Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013708

Physical Location & Seq

Genomic Coordinates Forward (+)

5519763 .. 5522384

Gene Structure 2622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1059500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGGTCATGGTCTATCGGTTCGGATAGGGTGGAAGGCAGCAGTATTGTTCGCGTTGTTTGCATGCCTCAAAAGCTCTGGTTTCACAGTGCTTTCCATACCATTTTTATATGCCTCTTTGGTTTTAGCTTTGGTTTCACTTGCTGCTCATCCATTGATAGACCTTCCCATGCTGTTGGGGAAGAACCCAGATGGGAGTTTCCCCACTTGGTCGGTTATAATGTTCAGCCCCTATTTGTATTTCGTCCGCGTCTCCTCGGCATTTCAGAGGTTGCATAGTAGGGAGGCTCTTTACACTGAAATCTCCGAGGGTTTGTTCGTTGGCGGGTGGCCTTCTTCGCCGGATAAACTGCCACCAGGTGACCCTGCCATTGTTGATTGCACTTGTGAATTGCCAAGGAAGTGTGAGGTTACAGGGCATTCTTATTTGTGTGTGCCAACATGGGACACGAGGGCTCCTCCGCCGGCTGCCATTGAATCTGCTGTCAAGTGGGCTTGCCGAAAAAGGGCTCAGAATAAGCCTGTTTTCGTCCACTGCGCCCACGGTCATGGGAGAAGTGTAGCTGTCATGTGTGCACTGCTAGTTGCTCTTGGGGTGACAGAGGACTGGAAAAATGCTGAGAAACTAATTCGAGAGAAACGTCCTCACATTAGGATGAATGCTCTACACCGCAGGGCTCTGGAAGAGTGGTCAAAACATCGGTTATCTCCTTCTAAGAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

242

Amino Acids

26.71

Weight (kDa)

