGTCATTCACAGATGGCTGAAGACAGAGAAGCTGTAACCCTCTTTCCTGAAATGCATAGGGAAGGAATAGGATTCAATGAGACTACTTTGTCTACAGTCCTCAAATCCACCGCGAGCTTGCAGGCAGTAAAAGTTTGTGAACAAGTTCACGCTCTTTCAATCAAAATAGGTTTTCAGTCTGACATGTATGTTATAAATAGCCTTCTTGATACATATGGAAAATGTAGCCAAGTAGAAAATGCAGTAAGAATTTTTGAAGAATGCAAAACTGAAGATTTGGTGGCTTTCACATCAATGATCACTGCCTATGCTCAATATGAACAAGGCGAAGAAGCTCTTAAACTCTATGTGCAAATGCTAATGAAGGGGAACAAGCCTGATTCATTTGTATGCAGTTCTCTTCTGAATGCTTGTGCAAATTTGTCGGCATATGAGCAAGGGAAGCAGATTCATGTTCATATTCTGAAGTTTGGATTTTTGTCTGATGCTTTTGCCGGAAATTCCCTTGTTAATATGTATGCAAAATGTGGAGGCATAGATGATGCAGGTCGTGCTTTCTCTGAGGTACCTGAGAGAGGAATAGTTTCATGGTCTGCAATGATTGGTGGACTTGCTCAACACGGACATGGAAAAGAGGCCCTCAATATGTTCAATCAAATGCTCAGAGATGGTATTTGCCCCAATCATATTACTTTAGTGAGTGTCCTCTGTGCATGCAATCATGCAGGTTTGGTAACTGAAGCCAGAAAATATTTTGAGTCAATGAAAGAGTTGTTTGGAGTTGTGCCAAGGGAGGAGCATTTTGCCTGCATGATTGATCTTCTTGGCAGAGCAGGAAAGATAAGCGAGGCAATGGAGCTTGTCAACACAATGCCATTTCAAGCAAACGCTTCAGTTTGGGGGTCCCTTCTTGGTGCTGCAAGAATCCATAAAAATGTTGAGCTTGGTGAACGTGCTGCTGATATGCTCTTAGTTCTGGAGCCTGAGAAATCCGGTACCCATGTACTTCTTGCAAACATTTATGCAGCAGCTGGCATGTGGGACAAGGTAGCAAAAATGAGAAGACTTATGAAAAATAACCAGGTAAAGAAGGAACCTGGCATGAGTTGGATTGAGGTCCAAGACAAGGTACACACCTTTATTGTAGGAGATAGAAGTCATTCAAGAAGCACGGAGATATATGCAAAACTTGATGAGCTGCTTGACCTTGTGCATAAAGCTGGCTATGTTCCAATGGTGGAGATTGACCTCCATGATGTGGAACCAAGCGAGAAGGAGCGACTTCTGCGATACCACAGTGAGAAGCTTGCAGTGGCTTTCGCATTGATTGTCACTCCGCCTGGAGCTCCCATTAGAGTGAAGAAGAATTTAAGAGTATGTGTAGATTGCCATACTGCATTCAAGTTCATCTGTAAAATTGTCTCGAGGGAGATAATCGTGAGGGACATCAATAGATTCCATCATTTCAAAGATGGCTCATGCTCTTGTGGGGATTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

944

Amino Acids

105.19

Weight (kDa)

7.73

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 131 - 179 2.1e-08 PPR repeat family
PPR PF01535 134 - 164 4.3e-06 PPR repeat
PPR_2 PF13041 232 - 279 6.1e-12 PPR repeat family
PPR PF01535 235 - 265 5.7e-07 PPR repeat
PPR_2 PF13041 333 - 381 6.3e-09 PPR repeat family
PPR_2 PF13041 536 - 584 7.8e-10 PPR repeat family
PPR_2 PF13041 637 - 683 9.4e-10 PPR repeat family
PPR PF01535 639 - 669 1.7e-07 PPR repeat
E_motif PF20431 754 - 816 9e-22 E motif
Eplus_motif PF20430 821 - 846 2.3e-07 E+ motif
DYW_deaminase PF14432 852 - 944 1.6e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1526
