FvH4_7g05130

Dual specificity phosphatase, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013708
Physical Location & Seq
Forward (+)
5509309 .. 5511859
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05130.t2

Sequence Viewer

Length: 765 bp
ATGGGATTGGGTCTATCAGCTCTGATAGGGTTGAAAGCGGGTGTATTGCTGTGGATGTTTGCATATGTGAGAAGCTTGGAATGGAGGGTGTTGTCAATCCCATTGTTATATGCGTCTTTGGTATCGATGTTAGTCTCAGTTGCTTCTCACCCTTCCATAAACCTTCCGATGCTGTTGGGCAAGAGCTCCGACGGCAGTTTCCCGATATGGTCGATCATCATGTTCAGCCCTTATTTATATTTCGTCCGCCTATTCTCGGCATTGCGAAGACTATGCAGTGGGGAAGCTCCATACAGCCAAGTGGGTGAGGGTTTATATGTTGGCGGATGGCCTTCTTCGCCGGATAAGCTCCCTCCCGGTAATCCTGCCATTATCGATTGCACTTGTGAATTGCCAAGAAGTTGTTGGTCGGACCAGAGTTATCTCTGCGTCCCAACATGGGACACTAGGTCTCCCAACCCCTCTCAGATTGAATCCGCTGTCAAGTGGGCTTCCAGAAAGAAGGACCAGAACAGGCCCGTTTTTGTCCACTGCGCATACGGTCATGGAAGAAGTGTGGCTGTTATGTGTGCGCTATTAGTTGCTCTTGGCGTGGCAGAGGATTGGAAGAGTGCTGAAAAATTAATTCGGGAAAGACGTCCTTACATTAGAATGAATTCTCTACACCGCAAGGCTCTGGAAGAGTGGTCAAAACATCGGTTATCCCCTTCTAAGAAGAGTGGAGAATTGAATGCTGTTAGGTCAGATTGCGGAAAGAAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSPc

Protein Analysis

255

Amino Acids

28.34

Weight (kDa)