9.44

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	124 - 232	1.3e-11	Dual specificity phosphatase, catalytic domain
Tc-R-P	PF22785	138 - 198	4.7e-07	Polymorphic toxin system, DSP-PTPase phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05130
malus_domestica	MD02G1261300.v1.1 MD04G1248500.v1.1 MD07G1059500.v1.1
prunus_persica	Prupe.2G067300_v2.0.a1
pyrus_communis	pycom02g22340 pycom07g04560 pycom07g04570
rosa_chinensis	RchiOBHm_Chr1g0331721
rosa_laevigata	RLG00000029719
rosa_multiflora	Rmu_co8516993.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318850
rosa_rugosa	Rorug01G0095900
rosa_samantha	Rh1AG119600 Rh1BG091200 Rh1CG114700 Rh1DG125100
rosa_wichuraiana	Rw1G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AccII	CGCG	2 cut(s)	53, 249
AciI	CCGC	4 cut(s)	247, 324, 461, 670
AdeI	CACNNNGTG	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	1 cut(s)	476
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	3 cut(s)	75, 128, 563
AluI	AGCT	3 cut(s)	75, 128, 563
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	1 cut(s)	256
Alw44I	GTGCAC	1 cut(s)	573
AoxI	GGCC	1 cut(s)	329
ApaLI	GTGCAC	1 cut(s)	573
ApeKI	GCWGC	3 cut(s)	38, 143, 467
AspLEI	GCGC	1 cut(s)	539
AsuHPI	GGTGA	2 cut(s)	371, 607
BaeGI	GKGCMC	1 cut(s)	577
BanII	GRGCYC	3 cut(s)	457, 511, 679
BauI	CACGAG	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	3 cut(s)	50, 130, 454
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	581
BisI	GCNGC	3 cut(s)	39, 144, 468
BlsI	GCNGC	3 cut(s)	40, 145, 469
Bme1390I	CCNGG	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	442, 474
BsaJI	CCNNGG	4 cut(s)	255, 306, 395, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	4 cut(s)	255, 306, 395, 541
BseGI	GGATG	2 cut(s)	148, 660
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	2 cut(s)	524, 609
BseNI	ACTGG	1 cut(s)	611
BseRI	GAGGAG	2 cut(s)	244, 447
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	3 cut(s)	50, 130, 454
Bsh1236I	CGCG	2 cut(s)	53, 249
BshFI	GGCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	577
BsiSI	CCGG	2 cut(s)	341, 464
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	1 cut(s)	256
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	2 cut(s)	418, 664
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	4 cut(s)	457, 511, 577, 679
BspACI	CCGC	4 cut(s)	247, 324, 461, 670
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	523, 610
BspFNI	CGCG	2 cut(s)	53, 249
BspLI	GGNNCC	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	611
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	4 cut(s)	255, 306, 395, 541
BssSI	CACGAG	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	88, 545
Bst6I	CTCTTC	1 cut(s)	678
BstC8I	GCNNGC	3 cut(s)	64, 465, 496
BstDEI	CTNAG	3 cut(s)	510, 618, 714
BstDSI	CCRYGG	1 cut(s)	541
BstEII	GGTNACC	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	148, 660
BstFNI	CGCG	2 cut(s)	53, 249
BstHHI	GCGC	1 cut(s)	539
BstMAI	GTCTC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 72, 337
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	66
BstPI	GGTNACC	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	577
BstUI	CGCG	2 cut(s)	53, 249
BstV1I	GCAGC	3 cut(s)	50, 130, 454
BstXI	CCANNNNNNTGG	2 cut(s)	175, 548
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	2 cut(s)	148, 660
BtsI	GCAGTG	2 cut(s)	532, 575
BtsIMutI	CAGTG	4 cut(s)	93, 294, 532, 575
Cac8I	GCNNGC	3 cut(s)	64, 465, 496
CfoI	GCGC	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	463
CseI	GACGC	1 cut(s)	238
CsiI	ACCWGGT	1 cut(s)	355
CviAII	CATG	6 cut(s)	8, 63, 169, 441, 548, 568
DdeI	CTNAG	3 cut(s)	510, 618, 714
DraIII	CACNNNGTG	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
EciI	GGCGGA	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	395
Eco24I	GRGCYC	3 cut(s)	457, 511, 679
Eco91I	GGTNACC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	3 cut(s)	457, 511, 679
ErhI	CCWWGG	1 cut(s)	395
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	6 cut(s)	11, 66, 172, 444, 551, 571
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	6 cut(s)	7, 62, 168, 440, 547, 567
FauI	CCCGC	1 cut(s)	317
Fnu4HI	GCNGC	3 cut(s)	39, 144, 468
FokI	GGATG	2 cut(s)	135, 667
FriOI	GRGCYC	3 cut(s)	457, 511, 679
Fsp4HI	GCNGC	3 cut(s)	39, 144, 468
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	3 cut(s)	39, 144, 468
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	2 cut(s)	341, 464
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	6 cut(s)	11, 66, 172, 444, 551, 571
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	2 cut(s)	341, 464
HphI	GGTGA	2 cut(s)	371, 607
Hpy166II	GTNNAC	2 cut(s)	532, 575
Hpy188I	TCNGA	4 cut(s)	24, 267, 307, 513
Hpy188III	TCNNGA	2 cut(s)	632, 680
Hpy8I	GTNNAC	2 cut(s)	532, 575
HpyAV	CCTTC	4 cut(s)	28, 173, 342, 720
HpyCH4III	ACNGT	2 cut(s)	88, 545
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	4 cut(s)	62, 274, 381, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 72, 337
HpyF3I	CTNAG	3 cut(s)	510, 618, 714
HpySE526I	ACGT	1 cut(s)	640
Hsp92II	CATG	6 cut(s)	11, 66, 172, 444, 551, 571
HspAI	GCGC	1 cut(s)	537
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	3 cut(s)	50, 130, 454
MabI	ACCWGGT	1 cut(s)	355
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	3 cut(s)	359, 409, 595
MboII	GAAGA	3 cut(s)	193, 327, 695
MhlI	GDGCHC	4 cut(s)	457, 511, 577, 679
MluCI	AATT	2 cut(s)	389, 627
MroNI	GCCGGC	1 cut(s)	463
MslI	CAYNNNNRTG	2 cut(s)	546, 653
MspI	CCGG	2 cut(s)	341, 464
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	2 cut(s)	418, 664
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	2 cut(s)	53, 249
MwoI	GCNNNNNNNGC	3 cut(s)	59, 72, 337
NaeI	GCCGGC	1 cut(s)	465
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	6 cut(s)	11, 66, 172, 444, 551, 571
NlaIV	GGNNCC	1 cut(s)	456
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	359, 595
NspI	RCATGY	1 cut(s)	66
PaeI	GCATGC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	637
PctI	GAATGC	2 cut(s)	418, 664
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	3 cut(s)	40, 145, 469
PsiI	TTATAA	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	355
PspEI	GGTNACC	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	456
RseI	CAYNNNNRTG	2 cut(s)	546, 653
SatI	GCNGC	3 cut(s)	39, 144, 468
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	4 cut(s)	457, 511, 577, 679
SetI	ASST	8 cut(s)	77, 130, 165, 272, 361, 411, 565, 643
SexAI	ACCWGGT	1 cut(s)	355
SmiMI	CAYNNNNRTG	2 cut(s)	546, 653
SphI	GCATGC	1 cut(s)	66
Sse9I	AATT	2 cut(s)	389, 627
SsiI	CCGC	4 cut(s)	247, 324, 461, 670
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	2 cut(s)	88, 545
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	1 cut(s)	631
TasI	AATT	2 cut(s)	389, 627
TfiI	GAWTC	1 cut(s)	476
TscAI	CASTG	4 cut(s)	93, 301, 539, 582
TseFI	GTSAC	2 cut(s)	359, 595
TseI	GCWGC	3 cut(s)	38, 143, 467
Tsp45I	GTSAC	2 cut(s)	359, 595
TspDTI	ATGAA	1 cut(s)	671
TspRI	CASTG	4 cut(s)	93, 301, 539, 582
VneI	GTGCAC	1 cut(s)	573
XceI	RCATGY	1 cut(s)	66
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.