AasI GACNNNNNNGTC 1 cut(s) 1420
Acc36I ACCTGC 5 cut(s) 81, 336, 556, 1868, 2048
Acc65I GGTACC 2 cut(s) 1897, 2327
AccB1I GGYRCC 2 cut(s) 1897, 2327
AccB7I CCANNNNNTGG 1 cut(s) 2590
AccI GTMKAC 1 cut(s) 1424
AccII CGCG 1 cut(s) 1445
AccIII TCCGGA 1 cut(s) 688
AciI CCGC 3 cut(s) 553, 1443, 2669
AcsI RAATTY 5 cut(s) 870, 1581, 1750, 1831, 2698
AcuI CTGAAG 5 cut(s) 1371, 1623, 1817, 2091, 2208
AfaI GTAC 5 cut(s) 838, 1899, 2329, 2337, 2463
AfiI CCNNNNNNNGG 5 cut(s) 438, 1057, 1907, 2458, 2590
AflIII ACRYGT 2 cut(s) 936, 1515
AjnI CCWGG 5 cut(s) 665, 1010, 2412, 2428, 2671
AloI GAACNNNNNNTCC 2 cut(s) 552, 584
Alw21I GWGCWC 2 cut(s) 525, 2680
Alw26I GTCTC 2 cut(s) 1406, 2758
AlwNI CAGNNNCTG 1 cut(s) 2363
Ama87I CYCGRG 2 cut(s) 304, 2755
Aor13HI TCCGGA 1 cut(s) 688
AoxI GGCC 2 cut(s) 797, 1968
ApeKI GCWGC 6 cut(s) 233, 2249, 2288, 2357, 2360, 2530
ApoI RAATTY 5 cut(s) 870, 1581, 1750, 1831, 2698
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
Asp700I GAANNNNTTC 3 cut(s) 1476, 1915, 2491
Asp718I GGTACC 2 cut(s) 1897, 2327
AspLEI GCGC 4 cut(s) 233, 928, 1063, 1129
AspS9I GGNCC 4 cut(s) 12, 1969, 2235, 2449
AsuC2I CCSGG 2 cut(s) 364, 592
AsuHPI GGTGA 1 cut(s) 2291
AsuII TTCGAA 1 cut(s) 641
AvaI CYCGRG 2 cut(s) 304, 2755
AvaII GGWCC 3 cut(s) 12, 2235, 2449
BaeI ACNNNNGTAYC 4 cut(s) 2319, 2352, 2614, 2647
BanI GGYRCC 2 cut(s) 1897, 2327
BanII GRGCYC 1 cut(s) 2680
BbsI GAAGAC 3 cut(s) 47, 1359, 2401
Bbv12I GWGCWC 2 cut(s) 525, 2680
BbvI GCAGC 6 cut(s) 220, 2236, 2275, 2369, 2372, 2517
BccI CCATC 8 cut(s) 772, 845, 1141, 1189, 1339, 1994, 2798, 2799
BcgI CGANNNNNNTGC 2 cut(s) 1737, 1771
BciT130I CCWGG 5 cut(s) 667, 1012, 2414, 2430, 2673
BciVI GTATCC 2 cut(s) 1018, 1192
BclI TGATCA 2 cut(s) 324, 1629
BcnI CCSGG 2 cut(s) 364, 592
BcoDI GTCTC 2 cut(s) 1406, 2758
BfaI CTAG 3 cut(s) 516, 537, 819
BfmI CTRYAG 1 cut(s) 1425
BfoI RGCGCY 1 cut(s) 1064
BfuAI ACCTGC 5 cut(s) 81, 336, 556, 1868, 2048
BfuI GTATCC 2 cut(s) 1018, 1192
BisI GCNGC 7 cut(s) 234, 554, 2250, 2289, 2358, 2361, 2531
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 7 cut(s) 235, 555, 2251, 2290, 2359, 2362, 2532
Bme1390I CCNGG 7 cut(s) 364, 592, 667, 1012, 2414, 2430, 2673
Bme18I GGWCC 3 cut(s) 12, 2235, 2449