9.43

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013708)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05130
malus_domestica MD02G1261300.v1.1 MD04G1248500.v1.1 MD07G1059500.v1.1
prunus_persica Prupe.2G067300_v2.0.a1
pyrus_communis pycom02g22340 pycom07g04560 pycom07g04570
rosa_chinensis RchiOBHm_Chr1g0331721
rosa_laevigata RLG00000029719
rosa_multiflora Rmu_co8516993.1_g000001
rosa_roxburghii Rroxscaffold_4G00318850
rosa_rugosa Rorug01G0095900
rosa_samantha Rh1AG119600 Rh1BG091200 Rh1CG114700 Rh1DG125100
rosa_wichuraiana Rw1G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 640
Acc16I TGCGCA 1 cut(s) 535
AciI CCGC 6 cut(s) 38, 247, 324, 477, 667, 750
AcsI RAATTY 1 cut(s) 655
AcyI GRCGYC 1 cut(s) 637
AfiI CCNNNNNNNGG 2 cut(s) 256, 439
AgsI TTSAA 3 cut(s) 34, 473, 730
AhdI GACNNNNNGTC 1 cut(s) 448
AluBI AGCT 5 cut(s) 20, 75, 186, 287, 349
AluI AGCT 5 cut(s) 20, 75, 186, 287, 349
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 2 cut(s) 139, 456
AoxI GGCC 2 cut(s) 329, 515
ApoI RAATTY 1 cut(s) 655
AseI ATTAAT 1 cut(s) 623
Asp700I GAANNNNTTC 1 cut(s) 655
AspLEI GCGC 2 cut(s) 536, 574
AspS9I GGNCC 3 cut(s) 412, 505, 516
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 140, 317
AvaII GGWCC 2 cut(s) 412, 505
BanII GRGCYC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 188
BccI CCATC 1 cut(s) 321
BceAI ACGGC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 139, 456
BfaI CTAG 1 cut(s) 447
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 2 cut(s) 412, 505
BmeRI GACNNNNNGTC 1 cut(s) 448
BmgT120I GGNCC 3 cut(s) 412, 505, 516
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 357
Bsa29I ATCGAT 2 cut(s) 125, 375
BsaHI GRCGYC 1 cut(s) 637
BsaI GGTCTC 1 cut(s) 456
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 439
Bse3DI GCAATG 1 cut(s) 260
BseCI ATCGAT 2 cut(s) 125, 375
BseGI GGATG 2 cut(s) 60, 332
BseLI CCNNNNNNNGG 2 cut(s) 256, 439
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 2 cut(s) 150, 479
BshFI GGCC 2 cut(s) 331, 517
BshVI ATCGAT 2 cut(s) 125, 375
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 2 cut(s) 341, 357
BslFI GGGAC 2 cut(s) 416, 455
BslI CCNNNNNNNGG 2 cut(s) 256, 439
BsmAI GTCTC 2 cut(s) 139, 456
BsmFI GGGAC 2 cut(s) 416, 455
BsmI GAATGC 1 cut(s) 736
BsnI GGCC 2 cut(s) 331, 517
Bso31I GGTCTC 1 cut(s) 456
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 6 cut(s) 38, 247, 324, 477, 667, 750
BspANI GGCC 2 cut(s) 331, 517
BspCNI CTCAG 2 cut(s) 149, 478
BspDI ATCGAT 2 cut(s) 125, 375
BspTNI GGTCTC 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 260
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 637
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 3 cut(s) 602, 675, 710
BstACI GRCGYC 1 cut(s) 637
BstDEI CTNAG 3 cut(s) 136, 465, 711
BstF5I GGATG 2 cut(s) 60, 332
BstHHI GCGC 2 cut(s) 536, 574
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 2 cut(s) 139, 456
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 3 cut(s) 192, 337, 346
BstSCI CCNGG 1 cut(s) 355
BstV2I GAAGAC 1 cut(s) 274
Bsu15I ATCGAT 2 cut(s) 125, 375
BsuRI GGCC 2 cut(s) 331, 517
BsuTUI ATCGAT 2 cut(s) 125, 375
BtsCI GGATG 2 cut(s) 60, 332
BtsI GCAGTG 2 cut(s) 283, 529
BtsIMutI CAGTG 2 cut(s) 283, 529
CfoI GCGC 2 cut(s) 536, 574
Cfr13I GGNCC 3 cut(s) 412, 505, 516
ClaI ATCGAT 2 cut(s) 125, 375
CseI GACGC 2 cut(s) 102, 418
CviAII CATG 3 cut(s) 220, 438, 545
DdeI CTNAG 3 cut(s) 136, 465, 711
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
DriI GACNNNNNGTC 1 cut(s) 448
Eam1104I CTCTTC 3 cut(s) 602, 675, 710
Eam1105I GACNNNNNGTC 1 cut(s) 448
