Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013708

Physical Location & Seq

Genomic Coordinates Forward (+)

3913846 .. 3916612

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGGTGTTGGTATATCGGTTCTGATAGGGTTGAAGGCAACAGTATATTTCGTGTTGTTTGCATACCTCAGAAGCTCTGGTTTCACAGTGCTTTCGATACCATTTTTGTATGCCTCTATGGTTTCATTTTTGGTTTCACTTGCTGCTCTTCCATCCATAGACCTTCCCGTGCTGTTGGGGAAGAACTCAGATGGGACTTTCCCCATTTGGTCGATTATAATGTTCAGCCCCTATTTGTATTTCGTCCGCTTCTTCTCGGCATTGCGGAGGTTGCATAGTAGGGAGGCTCCTTACACTGAAATCTCCGAGGGTTTGTTCGTTGGCGGGTGGCCTTCTTCGCCGGATAAACTGCCGCCAGGTGACCCTGCCATTGTTGATTGCACTTGTGAATTTCCAAGGAATTCTGAGGTTTCAGGGCATTCTTATTTGTGTGTGCCAACATGGGACACGAGGGCTCCCCCGCCGGTTGCCATTGAATCTGCTGTCAAGTGGGCTTGCCGAAAAAGGGCTCAGAATAAGCCTGTTTTCGTCCACTGCGCCTACGGTCATGGGAGAAGTGTTGCTGTCATGTGTGCACTACTAGTTGCTCTTGGGGTGGCAGAGGACTGGAAAAATGCTGGGAAACTAATTCGAGAGAAACGCCCTTACATTAGGATGAATGCTCAACACCACAGGGCTCTGGAAGAGTGGTCAAAACATCGGTTATCTCCTTCTAAGAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSPc

Protein Analysis

242

Amino Acids

26.82

Weight (kDa)

