RLG00000031625

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012592
Physical Location & Seq
Reverse (-)
6843005 .. 6845824
2820 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031625

Sequence Viewer

Length: 2271 bp
ATGAAGCTAAGCTTATTCCATTCCCTCCAAAACCCTTGTCTTCCACAACGACTTTACCTGCCCCTTAAACCCAAAACCCTCCCAACCCAATTTCTAAACCCTGCTAAACACATCCAAACCTTAGCTCAATTCTCCACACACCCACAAACCACCCCTATCCAAAGCTCTCTCGAAACCCACAATTCTATCTCCTTCTCTAAGCTATTGTCGCAATGCGCTGCTTCCAAATCTGTGCGTGTGGGCATGGAAGTCCATGCCCACTTAATCAGATTCGGGTTGTCCCAAGACTCGAGCTTTCGGAACCATTTGATCAATTTCTATGCAAAAAGCAGGTTTTTTGGGCATGCCCGGAAGCTGATCGACGAAAGTCCTGAACCAGATTTGGTTGCTTGGTCTGCTTTGATTTCTGGGTATGCCCAAAATGGGCTTGGTAGAGAAGCCATTTCAGCTTTTCATGAGATGCATGGATTGGGGGTGAAGTGTAATGAGTTTACATTTCCAAGTGTGCTCAAGGCTTGCTCTAGTTCTAAAGATTTGAGGCTGGGAAAGGAGGTTCATGGGGTGGTGTTGGTTACCGGGTTTGAGTCCGATGAGTTTGTTGCGAATACTTTGGTTGTTATGTATTCGAAATGTGGGGAGTTTGGGGATTCCAGGAGGCTGTTTGATGCAATTCCGGAGAGGAATGTTGTTTCGTGGAATGCATTGTTTTCGTGTTATGTGCAGAGTGATTTCTTTGGGGAGGCAATGGATTTGTTTGAGGAAATGGTTGTGAGTGGCATAACGCCTAATGAGTATAGTCTGTCTAGTATAATAAATGCTTGTACTGGGTTGGGAGATGGTAGAAGAGGAAGGAAAATTCATGGATATATAGTTAAGCTTGGGTATGATTCGGATGCTTTCTCAGCCAATGCGCTTGTTGACATGTATGCAAAAGCCAAAGGTCTTGAAGATGCAATTTCAGTTTTTGAGAAAATTGCACAACCAGATATTGTATCCTGGAATGCTGTTATTGCTGGTTGTGTTCTTCACAACTGCCATGGTCGGGCGCTCAAATTGTTCAGGCAACTGAGAGGGTCAGGAATCTGGCCAAACATGTTTACATTATCAAGTGCACTTAAAGCTTGTGCTGGGATGGGGTTCGAGAAATTGGGTAGGCAGTTGCACTCTTTCTTGATAAAGATGGATACAGAATCAGATTCATATGTCAAAGTTGGACTGATAGACATGTATTGCAAGTGTGAGATGATGACTGATGCAAGGGTGCTTTTTAATATGATGCCAAAGAAAGACATGATTGCATGGAACGCTGTTATCTCTGGTCATTCACAGATGGCTGAAGACAGAGAAGCTGTAACCCTCTTTCCTGAAATGCATAGGGAAGGAATAGGATTCAATGAGACTACTTTGTCTACAGTCCTCAAATCCACTGCGAGCTTGCAGGCAGTAAAAGTTTGTGAACAAGTTCACGCTCTTTCAATCAAAACAGGTTTTCAGTCTGACATGTATGTTATAAATAGCCTTCTTGATACATATGGAAAATGTGGCCAAGTAGAAAATGCAGTAAGAATTTTTGAAGAATGCAAAACTGAAGATTTGGTGGCTTTCACATCAATGATCACTGCCTATGCTCAATATGAACAAGGCGAAGAAGCTTTAAAACTCTATGTGCAAATGCTAGAGAGGGGGAACAAGCCTGATTCATTTGTGTGCAGTTCTCTTCTGAATGCTTGTGCAAATTTGTCCGCGTATGAGCAAGGGAAGCAGATTCATGTTCATATTCTGAAGTTTGGATTTTTGTCTGATGCTTTTGCTGGAAATTCCCTTGTTAATATGTATGCAAAATGTGGAAGCATAGATGATGCGGGTCGTGCTTTCTCCGAGGTACCTGAGAGAGGAATAGTTTCATGGTCTGCAATGATTGGAGGACTTGCTCAACACGGACAGGGAAAAGAGGCCCTCAATATGTTCAATCAGATGCTTGGAGATGCTGGCTATGTTCCAATGGTGGAGATTGACCTCCATGATGTGGAACAAAGCGAGAAGGAACGACTTCTGCGATACCACAGTGAGAAGCTTGCAGTGGCTTTCGCATTGATTGTCACTCCGCCTGGAGCTCCCATTAGAGTGAAGAAGAATTTAAGAGTATGTGTAGATTGCCATACTGCATTCAAGTTCATCTGTAAAATTGTCTCGAGGGAGATAATCGTGAGGGACATCAATAGATTCCATCATTTCAAAGATGGCTCATGCTCTTGTGGGGATTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