BmeT110I CYCGRG 2 cut(s) 304, 2755
BmgT120I GGNCC 4 cut(s) 12, 1969, 2235, 2449
BmiI GGNNCC 8 cut(s) 317, 1899, 2236, 2237, 2313, 2329, 2427, 2595
BmrFI CCNGG 7 cut(s) 364, 592, 667, 1012, 2414, 2430, 2673
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 7 cut(s) 465, 670, 955, 1258, 1281, 1807, 1864
BmuI ACTGGG 1 cut(s) 849
BoxI GACNNNNGTC 1 cut(s) 381
BpiI GAAGAC 3 cut(s) 47, 1359, 2401
BpmI CTGGAG 2 cut(s) 2330, 2694
Bpu1102I GCTNAGC 1 cut(s) 23
Bpu14I TTCGAA 1 cut(s) 641
BpuEI CTTGAG 1 cut(s) 509
BpuMI CCSGG 2 cut(s) 364, 592
BsaJI CCNNGG 2 cut(s) 1051, 2120
BsaWI WCCGGW 2 cut(s) 688, 2324
Bsc4I CCNNNNNNNGG 5 cut(s) 438, 1057, 1907, 2458, 2590
Bse1I ACTGG 2 cut(s) 844, 2834
Bse3DI GCAATG 4 cut(s) 233, 765, 1935, 2190
BseAI TCCGGA 1 cut(s) 688
BseBI CCWGG 5 cut(s) 667, 1012, 2414, 2430, 2673
BseDI CCNNGG 2 cut(s) 1051, 2120
BseGI GGATG 4 cut(s) 126, 856, 1152, 1200
BseLI CCNNNNNNNGG 5 cut(s) 438, 1057, 1907, 2458, 2590
BseMI GCAATG 4 cut(s) 233, 765, 1935, 2190
BseMII CTCAG 6 cut(s) 930, 1073, 1884, 1893, 2008, 2307
BseNI ACTGG 2 cut(s) 844, 2834
BseRI GAGGAG 2 cut(s) 788, 2141
BseXI GCAGC 6 cut(s) 220, 2236, 2275, 2369, 2372, 2517
BseYI CCCAGC 2 cut(s) 556, 1142
BsgI GTGCAG 1 cut(s) 755
Bsh1236I CGCG 1 cut(s) 1445
BshFI GGCC 2 cut(s) 799, 1970
BshNI GGYRCC 2 cut(s) 1897, 2327
BsiHKAI GWGCWC 2 cut(s) 525, 2680
BsiHKCI CYCGRG 2 cut(s) 304, 2755
BsiSI CCGG 5 cut(s) 364, 591, 689, 1827, 2325
BslFI GGGAC 4 cut(s) 280, 2221, 2387, 2789
BslI CCNNNNNNNGG 5 cut(s) 438, 1057, 1907, 2458, 2590
BsmAI GTCTC 2 cut(s) 1406, 2758
BsmFI GGGAC 4 cut(s) 280, 2221, 2387, 2789
BsmI GAATGC 5 cut(s) 718, 1021, 1598, 1744, 2729
BsnI GGCC 2 cut(s) 799, 1970
BsoBI CYCGRG 2 cut(s) 304, 2755
Bsp119I TTCGAA 1 cut(s) 641
Bsp1286I GDGCHC 2 cut(s) 525, 2680
Bsp13I TCCGGA 1 cut(s) 688
Bsp143I GATC 4 cut(s) 324, 372, 1629, 2149
Bsp1720I GCTNAGC 1 cut(s) 23
Bsp19I CCATGG 1 cut(s) 1051
BspACI CCGC 3 cut(s) 553, 1443, 2669
BspANI GGCC 2 cut(s) 799, 1970
BspCNI CTCAG 6 cut(s) 929, 1074, 1885, 1894, 2007, 2308
BspEI TCCGGA 1 cut(s) 688
BspFNI CGCG 1 cut(s) 1445
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 8 cut(s) 317, 1899, 2236, 2237, 2313, 2329, 2427, 2595
BspMI ACCTGC 5 cut(s) 81, 336, 556, 1868, 2048
