Prupe.2G067300_v2.0.a1

Dual specificity phosphatase, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013708
Physical Location & Seq
Reverse (-)
9472869 .. 9477355
4487 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G067300.1

Sequence Viewer

Length: 729 bp
ATGGGTGTCGGCCTATCAGTTCTGATAGGGTTGAAAGCAGCAGTGCTCTTCTTCTTCTTCGCAAACCTGAGAAGGTTAGGTTTCACTCTGCTATCAATTCCATTTTTGTATGGCTCTTTGGTATCCATGTTGGTTTCCTTAGCTTCTCACCCATCCATAGACCTTCCCATGCTGTTGGGCAAGAACCCAGATGGGAGTTTCCCAATTTGGTCAATCATTATGTTCAGCCCATATTTGTATTTTGTCCGATTCTTCTCGGCATTGCGAAGATTGCTCAGTGGAGAGGCTCCTTATAGTGAAATCTGCGAGGGTTTGTATGTCGGCGGATGGCCTTCTTCCCCTGATAAACTGCCACCAGATGACCCTGCCATTGTTGATTGCACCTGTGAGTTGCCAAGAAGGCCGGAGTTTTCAGGGCATTCTTATTTGTGTGTCCCGACATGGGACACAAGGGCTCCTCAGCCGGCCGCCATTGAATCCGCTGTCAAATGGGCTTGTCGAAAGAGGGACCAGAAAAGGCCTGTTTTGGTCCACTGTGCATACGGTCATGGAAGAAGTGTGGCTGTCATGTGTGCACTATTAGTTGCTCTTGGGGTGGCAGAGGATTGGAAAAACGCTGAGAAATTAATTCGAGAAAAGCGTCCTTACATTAGGATGAATGCTCTACACCGCAGGGCTCTGGAAGAGTGGTCAAAACATCGGTTGTCTCCTTCTCAGAAGAATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSPc

Protein Analysis

243

Amino Acids

27.11

Weight (kDa)