757

Amino Acids

84.0

Weight (kDa)

6.7

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 126 - 174 4.8e-10 PPR repeat family
PPR PF01535 129 - 159 3.5e-07 PPR repeat
PPR_2 PF13041 227 - 274 5.1e-12 PPR repeat family
PPR PF01535 230 - 260 4.4e-07 PPR repeat
PPR_2 PF13041 328 - 376 5e-08 PPR repeat family
PPR_2 PF13041 531 - 579 1e-10 PPR repeat family
PPR PF01535 634 - 660 2.7e-06 PPR repeat
DYW_deaminase PF14432 664 - 756 4.2e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1511
AasI GACNNNNNNGTC 1 cut(s) 1405
Acc36I ACCTGC 2 cut(s) 66, 321
Acc65I GGTACC 1 cut(s) 1882
AccB1I GGYRCC 1 cut(s) 1882
AccB7I CCANNNNNTGG 1 cut(s) 2026
AccI GTMKAC 1 cut(s) 1409
AccII CGCG 1 cut(s) 1745
AccIII TCCGGA 1 cut(s) 673
AciI CCGC 3 cut(s) 1743, 1862, 2105
AcoI YGGCCR 2 cut(s) 1085, 1543
AcsI RAATTY 5 cut(s) 855, 1566, 1735, 1816, 2134
AcuI CTGAAG 3 cut(s) 1356, 1608, 1802
AfaI GTAC 2 cut(s) 823, 1884
AfiI CCNNNNNNNGG 4 cut(s) 423, 1042, 1892, 2026
AflIII ACRYGT 4 cut(s) 921, 1092, 1224, 1500
AgsI TTSAA 7 cut(s) 947, 1393, 1476, 1574, 1969, 2170, 2236
AjnI CCWGG 3 cut(s) 650, 995, 2107
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
Alw21I GWGCWC 3 cut(s) 510, 1114, 2116
Alw26I GTCTC 2 cut(s) 1391, 2194
Alw44I GTGCAC 1 cut(s) 1110
Ama87I CYCGRG 2 cut(s) 289, 2191
Aor13HI TCCGGA 1 cut(s) 673
AoxI GGCC 3 cut(s) 1085, 1543, 1953
ApaLI GTGCAC 1 cut(s) 1110
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 5 cut(s) 855, 1566, 1735, 1816, 2134
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
Asp700I GAANNNNTTC 3 cut(s) 1461, 1900, 2049
Asp718I GGTACC 1 cut(s) 1882
AspLEI GCGC 3 cut(s) 218, 913, 1048
AspS9I GGNCC 1 cut(s) 1954
AsuC2I CCSGG 2 cut(s) 349, 577
AsuHPI GGTGA 1 cut(s) 487
AsuII TTCGAA 1 cut(s) 626
AvaI CYCGRG 2 cut(s) 289, 2191
BaeGI GKGCMC 1 cut(s) 1114
BaeI ACNNNNGTAYC 2 cut(s) 2050, 2083
BalI TGGCCA 2 cut(s) 1087, 1545
BanI GGYRCC 1 cut(s) 1882
BanII GRGCYC 1 cut(s) 2116
BbsI GAAGAC 2 cut(s) 32, 1344
Bbv12I GWGCWC 3 cut(s) 510, 1114, 2116
BbvI GCAGC 1 cut(s) 205
BccI CCATC 6 cut(s) 830, 1126, 1174, 1324, 2234, 2235
BcgI CGANNNNNNTGC 2 cut(s) 690, 724
BciT130I CCWGG 3 cut(s) 652, 997, 2109
BciVI GTATCC 2 cut(s) 1003, 1177
BclI TGATCA 2 cut(s) 309, 1614
BcnI CCSGG 2 cut(s) 349, 577
BcoDI GTCTC 2 cut(s) 1391, 2194
BfaI CTAG 3 cut(s) 522, 804, 1676
BfmI CTRYAG 1 cut(s) 1410