BspT104I TTCGAA 1 cut(s) 641
BspT107I GGYRCC 2 cut(s) 1897, 2327
BsrDI GCAATG 4 cut(s) 233, 765, 1935, 2190
BsrI ACTGG 2 cut(s) 844, 2834
BssECI CCNNGG 2 cut(s) 1051, 2120
BssMI GATC 4 cut(s) 324, 372, 1629, 2149
BssT1I CCWWGG 2 cut(s) 1051, 2120
Bst2UI CCWGG 5 cut(s) 667, 1012, 2414, 2430, 2673
Bst4CI ACNGT 2 cut(s) 1429, 2630
Bst6I CTCTTC 2 cut(s) 853, 1737
BstAPI GCANNNNNTGC 1 cut(s) 1883
BstBI TTCGAA 1 cut(s) 641
BstDEI CTNAG 9 cut(s) 23, 213, 916, 1082, 1893, 1902, 1994, 2302, 2316
BstDSI CCRYGG 1 cut(s) 1051
BstEII GGTNACC 1 cut(s) 586
BstENI CCTNNNNNAGG 1 cut(s) 1905
BstF5I GGATG 4 cut(s) 126, 856, 1152, 1200
BstFNI CGCG 1 cut(s) 1445
BstH2I RGCGCY 1 cut(s) 1064
BstHHI GCGC 4 cut(s) 233, 928, 1063, 1129
BstKTI GATC 4 cut(s) 327, 375, 1632, 2152
BstMAI GTCTC 2 cut(s) 1406, 2758
BstMBI GATC 4 cut(s) 324, 372, 1629, 2149
BstMWI GCNNNNNNNGC 9 cut(s) 223, 410, 562, 1025, 1133, 1319, 1774, 1883, 2617
BstNI CCWGG 5 cut(s) 667, 1012, 2414, 2430, 2673
BstNSI RCATGY 5 cut(s) 362, 940, 1519, 2049, 2371
BstPAI GACNNNNGTC 1 cut(s) 381
BstPI GGTNACC 1 cut(s) 586
BstSCI CCNGG 7 cut(s) 362, 590, 665, 1010, 2412, 2428, 2671
BstSFI CTRYAG 1 cut(s) 1425
BstUI CGCG 1 cut(s) 1445
BstV1I GCAGC 6 cut(s) 220, 2236, 2275, 2369, 2372, 2517
BstV2I GAAGAC 3 cut(s) 47, 1359, 2401
BsuI GTATCC 2 cut(s) 1018, 1192
BsuRI GGCC 2 cut(s) 799, 1970
BtgI CCRYGG 1 cut(s) 1051
BtsCI GGATG 4 cut(s) 126, 856, 1152, 1200
BtsI GCAGTG 2 cut(s) 1632, 2649
BtsIMutI CAGTG 3 cut(s) 1632, 2635, 2649
BveI ACCTGC 5 cut(s) 81, 336, 556, 1868, 2048
CaiI CAGNNNCTG 1 cut(s) 2363
CciI TCATGA 1 cut(s) 469
CfoI GCGC 4 cut(s) 233, 928, 1063, 1129
Cfr13I GGNCC 4 cut(s) 12, 1969, 2235, 2449
CsiI ACCWGGT 1 cut(s) 2412
Csp6I GTAC 5 cut(s) 837, 1898, 2328, 2336, 2462
CviQI GTAC 5 cut(s) 837, 1898, 2328, 2336, 2462
DdeI CTNAG 9 cut(s) 23, 213, 916, 1082, 1893, 1902, 1994, 2302, 2316
DpnI GATC 4 cut(s) 326, 374, 1631, 2151
DpnII GATC 4 cut(s) 324, 372, 1629, 2149
DrdI GACNNNNNNGTC 1 cut(s) 1420
DseDI GACNNNNNNGTC 1 cut(s) 1420
Eam1104I CTCTTC 2 cut(s) 853, 1737
EarI CTCTTC 2 cut(s) 853, 1737
EciI GGCGGA 1 cut(s) 2658
Ecl136II GAGCTC 1 cut(s) 2678
Eco130I CCWWGG 2 cut(s) 1051, 2120
Eco147I AGGCCT 1 cut(s) 799