9.32

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013708)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05130
malus_domestica MD02G1261300.v1.1 MD04G1248500.v1.1 MD07G1059500.v1.1
prunus_persica Prupe.2G067300_v2.0.a1
pyrus_communis pycom02g22340 pycom07g04560 pycom07g04570
rosa_chinensis RchiOBHm_Chr1g0331721
rosa_laevigata RLG00000029719
rosa_multiflora Rmu_co8516993.1_g000001
rosa_roxburghii Rroxscaffold_4G00318850
rosa_rugosa Rorug01G0095900
rosa_samantha Rh1AG119600 Rh1BG091200 Rh1CG114700 Rh1DG125100
rosa_wichuraiana Rw1G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 324, 468, 480, 670
AcoI YGGCCR 1 cut(s) 465
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 2 cut(s) 34, 476
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw21I GWGCWC 2 cut(s) 48, 577
Alw26I GTCTC 1 cut(s) 711
Alw44I GTGCAC 1 cut(s) 573
AoxI GGCC 5 cut(s) 10, 329, 401, 465, 518
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 1 cut(s) 38
AseI ATTAAT 1 cut(s) 626
AspS9I GGNCC 2 cut(s) 508, 529
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 2 cut(s) 508, 529
BaeGI GKGCMC 1 cut(s) 577
BanII GRGCYC 2 cut(s) 457, 679
Bbv12I GWGCWC 2 cut(s) 48, 577
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 50
BccI CCATC 3 cut(s) 160, 185, 321
BciVI GTATCC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 711
BfuI GTATCC 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 400
BisI GCNGC 2 cut(s) 39, 468
BlsI GCNGC 2 cut(s) 40, 469
Bme18I GGWCC 2 cut(s) 508, 529
BmgT120I GGNCC 2 cut(s) 508, 529
BmiI GGNNCC 3 cut(s) 288, 456, 509
Bpu10I CCTNAGC 2 cut(s) 139, 459
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse118I RCCGGY 1 cut(s) 463
Bse3DI GCAATG 1 cut(s) 260
BseGI GGATG 3 cut(s) 152, 332, 660
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 5 cut(s) 59, 289, 473, 609, 728
BseRI GAGGAG 1 cut(s) 447
BseSI GKGCMC 1 cut(s) 577
BseX3I CGGCCG 1 cut(s) 465
BseXI GCAGC 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 5 cut(s) 12, 331, 403, 467, 520
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 2 cut(s) 48, 577
BsiSI CCGG 2 cut(s) 404, 464
BslFI GGGAC 3 cut(s) 419, 458, 521
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 1 cut(s) 711
BsmFI GGGAC 3 cut(s) 419, 458, 521
BsmI GAATGC 2 cut(s) 418, 664
BsnI GGCC 5 cut(s) 12, 331, 403, 467, 520
Bsp1286I GDGCHC 4 cut(s) 48, 457, 577, 679
BspACI CCGC 4 cut(s) 324, 468, 480, 670
BspANI GGCC 5 cut(s) 12, 331, 403, 467, 520
BspCNI CTCAG 5 cut(s) 60, 288, 472, 610, 727
BspLI GGNNCC 3 cut(s) 288, 456, 509
BspQI GCTCTTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 463
BssAI RCCGGY 1 cut(s) 463
Bst4CI ACNGT 2 cut(s) 536, 545
Bst6I CTCTTC 2 cut(s) 53, 678
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 6 cut(s) 68, 139, 275, 459, 618, 714
BstF5I GGATG 3 cut(s) 152, 332, 660
BstMAI GTCTC 1 cut(s) 711
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 2 cut(s) 271, 400
BstSLI GKGCMC 1 cut(s) 577
BstV1I GCAGC 1 cut(s) 50
BstXI CCANNNNNNTGG 1 cut(s) 175
BstZI CGGCCG 1 cut(s) 465
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 5 cut(s) 12, 331, 403, 467, 520
BtsCI GGATG 3 cut(s) 152, 332, 660
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 3 cut(s) 48, 283, 532
Cac8I GCNNGC 1 cut(s) 465
Cfr10I RCCGGY 1 cut(s) 463
Cfr13I GGNCC 2 cut(s) 508, 529
CseI GACGC 1 cut(s) 629
CviAII CATG 5 cut(s) 127, 169, 441, 548, 568
DdeI CTNAG 6 cut(s) 68, 139, 275, 459, 618, 714
EaeI YGGCCR 1 cut(s) 465
EagI CGGCCG 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 53, 678
EarI CTCTTC 2 cut(s) 53, 678
EciI GGCGGA 1 cut(s) 339
EclXI CGGCCG 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 520
Eco24I GRGCYC 2 cut(s) 457, 679
Eco47I GGWCC 2 cut(s) 508, 529
Eco52I CGGCCG 1 cut(s) 465
EcoT38I GRGCYC 2 cut(s) 457, 679
FaeI CATG 5 cut(s) 130, 172, 444, 551, 571
FaqI GGGAC 3 cut(s) 419, 458, 521
FatI CATG 5 cut(s) 126, 168, 440, 547, 567
Fnu4HI GCNGC 2 cut(s) 39, 468
FokI GGATG 3 cut(s) 139, 339, 667
FriOI GRGCYC 2 cut(s) 457, 679
Fsp4HI GCNGC 2 cut(s) 39, 468
GluI GCNGC 2 cut(s) 39, 468
HaeIII GGCC 5 cut(s) 12, 331, 403, 467, 520
HapII CCGG 2 cut(s) 404, 464
HgaI GACGC 1 cut(s) 629
Hin1II CATG 5 cut(s) 130, 172, 444, 551, 571
HinfI GANTC 2 cut(s) 249, 476
HpaII CCGG 2 cut(s) 404, 464
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 2 cut(s) 532, 575
Hpy188I TCNGA 3 cut(s) 24, 248, 717
Hpy188III TCNNGA 3 cut(s) 436, 632, 680
Hpy8I GTNNAC 2 cut(s) 532, 575
HpyAV CCTTC 5 cut(s) 66, 173, 342, 393, 720
HpyCH4III ACNGT 2 cut(s) 536, 545
HpyCH4V TGCA 3 cut(s) 381, 539, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 271, 400
HpyF3I CTNAG 6 cut(s) 68, 139, 275, 459, 618, 714
Hsp92II CATG 5 cut(s) 130, 172, 444, 551, 571
KroI GCCGGC 1 cut(s) 463
KroNI GCCGGC 1 cut(s) 465
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 2 cut(s) 292, 460
Lsp1109I GCAGC 1 cut(s) 50
MboII GAAGA 9 cut(s) 40, 43, 46, 49, 244, 279, 327, 564, 695
MhlI GDGCHC 4 cut(s) 48, 457, 577, 679
MluCI AATT 4 cut(s) 96, 204, 623, 627
MnlI CCTC 5 cut(s) 277, 301, 468, 498, 595
MroNI GCCGGC 1 cut(s) 463
MseI TTAA 1 cut(s) 626
MslI CAYNNNNRTG 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 2 cut(s) 404, 464
Mva1269I GAATGC 2 cut(s) 418, 664
MwoI GCNNNNNNNGC 2 cut(s) 271, 400
NaeI GCCGGC 1 cut(s) 465
NgoMIV GCCGGC 1 cut(s) 463
NlaIII CATG 5 cut(s) 130, 172, 444, 551, 571
NlaIV GGNNCC 3 cut(s) 288, 456, 509
NmeAIII GCCGAG 1 cut(s) 236
PceI AGGCCT 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 637
PctI GAATGC 2 cut(s) 418, 664
PdiI GCCGGC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 249, 476
PkrI GCNGC 2 cut(s) 40, 469
PshBI ATTAAT 1 cut(s) 626
PspN4I GGNNCC 3 cut(s) 288, 456, 509
PspPI GGNCC 2 cut(s) 508, 529
RseI CAYNNNNRTG 1 cut(s) 653
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 626
SatI GCNGC 2 cut(s) 39, 468
Sau96I GGNCC 2 cut(s) 508, 529
SduI GDGCHC 4 cut(s) 48, 457, 577, 679
SetI ASST 6 cut(s) 69, 77, 82, 145, 165, 386
SinI GGWCC 2 cut(s) 508, 529
SmiMI CAYNNNNRTG 1 cut(s) 653
Sse9I AATT 4 cut(s) 96, 204, 623, 627
SseBI AGGCCT 1 cut(s) 520
SsiI CCGC 4 cut(s) 324, 468, 480, 670
StuI AGGCCT 1 cut(s) 520
TaaI ACNGT 2 cut(s) 536, 545
TaqI TCGA 2 cut(s) 499, 631
TasI AATT 4 cut(s) 96, 204, 623, 627
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 2 cut(s) 249, 476
Tru1I TTAA 1 cut(s) 626
Tru9I TTAA 1 cut(s) 626
TscAI CASTG 3 cut(s) 48, 283, 539
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 671
TspRI CASTG 3 cut(s) 48, 283, 539
VneI GTGCAC 1 cut(s) 573
VpaK11BI GGWCC 2 cut(s) 508, 529
VspI ATTAAT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.