BfoI RGCGCY 1 cut(s) 1049
BfuAI ACCTGC 2 cut(s) 66, 321
BfuI GTATCC 2 cut(s) 1003, 1177
BisI GCNGC 1 cut(s) 219
BlpI GCTNAGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 5 cut(s) 349, 577, 652, 997, 2109
BmeT110I CYCGRG 2 cut(s) 289, 2191
BmgT120I GGNCC 1 cut(s) 1954
BmiI GGNNCC 2 cut(s) 302, 1884
BmrFI CCNGG 5 cut(s) 349, 577, 652, 997, 2109
BmrI ACTGGG 1 cut(s) 834
BmuI ACTGGG 1 cut(s) 834
BoxI GACNNNNGTC 1 cut(s) 366
BpiI GAAGAC 2 cut(s) 32, 1344
BpmI CTGGAG 1 cut(s) 2130
Bpu10I CCTNAGC 1 cut(s) 121
Bpu1102I GCTNAGC 1 cut(s) 8
Bpu14I TTCGAA 1 cut(s) 626
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 2 cut(s) 349, 577
BsaJI CCNNGG 2 cut(s) 1036, 1878
BsaWI WCCGGW 1 cut(s) 673
Bsc4I CCNNNNNNNGG 4 cut(s) 423, 1042, 1892, 2026
Bse1I ACTGG 2 cut(s) 829, 2270
Bse3DI GCAATG 3 cut(s) 218, 750, 1920
BseAI TCCGGA 1 cut(s) 673
BseBI CCWGG 3 cut(s) 652, 997, 2109
BseDI CCNNGG 2 cut(s) 1036, 1878
BseGI GGATG 3 cut(s) 111, 898, 1137
BseLI CCNNNNNNNGG 4 cut(s) 423, 1042, 1892, 2026
BseMI GCAATG 3 cut(s) 218, 750, 1920
BseMII CTCAG 3 cut(s) 915, 1058, 1878
BseNI ACTGG 2 cut(s) 829, 2270
BseSI GKGCMC 1 cut(s) 1114
BseXI GCAGC 1 cut(s) 205
BseYI CCCAGC 2 cut(s) 541, 1127
BsgI GTGCAG 2 cut(s) 740, 1729
Bsh1236I CGCG 1 cut(s) 1745
BshFI GGCC 3 cut(s) 1087, 1545, 1955
BshNI GGYRCC 1 cut(s) 1882
BsiHKAI GWGCWC 3 cut(s) 510, 1114, 2116
BsiHKCI CYCGRG 2 cut(s) 289, 2191
BsiSI CCGG 3 cut(s) 349, 576, 674
BslFI GGGAC 2 cut(s) 265, 2225
BslI CCNNNNNNNGG 4 cut(s) 423, 1042, 1892, 2026
BsmAI GTCTC 2 cut(s) 1391, 2194
BsmFI GGGAC 2 cut(s) 265, 2225
BsmI GAATGC 5 cut(s) 703, 1006, 1583, 1729, 2165
BsnI GGCC 3 cut(s) 1087, 1545, 1955
BsoBI CYCGRG 2 cut(s) 289, 2191
Bsp119I TTCGAA 1 cut(s) 626
Bsp1286I GDGCHC 3 cut(s) 510, 1114, 2116
Bsp13I TCCGGA 1 cut(s) 673
Bsp143I GATC 3 cut(s) 309, 357, 1614
Bsp1720I GCTNAGC 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 1036
BspACI CCGC 3 cut(s) 1743, 1862, 2105
BspANI GGCC 3 cut(s) 1087, 1545, 1955
BspCNI CTCAG 3 cut(s) 914, 1059, 1879
BspEI TCCGGA 1 cut(s) 673
BspFNI CGCG 1 cut(s) 1745
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 302, 1884
BspMI ACCTGC 2 cut(s) 66, 321
BspT104I TTCGAA 1 cut(s) 626
BspT107I GGYRCC 1 cut(s) 1882
BsrDI GCAATG 3 cut(s) 218, 750, 1920
BsrI ACTGG 2 cut(s) 829, 2270
BssECI CCNNGG 2 cut(s) 1036, 1878
BssMI GATC 3 cut(s) 309, 357, 1614
BssT1I CCWWGG 1 cut(s) 1036
Bst2UI CCWGG 3 cut(s) 652, 997, 2109
Bst4CI ACNGT 2 cut(s) 1414, 2066