Eco24I GRGCYC 1 cut(s) 2680
Eco47I GGWCC 3 cut(s) 12, 2235, 2449
Eco53kI GAGCTC 1 cut(s) 2678
Eco57I CTGAAG 5 cut(s) 1371, 1623, 1817, 2091, 2208
Eco88I CYCGRG 2 cut(s) 304, 2755
Eco91I GGTNACC 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 2678
EcoNI CCTNNNNNAGG 1 cut(s) 1905
EcoO109I RGGNCCY 2 cut(s) 1969, 2235
EcoO65I GGTNACC 1 cut(s) 586
EcoRII CCWGG 5 cut(s) 665, 1010, 2412, 2428, 2671
EcoT14I CCWWGG 2 cut(s) 1051, 2120
EcoT22I ATGCAT 2 cut(s) 480, 1389
EcoT38I GRGCYC 1 cut(s) 2680
ErhI CCWWGG 2 cut(s) 1051, 2120
FalI AAGNNNNNCTT 4 cut(s) 11, 43, 1653, 1685
FaqI GGGAC 4 cut(s) 280, 2221, 2387, 2789
FauNDI CATATG 3 cut(s) 1216, 1546, 1762
FbaI TGATCA 2 cut(s) 324, 1629
FblI GTMKAC 1 cut(s) 1424
Fnu4HI GCNGC 7 cut(s) 234, 554, 2250, 2289, 2358, 2361, 2531
FokI GGATG 4 cut(s) 113, 863, 1159, 1207
FriOI GRGCYC 1 cut(s) 2680
Fsp4HI GCNGC 7 cut(s) 234, 554, 2250, 2289, 2358, 2361, 2531
FspBI CTAG 3 cut(s) 516, 537, 819
GlaI GCGC 4 cut(s) 232, 927, 1062, 1128
GluI GCNGC 7 cut(s) 234, 554, 2250, 2289, 2358, 2361, 2531
GsaI CCCAGC 2 cut(s) 560, 1146
GsuI CTGGAG 2 cut(s) 2330, 2694
HaeII RGCGCY 1 cut(s) 1064
HaeIII GGCC 2 cut(s) 799, 1970
HapII CCGG 5 cut(s) 364, 591, 689, 1827, 2325
HhaI GCGC 4 cut(s) 233, 928, 1063, 1129
Hin6I GCGC 4 cut(s) 231, 926, 1061, 1127
HinP1I GCGC 4 cut(s) 231, 926, 1061, 1127
HincII GTYRAC 1 cut(s) 2197
HindII GTYRAC 1 cut(s) 2197
HindIII AAGCTT 4 cut(s) 25, 890, 1134, 2636
HpaII CCGG 5 cut(s) 364, 591, 689, 1827, 2325
HphI GGTGA 1 cut(s) 2291
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 8 cut(s) 217, 858, 1388, 1544, 1690, 2249, 2416, 2599
HpyCH4III ACNGT 2 cut(s) 1429, 2630
HpyCH4IV ACGT 1 cut(s) 2284
HpyF10VI GCNNNNNNNGC 9 cut(s) 223, 410, 562, 1025, 1133, 1319, 1774, 1883, 2617
HpyF3I CTNAG 9 cut(s) 23, 213, 916, 1082, 1893, 1902, 1994, 2302, 2316
HpySE526I ACGT 1 cut(s) 2284
HspAI GCGC 4 cut(s) 231, 926, 1061, 1127
KflI GGGWCCC 1 cut(s) 2235
Kpn2I TCCGGA 1 cut(s) 688
KpnI GGTACC 2 cut(s) 1901, 2331
Ksp22I TGATCA 2 cut(s) 324, 1629
Kzo9I GATC 4 cut(s) 324, 372, 1629, 2149
LmnI GCTCC 6 cut(s) 2128, 2188, 2311, 2608, 2675, 2683
Lsp1109I GCAGC 6 cut(s) 220, 2236, 2275, 2369, 2372, 2517
LweI GCATC 7 cut(s) 465, 670, 955, 1258, 1281, 1807, 1864