EarI CTCTTC 3 cut(s) 602, 675, 710
EciI GGCGGA 2 cut(s) 236, 339
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 2 cut(s) 412, 505
Eco53kI GAGCTC 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 3 cut(s) 223, 441, 548
FalI AAGNNNNNCTT 2 cut(s) 625, 657
FaqI GGGAC 2 cut(s) 416, 455
FatI CATG 3 cut(s) 219, 437, 544
FauI CCCGC 1 cut(s) 31
FauNDI CATATG 1 cut(s) 64
FokI GGATG 2 cut(s) 67, 339
FriOI GRGCYC 1 cut(s) 188
FspBI CTAG 1 cut(s) 447
FspI TGCGCA 1 cut(s) 535
GlaI GCGC 2 cut(s) 535, 573
HaeIII GGCC 2 cut(s) 331, 517
HapII CCGG 2 cut(s) 341, 357
HgaI GACGC 2 cut(s) 102, 418
HhaI GCGC 2 cut(s) 536, 574
Hin1I GRCGYC 1 cut(s) 637
Hin1II CATG 3 cut(s) 223, 441, 548
Hin6I GCGC 2 cut(s) 534, 572
HinP1I GCGC 2 cut(s) 534, 572
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 1 cut(s) 473
HpaII CCGG 2 cut(s) 341, 357
HphI GGTGA 2 cut(s) 140, 317
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 6 cut(s) 24, 168, 190, 412, 468, 745
Hpy188III TCNNGA 4 cut(s) 202, 495, 629, 677
Hpy8I GTNNAC 1 cut(s) 529
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 5 cut(s) 162, 173, 342, 496, 717
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 3 cut(s) 62, 276, 381
HpyF10VI GCNNNNNNNGC 3 cut(s) 192, 337, 346
HpyF3I CTNAG 3 cut(s) 136, 465, 711
HpySE526I ACGT 1 cut(s) 637
Hsp92I GRCGYC 1 cut(s) 637
Hsp92II CATG 3 cut(s) 223, 441, 548
HspAI GCGC 2 cut(s) 534, 572
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 3 cut(s) 191, 292, 354
LpnPI CCDG 8 cut(s) 354, 370, 378, 428, 499, 508, 521, 662
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 447
MaeII ACGT 1 cut(s) 637
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 6 cut(s) 279, 327, 561, 619, 692, 727
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 5 cut(s) 389, 620, 624, 655, 725
MmeI TCCRAC 2 cut(s) 213, 390
MnlI CCTC 5 cut(s) 78, 301, 363, 472, 592
MroXI GAANNNNTTC 1 cut(s) 655
MseI TTAA 2 cut(s) 623, 763
MslI CAYNNNNRTG 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 341, 357
MspR9I CCNGG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 736
MwoI GCNNNNNNNGC 3 cut(s) 192, 337, 346
NciI CCSGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 64
NdeII GATC 1 cut(s) 213
NlaIII CATG 3 cut(s) 223, 441, 548
NmeAIII GCCGAG 1 cut(s) 236
NsbI TGCGCA 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 634
PctI GAATGC 1 cut(s) 736
PdmI GAANNNNTTC 1 cut(s) 655
PfeI GAWTC 1 cut(s) 473
PshBI ATTAAT 1 cut(s) 623
Psp124BI GAGCTC 1 cut(s) 188
PspPI GGNCC 3 cut(s) 412, 505, 516
RseI CAYNNNNRTG 1 cut(s) 650
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 623, 763
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 3 cut(s) 412, 505, 516
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 1 cut(s) 188
SetI ASST 9 cut(s) 22, 77, 165, 188, 289, 351, 452, 640, 743
SfaNI GCATC 1 cut(s) 159
SinI GGWCC 2 cut(s) 412, 505
SmiMI CAYNNNNRTG 1 cut(s) 650
Sse9I AATT 5 cut(s) 389, 620, 624, 655, 725
SsiI CCGC 6 cut(s) 38, 247, 324, 477, 667, 750
SspI AATATT 1 cut(s) 761
SspMI CTAG 1 cut(s) 447
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 1 cut(s) 640
TaqI TCGA 3 cut(s) 125, 212, 375
TasI AATT 5 cut(s) 389, 620, 624, 655, 725
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 2 cut(s) 623, 763
Tru9I TTAA 2 cut(s) 623, 763
TscAI CASTG 2 cut(s) 283, 536
TspDTI ATGAA 1 cut(s) 668
TspRI CASTG 2 cut(s) 283, 536
VpaK11BI GGWCC 2 cut(s) 412, 505
VspI ATTAAT 1 cut(s) 623
XapI RAATTY 1 cut(s) 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 655
XspI CTAG 1 cut(s) 447
ZraI GACGTC 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.