Bst6I CTCTTC 2 cut(s) 838, 1722
BstBI TTCGAA 1 cut(s) 626
BstC8I GCNNGC 7 cut(s) 345, 517, 1432, 1436, 1440, 1990, 2076
BstDEI CTNAG 6 cut(s) 8, 121, 198, 901, 1067, 1887
BstDSI CCRYGG 1 cut(s) 1036
BstEII GGTNACC 1 cut(s) 571
BstENI CCTNNNNNAGG 1 cut(s) 1890
BstF5I GGATG 3 cut(s) 111, 898, 1137
BstFNI CGCG 1 cut(s) 1745
BstH2I RGCGCY 1 cut(s) 1049
BstHHI GCGC 3 cut(s) 218, 913, 1048
BstKTI GATC 3 cut(s) 312, 360, 1617
BstMAI GTCTC 2 cut(s) 1391, 2194
BstMBI GATC 3 cut(s) 309, 357, 1614
BstMWI GCNNNNNNNGC 9 cut(s) 208, 395, 446, 902, 1010, 1118, 1304, 1759, 1868
BstNI CCWGG 3 cut(s) 652, 997, 2109
BstNSI RCATGY 5 cut(s) 347, 925, 1096, 1228, 1504
BstPAI GACNNNNGTC 1 cut(s) 366
BstPI GGTNACC 1 cut(s) 571
BstSCI CCNGG 5 cut(s) 347, 575, 650, 995, 2107
BstSFI CTRYAG 1 cut(s) 1410
BstSLI GKGCMC 1 cut(s) 1114
BstUI CGCG 1 cut(s) 1745
BstV1I GCAGC 1 cut(s) 205
BstV2I GAAGAC 2 cut(s) 32, 1344
BsuI GTATCC 2 cut(s) 1003, 1177
BsuRI GGCC 3 cut(s) 1087, 1545, 1955
BtgI CCRYGG 1 cut(s) 1036
BtsCI GGATG 3 cut(s) 111, 898, 1137
BtsI GCAGTG 3 cut(s) 1425, 1617, 2085
BtsIMutI CAGTG 4 cut(s) 1425, 1617, 2071, 2085
BveI ACCTGC 2 cut(s) 66, 321
Cac8I GCNNGC 7 cut(s) 345, 517, 1432, 1436, 1440, 1990, 2076
CciI TCATGA 1 cut(s) 454
CfoI GCGC 3 cut(s) 218, 913, 1048
Cfr13I GGNCC 1 cut(s) 1954
Csp6I GTAC 2 cut(s) 822, 1883
CviQI GTAC 2 cut(s) 822, 1883
DdeI CTNAG 6 cut(s) 8, 121, 198, 901, 1067, 1887
DpnI GATC 3 cut(s) 311, 359, 1616
DpnII GATC 3 cut(s) 309, 357, 1614
DraI TTTAAA 1 cut(s) 1656
DrdI GACNNNNNNGTC 1 cut(s) 1405
DseDI GACNNNNNNGTC 1 cut(s) 1405
EaeI YGGCCR 2 cut(s) 1085, 1543
Eam1104I CTCTTC 2 cut(s) 838, 1722
EarI CTCTTC 2 cut(s) 838, 1722
EciI GGCGGA 1 cut(s) 2094
Ecl136II GAGCTC 1 cut(s) 2114
Eco130I CCWWGG 1 cut(s) 1036
Eco24I GRGCYC 1 cut(s) 2116
Eco53kI GAGCTC 1 cut(s) 2114
Eco57I CTGAAG 3 cut(s) 1356, 1608, 1802
Eco88I CYCGRG 2 cut(s) 289, 2191
Eco91I GGTNACC 1 cut(s) 571
EcoICRI GAGCTC 1 cut(s) 2114
EcoNI CCTNNNNNAGG 1 cut(s) 1890
EcoO109I RGGNCCY 1 cut(s) 1954
EcoO65I GGTNACC 1 cut(s) 571
EcoRII CCWGG 3 cut(s) 650, 995, 2107
EcoT14I CCWWGG 1 cut(s) 1036
EcoT22I ATGCAT 3 cut(s) 465, 703, 1374
EcoT38I GRGCYC 1 cut(s) 2116
ErhI CCWWGG 1 cut(s) 1036
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 2 cut(s) 265, 2225
FauI CCCGC 1 cut(s) 1855
FauNDI CATATG 2 cut(s) 1201, 1531
FbaI TGATCA 2 cut(s) 309, 1614
FblI GTMKAC 1 cut(s) 1409
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 3 cut(s) 98, 905, 1144