MabI ACCWGGT 1 cut(s) 2412
MaeI CTAG 3 cut(s) 516, 537, 819
MaeII ACGT 1 cut(s) 2284
MaeIII GTNAC 4 cut(s) 586, 1366, 2065, 2662
MalI GATC 4 cut(s) 326, 374, 1631, 2151
MboI GATC 4 cut(s) 324, 372, 1629, 2149
MhlI GDGCHC 2 cut(s) 525, 2680
MlyI GAGTC 3 cut(s) 296, 608, 2099
MmeI TCCRAC 2 cut(s) 1207, 2420
Mph1103I ATGCAT 2 cut(s) 480, 1389
MroI TCCGGA 1 cut(s) 688
MroXI GAANNNNTTC 3 cut(s) 1476, 1915, 2491
MseI TTAA 9 cut(s) 81, 278, 492, 888, 1131, 1284, 1671, 1842, 2702
MslI CAYNNNNRTG 6 cut(s) 939, 1625, 1720, 1956, 2265, 2687
MspA1I CMGCKG 1 cut(s) 2363
MspI CCGG 5 cut(s) 364, 591, 689, 1827, 2325
MspR9I CCNGG 7 cut(s) 364, 592, 667, 1012, 2414, 2430, 2673
Mva1269I GAATGC 5 cut(s) 718, 1021, 1598, 1744, 2729
MvaI CCWGG 5 cut(s) 667, 1012, 2414, 2430, 2673
MvnI CGCG 1 cut(s) 1445
MwoI GCNNNNNNNGC 9 cut(s) 223, 410, 562, 1025, 1133, 1319, 1774, 1883, 2617
NciI CCSGG 2 cut(s) 364, 592
NcoI CCATGG 1 cut(s) 1051
NdeI CATATG 3 cut(s) 1216, 1546, 1762
NdeII GATC 4 cut(s) 324, 372, 1629, 2149
NlaIV GGNNCC 8 cut(s) 317, 1899, 2236, 2237, 2313, 2329, 2427, 2595
NmuCI GTSAC 1 cut(s) 2662
NsiI ATGCAT 2 cut(s) 480, 1389
NspI RCATGY 5 cut(s) 362, 940, 1519, 2049, 2371
NspV TTCGAA 1 cut(s) 641
PaeI GCATGC 2 cut(s) 362, 2049
PaeR7I CTCGAG 2 cut(s) 304, 2755
PagI TCATGA 1 cut(s) 469
PceI AGGCCT 1 cut(s) 799
PciI ACATGT 2 cut(s) 936, 1515
PcsI WCGNNNNNNNCGW 1 cut(s) 713
PctI GAATGC 5 cut(s) 718, 1021, 1598, 1744, 2729
PdmI GAANNNNTTC 3 cut(s) 1476, 1915, 2491
PflMI CCANNNNNTGG 1 cut(s) 2590
PfoI TCCNGGA 2 cut(s) 665, 1010
PkrI GCNGC 7 cut(s) 235, 555, 2251, 2290, 2359, 2362, 2532
PleI GAGTC 3 cut(s) 296, 607, 2098
PpsI GAGTC 3 cut(s) 296, 607, 2098
PpuMI RGGWCCY 1 cut(s) 2235
PscI ACATGT 2 cut(s) 936, 1515
PshAI GACNNNNGTC 1 cut(s) 381
PsiI TTATAA 1 cut(s) 1526
Psp124BI GAGCTC 1 cut(s) 2680
Psp5II RGGWCCY 1 cut(s) 2235
Psp6I CCWGG 5 cut(s) 665, 1010, 2412, 2428, 2671
PspEI GGTNACC 1 cut(s) 586
PspFI CCCAGC 2 cut(s) 556, 1142
PspGI CCWGG 5 cut(s) 665, 1010, 2412, 2428, 2671
PspN4I GGNNCC 8 cut(s) 317, 1899, 2236, 2237, 2313, 2329, 2427, 2595
PspPI GGNCC 4 cut(s) 12, 1969, 2235, 2449
PspPPI RGGWCCY 1 cut(s) 2235
PspXI VCTCGAGB 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 2363