9.44

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013708)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g05130
malus_domestica	MD02G1261300.v1.1 MD04G1248500.v1.1 MD07G1059500.v1.1
prunus_persica	Prupe.2G067300_v2.0.a1
pyrus_communis	pycom02g22340 pycom07g04560 pycom07g04570
rosa_chinensis	RchiOBHm_Chr1g0331721
rosa_laevigata	RLG00000029719
rosa_multiflora	Rmu_co8516993.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318850
rosa_rugosa	Rorug01G0095900
rosa_samantha	Rh1AG119600 Rh1BG091200 Rh1CG114700 Rh1DG125100
rosa_wichuraiana	Rw1G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AciI	CCGC	5 cut(s)	247, 265, 324, 353, 461
AcsI	RAATTY	2 cut(s)	389, 400
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	2 cut(s)	34, 476
AhlI	ACTAGT	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
Alw21I	GWGCWC	1 cut(s)	577
Alw44I	GTGCAC	1 cut(s)	573
AoxI	GGCC	1 cut(s)	329
ApaLI	GTGCAC	1 cut(s)	573
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	389, 400
AspLEI	GCGC	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	577
BanII	GRGCYC	3 cut(s)	457, 511, 679
BauI	CACGAG	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	2 cut(s)	160, 185
BciT130I	CCWGG	1 cut(s)	357
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	1 cut(s)	581
BisI	GCNGC	2 cut(s)	144, 353
BlsI	GCNGC	2 cut(s)	145, 354
Bme1390I	CCNGG	1 cut(s)	357
BmiI	GGNNCC	2 cut(s)	288, 456
BmrFI	CCNGG	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	306, 395
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	611
Bse3DI	GCAATG	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	306, 395
BseGI	GGATG	2 cut(s)	152, 660
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	4 cut(s)	82, 201, 396, 524
BseNI	ACTGG	1 cut(s)	611
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	1 cut(s)	130
BseYI	CCCAGC	1 cut(s)	617
BshFI	GGCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	577
BsiSI	CCGG	2 cut(s)	341, 464
BslFI	GGGAC	2 cut(s)	208, 458
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmFI	GGGAC	2 cut(s)	208, 458
BsmI	GAATGC	2 cut(s)	418, 664
BsnI	GGCC	1 cut(s)	331
Bsp1286I	GDGCHC	4 cut(s)	457, 511, 577, 679
BspACI	CCGC	5 cut(s)	247, 265, 324, 353, 461
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	4 cut(s)	81, 200, 397, 523
BspLI	GGNNCC	2 cut(s)	288, 456
BspQI	GCTCTTC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	611
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	306, 395
BssSI	CACGAG	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	3 cut(s)	43, 88, 545
Bst6I	CTCTTC	2 cut(s)	153, 678
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	5 cut(s)	68, 187, 405, 510, 714
BstEII	GGTNACC	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	152, 660
BstHHI	GCGC	1 cut(s)	539
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 337
BstNI	CCWGG	1 cut(s)	357
BstPI	GGTNACC	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	577
BstV1I	GCAGC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	152, 660
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	3 cut(s)	93, 294, 532
Cac8I	GCNNGC	1 cut(s)	496
CfoI	GCGC	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	463
CviAII	CATG	3 cut(s)	441, 548, 568
CviJI	RGCY	9 cut(s)	75, 228, 287, 331, 455, 494, 509, 520, 677
CviKI_1	RGCY	9 cut(s)	75, 228, 287, 331, 455, 494, 509, 520, 677
DdeI	CTNAG	5 cut(s)	68, 187, 405, 510, 714
Eam1104I	CTCTTC	2 cut(s)	153, 678
EarI	CTCTTC	2 cut(s)	153, 678
Eco130I	CCWWGG	1 cut(s)	395
Eco24I	GRGCYC	3 cut(s)	457, 511, 679
Eco91I	GGTNACC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	3 cut(s)	457, 511, 679
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	3 cut(s)	444, 551, 571
FaqI	GGGAC	2 cut(s)	208, 458
FatI	CATG	3 cut(s)	440, 547, 567
FauI	CCCGC	2 cut(s)	317, 468
Fnu4HI	GCNGC	2 cut(s)	144, 353
FokI	GGATG	2 cut(s)	139, 667
FriOI	GRGCYC	3 cut(s)	457, 511, 679
Fsp4HI	GCNGC	2 cut(s)	144, 353
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	2 cut(s)	144, 353
GsaI	CCCAGC	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	2 cut(s)	341, 464
HhaI	GCGC	1 cut(s)	539
Hin1II	CATG	3 cut(s)	444, 551, 571
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	2 cut(s)	341, 464
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	2 cut(s)	532, 575
Hpy188I	TCNGA	6 cut(s)	24, 71, 190, 307, 406, 513
Hpy188III	TCNNGA	2 cut(s)	632, 680
Hpy8I	GTNNAC	2 cut(s)	532, 575
HpyAV	CCTTC	4 cut(s)	28, 173, 342, 720
HpyCH4III	ACNGT	3 cut(s)	43, 88, 545
HpyCH4V	TGCA	4 cut(s)	62, 274, 381, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 337
HpyF3I	CTNAG	5 cut(s)	68, 187, 405, 510, 714
Hsp92II	CATG	3 cut(s)	444, 551, 571
HspAI	GCGC	1 cut(s)	537
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	2 cut(s)	292, 460
Lsp1109I	GCAGC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	581
MaeIII	GTNAC	1 cut(s)	359
MboII	GAAGA	5 cut(s)	140, 193, 244, 327, 695
MhlI	GDGCHC	4 cut(s)	457, 511, 577, 679
MluCI	AATT	4 cut(s)	389, 400, 627, 721
MnlI	CCTC	8 cut(s)	77, 124, 261, 277, 301, 400, 444, 595
MslI	CAYNNNNRTG	1 cut(s)	653
MspI	CCGG	2 cut(s)	341, 464
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	2 cut(s)	418, 664
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	271, 337
NlaIII	CATG	3 cut(s)	444, 551, 571
NlaIV	GGNNCC	2 cut(s)	288, 456
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	359
PciSI	GCTCTTC	1 cut(s)	153
PctI	GAATGC	2 cut(s)	418, 664
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	2 cut(s)	145, 354
PsiI	TTATAA	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	355
PspEI	GGTNACC	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	288, 456
RseI	CAYNNNNRTG	1 cut(s)	653
SapI	GCTCTTC	1 cut(s)	153
SatI	GCNGC	2 cut(s)	144, 353
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	4 cut(s)	457, 511, 577, 679
SetI	ASST	6 cut(s)	69, 77, 165, 272, 361, 411
SmiMI	CAYNNNNRTG	1 cut(s)	653
SpeI	ACTAGT	1 cut(s)	580
Sse9I	AATT	4 cut(s)	389, 400, 627, 721
SsiI	CCGC	5 cut(s)	247, 265, 324, 353, 461
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	3 cut(s)	43, 88, 545
TaqI	TCGA	3 cut(s)	95, 212, 631
TasI	AATT	4 cut(s)	389, 400, 627, 721
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	476
TscAI	CASTG	3 cut(s)	93, 301, 539
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	114, 671
TspRI	CASTG	3 cut(s)	93, 301, 539
VneI	GTGCAC	1 cut(s)	573
XapI	RAATTY	2 cut(s)	389, 400
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.