FriOI GRGCYC 1 cut(s) 2116
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 3 cut(s) 522, 804, 1676
GlaI GCGC 3 cut(s) 217, 912, 1047
GluI GCNGC 1 cut(s) 219
GsaI CCCAGC 2 cut(s) 545, 1131
GsuI CTGGAG 1 cut(s) 2130
HaeII RGCGCY 1 cut(s) 1049
HaeIII GGCC 3 cut(s) 1087, 1545, 1955
HapII CCGG 3 cut(s) 349, 576, 674
HhaI GCGC 3 cut(s) 218, 913, 1048
Hin6I GCGC 3 cut(s) 216, 911, 1046
HinP1I GCGC 3 cut(s) 216, 911, 1046
HincII GTYRAC 1 cut(s) 919
HindII GTYRAC 1 cut(s) 919
HindIII AAGCTT 5 cut(s) 10, 875, 1119, 1650, 2072
HpaII CCGG 3 cut(s) 349, 576, 674
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 7 cut(s) 492, 919, 1098, 1112, 1410, 1457, 1465
Hpy8I GTNNAC 7 cut(s) 492, 919, 1098, 1112, 1410, 1457, 1465
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 5 cut(s) 202, 843, 1373, 1529, 2035
HpyCH4III ACNGT 2 cut(s) 1414, 2066
HpyF10VI GCNNNNNNNGC 9 cut(s) 208, 395, 446, 902, 1010, 1118, 1304, 1759, 1868
HpyF3I CTNAG 6 cut(s) 8, 121, 198, 901, 1067, 1887
HspAI GCGC 3 cut(s) 216, 911, 1046
Kpn2I TCCGGA 1 cut(s) 673
KpnI GGTACC 1 cut(s) 1886
Ksp22I TGATCA 2 cut(s) 309, 1614
Kzo9I GATC 3 cut(s) 309, 357, 1614
LmnI GCTCC 2 cut(s) 2111, 2119
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 3 cut(s) 522, 804, 1676
MaeIII GTNAC 3 cut(s) 571, 1351, 2098
MalI GATC 3 cut(s) 311, 359, 1616
MboI GATC 3 cut(s) 309, 357, 1614
MhlI GDGCHC 3 cut(s) 510, 1114, 2116
MlsI TGGCCA 2 cut(s) 1087, 1545
MluNI TGGCCA 2 cut(s) 1087, 1545
MlyI GAGTC 2 cut(s) 281, 593
MmeI TCCRAC 1 cut(s) 1192
Mox20I TGGCCA 2 cut(s) 1087, 1545
Mph1103I ATGCAT 3 cut(s) 465, 703, 1374
MroI TCCGGA 1 cut(s) 673
MroXI GAANNNNTTC 3 cut(s) 1461, 1900, 2049
MscI TGGCCA 2 cut(s) 1087, 1545
MseI TTAA 8 cut(s) 66, 263, 873, 1116, 1269, 1655, 1827, 2138
MslI CAYNNNNRTG 3 cut(s) 1610, 1705, 2123
Msp20I TGGCCA 2 cut(s) 1087, 1545
MspI CCGG 3 cut(s) 349, 576, 674
MspR9I CCNGG 5 cut(s) 349, 577, 652, 997, 2109
Mva1269I GAATGC 5 cut(s) 703, 1006, 1583, 1729, 2165
MvaI CCWGG 3 cut(s) 652, 997, 2109
MvnI CGCG 1 cut(s) 1745
MwoI GCNNNNNNNGC 9 cut(s) 208, 395, 446, 902, 1010, 1118, 1304, 1759, 1868
NciI CCSGG 2 cut(s) 349, 577
NcoI CCATGG 1 cut(s) 1036
NdeI CATATG 2 cut(s) 1201, 1531
NdeII GATC 3 cut(s) 309, 357, 1614
NlaIV GGNNCC 2 cut(s) 302, 1884
NmuCI GTSAC 1 cut(s) 2098
NsiI ATGCAT 3 cut(s) 465, 703, 1374
NspI RCATGY 5 cut(s) 347, 925, 1096, 1228, 1504
NspV TTCGAA 1 cut(s) 626
PaeI GCATGC 1 cut(s) 347
PaeR7I CTCGAG 2 cut(s) 289, 2191