PvuII CAGCTG 1 cut(s) 2363
RsaI GTAC 5 cut(s) 838, 1899, 2329, 2337, 2463
RsaNI GTAC 5 cut(s) 837, 1898, 2328, 2336, 2462
RseI CAYNNNNRTG 6 cut(s) 939, 1625, 1720, 1956, 2265, 2687
SacI GAGCTC 1 cut(s) 2680
SaqAI TTAA 9 cut(s) 81, 278, 492, 888, 1131, 1284, 1671, 1842, 2702
SatI GCNGC 7 cut(s) 234, 554, 2250, 2289, 2358, 2361, 2531
Sau3AI GATC 4 cut(s) 324, 372, 1629, 2149
Sau96I GGNCC 4 cut(s) 12, 1969, 2235, 2449
SchI GAGTC 3 cut(s) 296, 608, 2099
ScrFI CCNGG 7 cut(s) 364, 592, 667, 1012, 2414, 2430, 2673
SduI GDGCHC 2 cut(s) 525, 2680
SexAI ACCWGGT 1 cut(s) 2412
SfaNI GCATC 7 cut(s) 465, 670, 955, 1258, 1281, 1807, 1864
SfcI CTRYAG 1 cut(s) 1425
Sfr274I CTCGAG 2 cut(s) 304, 2755
SfuI TTCGAA 1 cut(s) 641
SinI GGWCC 3 cut(s) 12, 2235, 2449
SlaI CTCGAG 2 cut(s) 304, 2755
SmiMI CAYNNNNRTG 6 cut(s) 939, 1625, 1720, 1956, 2265, 2687
SmlI CTYRAG 3 cut(s) 304, 524, 2755
SmoI CTYRAG 3 cut(s) 304, 524, 2755
SphI GCATGC 2 cut(s) 362, 2049
SseBI AGGCCT 1 cut(s) 799
SsiI CCGC 3 cut(s) 553, 1443, 2669
SspI AATATT 1 cut(s) 2084
SspMI CTAG 3 cut(s) 516, 537, 819
SstI GAGCTC 1 cut(s) 2680
StuI AGGCCT 1 cut(s) 799
StyD4I CCNGG 7 cut(s) 362, 590, 665, 1010, 2412, 2428, 2671
StyI CCWWGG 2 cut(s) 1051, 2120
TaaI ACNGT 2 cut(s) 1429, 2630
TaiI ACGT 1 cut(s) 2287
TaqI TCGA 6 cut(s) 186, 305, 375, 641, 1155, 2756
TatI WGTACW 2 cut(s) 836, 2335
TauI GCSGC 1 cut(s) 556
Tru1I TTAA 9 cut(s) 81, 278, 492, 888, 1131, 1284, 1671, 1842, 2702
Tru9I TTAA 9 cut(s) 81, 278, 492, 888, 1131, 1284, 1671, 1842, 2702
TscAI CASTG 3 cut(s) 1639, 2635, 2649
TseFI GTSAC 1 cut(s) 2662
TseI GCWGC 6 cut(s) 233, 2249, 2288, 2357, 2360, 2530
Tsp45I GTSAC 1 cut(s) 2662
TspGWI ACGGA 3 cut(s) 1088, 1968, 2519
TspRI CASTG 3 cut(s) 1639, 2635, 2649
Van91I CCANNNNNTGG 1 cut(s) 2590
VpaK11BI GGWCC 3 cut(s) 12, 2235, 2449
XagI CCTNNNNNAGG 1 cut(s) 1905
XapI RAATTY 5 cut(s) 870, 1581, 1750, 1831, 2698
XceI RCATGY 5 cut(s) 362, 940, 1519, 2049, 2371
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XhoI CTCGAG 2 cut(s) 304, 2755
XmiI GTMKAC 1 cut(s) 1424
XmnI GAANNNNTTC 3 cut(s) 1476, 1915, 2491
XspI CTAG 3 cut(s) 516, 537, 819
Zsp2I ATGCAT 2 cut(s) 480, 1389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.