PagI TCATGA 1 cut(s) 454
PciI ACATGT 4 cut(s) 921, 1092, 1224, 1500
PcsI WCGNNNNNNNCGW 1 cut(s) 2053
PctI GAATGC 5 cut(s) 703, 1006, 1583, 1729, 2165
PdmI GAANNNNTTC 3 cut(s) 1461, 1900, 2049
PflMI CCANNNNNTGG 1 cut(s) 2026
PfoI TCCNGGA 2 cut(s) 650, 995
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 2 cut(s) 281, 592
PpsI GAGTC 2 cut(s) 281, 592
PscI ACATGT 4 cut(s) 921, 1092, 1224, 1500
PshAI GACNNNNGTC 1 cut(s) 366
PsiI TTATAA 1 cut(s) 1511
Psp124BI GAGCTC 1 cut(s) 2116
Psp6I CCWGG 3 cut(s) 650, 995, 2107
PspEI GGTNACC 1 cut(s) 571
PspFI CCCAGC 2 cut(s) 541, 1127
PspGI CCWGG 3 cut(s) 650, 995, 2107
PspN4I GGNNCC 2 cut(s) 302, 1884
PspPI GGNCC 1 cut(s) 1954
PspXI VCTCGAGB 1 cut(s) 289
RsaI GTAC 2 cut(s) 823, 1884
RsaNI GTAC 2 cut(s) 822, 1883
RseI CAYNNNNRTG 3 cut(s) 1610, 1705, 2123
SacI GAGCTC 1 cut(s) 2116
SaqAI TTAA 8 cut(s) 66, 263, 873, 1116, 1269, 1655, 1827, 2138
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 3 cut(s) 309, 357, 1614
Sau96I GGNCC 1 cut(s) 1954
SchI GAGTC 2 cut(s) 281, 593
ScrFI CCNGG 5 cut(s) 349, 577, 652, 997, 2109
SduI GDGCHC 3 cut(s) 510, 1114, 2116
SfcI CTRYAG 1 cut(s) 1410
Sfr274I CTCGAG 2 cut(s) 289, 2191
SfuI TTCGAA 1 cut(s) 626
SlaI CTCGAG 2 cut(s) 289, 2191
SmiMI CAYNNNNRTG 3 cut(s) 1610, 1705, 2123
SmlI CTYRAG 3 cut(s) 289, 509, 2191
SmoI CTYRAG 3 cut(s) 289, 509, 2191
SphI GCATGC 1 cut(s) 347
SsiI CCGC 3 cut(s) 1743, 1862, 2105
SspMI CTAG 3 cut(s) 522, 804, 1676
SstI GAGCTC 1 cut(s) 2116
StyD4I CCNGG 5 cut(s) 347, 575, 650, 995, 2107
StyI CCWWGG 1 cut(s) 1036
TaaI ACNGT 2 cut(s) 1414, 2066
TaqI TCGA 6 cut(s) 171, 290, 360, 626, 1140, 2192
TatI WGTACW 1 cut(s) 821
Tru1I TTAA 8 cut(s) 66, 263, 873, 1116, 1269, 1655, 1827, 2138
Tru9I TTAA 8 cut(s) 66, 263, 873, 1116, 1269, 1655, 1827, 2138
TscAI CASTG 4 cut(s) 1432, 1624, 2071, 2085
TseFI GTSAC 1 cut(s) 2098
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 2098
TspGWI ACGGA 1 cut(s) 1953
TspRI CASTG 4 cut(s) 1432, 1624, 2071, 2085
Van91I CCANNNNNTGG 1 cut(s) 2026
VneI GTGCAC 1 cut(s) 1110
XagI CCTNNNNNAGG 1 cut(s) 1890
XapI RAATTY 5 cut(s) 855, 1566, 1735, 1816, 2134
XceI RCATGY 5 cut(s) 347, 925, 1096, 1228, 1504
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XhoI CTCGAG 2 cut(s) 289, 2191
XmiI GTMKAC 1 cut(s) 1409
XmnI GAANNNNTTC 3 cut(s) 1461, 1900, 2049
XspI CTAG 3 cut(s) 522, 804, 1676
Zsp2I ATGCAT 3 cut(s) 465, 703, 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.