Rroxscaffold_4G00318850

Dual specificity phosphatase, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013708
Physical Location & Seq
Forward (+)
46296713 .. 46299934
3222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318850.1

Sequence Viewer

Length: 819 bp
ATGGGATTGGGTCTATCAGCTCTGATAGGGCTGAAAGCTGCTGTATTGCTGTGGTTGTTTGCATACCTGAGAAGCTTGGAATGGAGGGTGTTATCAATACCATTCTTATATGCGTCTTTGGTATCAATGTTAGTTTCAGTTGCTTCTCACCCGTCCATAAACCTTCCGATGCTGTTGGGCAAGAGTTCAGACGGGAGTTTCCCCATTTGGTCGATCATCATGTTCAGCCCTTACTTGTATTTCGTCCGCCTTTTCTCGGCACTGCGAAGATTACGCAGTGGTGAACCTCCCTACAGTCAAGTCTGTGAGGGTTTATATGTTGGTGGATGGCCTTCTTCACCCGATAAGCTGCCTCCCGGTAACCCTGCCATTATCGACTGCACTTGTGAATTGCCCAGAGGTTGTTGGTCAGAGCAGAGTTATCTCTGCGTCCCAACATGGGATACAAGGTCTCCTCACCCCTCTCAGATTGAATCCGCTGTCAAGTGGGCTTCCAGAAAGAGGGGAGCAAAACAGGCCCCCGTTTTTCGTTCACTGCGCATACGGAGGAGCGATTCCACCATAGCTGTTGAGAAGTCCATTCTGTGGTCTTATTTGTGTCCATGGGGAAAGGGAGGTCATGGAAGAAGTGTGGCTGTTATGTGTGCATTATTAGTTGCTCTTGGCATGGCAGAGGATTGGAAAACTGCTGAGAAATTAATTCGGGAAAGACGTCCTTACATTAGAATGAATTCTCTACACCGCAAGGCTCTAGAAGAGTGGTCAAAACATCGGTTATCTCCTTCTACGAAGAGTGGAGAACTGAATACTACTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSPc

Protein Analysis

272

Amino Acids

30.51

Weight (kDa)

9.8

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013708)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05130
malus_domestica MD02G1261300.v1.1 MD04G1248500.v1.1 MD07G1059500.v1.1
prunus_persica Prupe.2G067300_v2.0.a1
pyrus_communis pycom02g22340 pycom07g04560 pycom07g04570
rosa_chinensis RchiOBHm_Chr1g0331721
rosa_laevigata RLG00000029719
rosa_multiflora Rmu_co8516993.1_g000001
rosa_roxburghii Rroxscaffold_4G00318850
rosa_rugosa Rorug01G0095900
rosa_samantha Rh1AG119600 Rh1BG091200 Rh1CG114700 Rh1DG125100
rosa_wichuraiana Rw1G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 715
Acc16I TGCGCA 1 cut(s) 539
AccB7I CCANNNNNTGG 1 cut(s) 585
AciI CCGC 3 cut(s) 247, 477, 742
AcsI RAATTY 1 cut(s) 730
AcyI GRCGYC 1 cut(s) 712
AfiI CCNNNNNNNGG 4 cut(s) 256, 439, 501, 585
AgsI TTSAA 1 cut(s) 473
AluBI AGCT 5 cut(s) 20, 38, 75, 349, 566
AluI AGCT 5 cut(s) 20, 38, 75, 349, 566
Alw26I GTCTC 1 cut(s) 456
AoxI GGCC 2 cut(s) 329, 516
ApeKI GCWGC 2 cut(s) 38, 349
ApoI RAATTY 1 cut(s) 730
AseI ATTAAT 1 cut(s) 698
Asp700I GAANNNNTTC 1 cut(s) 730
AspLEI GCGC 1 cut(s) 540
AspS9I GGNCC 1 cut(s) 517
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 4 cut(s) 140, 293, 330, 449
BbvI GCAGC 2 cut(s) 25, 336
BccI CCATC 1 cut(s) 321
BciVI GTATCC 1 cut(s) 436
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 1 cut(s) 752
BfmI CTRYAG 1 cut(s) 292
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 2 cut(s) 39, 350
BlsI GCNGC 2 cut(s) 40, 351
Bme1390I CCNGG 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 517
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 712
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 602
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 439, 501, 585
BseDI CCNNGG 1 cut(s) 602
BseGI GGATG 1 cut(s) 332
BseLI CCNNNNNNNGG 4 cut(s) 256, 439, 501, 585
BseMII CTCAG 3 cut(s) 59, 479, 681
BseRI GAGGAG 2 cut(s) 444, 562
BseXI GCAGC 2 cut(s) 25, 336
BsgI GTGCAG 1 cut(s) 364
BshFI GGCC 2 cut(s) 331, 518
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 4 cut(s) 256, 439, 501, 585
BsmAI GTCTC 1 cut(s) 456
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 2 cut(s) 331, 518
Bso31I GGTCTC 1 cut(s) 456
Bsp143I GATC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 602
BspACI CCGC 3 cut(s) 247, 477, 742
BspANI GGCC 2 cut(s) 331, 518
BspCNI CTCAG 3 cut(s) 60, 478, 682
BspLI GGNNCC 1 cut(s) 519
BspTNI GGTCTC 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 602
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 712
BssT1I CCWWGG 1 cut(s) 602
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 2 cut(s) 750, 785
BstACI GRCGYC 1 cut(s) 712
BstDEI CTNAG 4 cut(s) 68, 465, 690, 813
BstDSI CCRYGG 1 cut(s) 602
BstEII GGTNACC 1 cut(s) 359
BstF5I GGATG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstPI GGTNACC 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 25, 336
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 2 cut(s) 331, 518
BtgI CCRYGG 1 cut(s) 602
BtsCI GGATG 1 cut(s) 332
BtsI GCAGTG 3 cut(s) 260, 283, 533
BtsIMutI CAGTG 3 cut(s) 260, 283, 533
CfoI GCGC 1 cut(s) 540
Cfr13I GGNCC 1 cut(s) 517
CseI GACGC 2 cut(s) 102, 418
CviAII CATG 5 cut(s) 220, 438, 603, 620, 667
DdeI CTNAG 4 cut(s) 68, 465, 690, 813
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 2 cut(s) 750, 785
EarI CTCTTC 2 cut(s) 750, 785
EciI GGCGGA 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 602
Eco31I GGTCTC 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 730
EcoT14I CCWWGG 1 cut(s) 602
ErhI CCWWGG 1 cut(s) 602
FaeI CATG 5 cut(s) 223, 441, 606, 623, 670
FalI AAGNNNNNCTT 2 cut(s) 700, 732
FaqI GGGAC 1 cut(s) 416
FatI CATG 5 cut(s) 219, 437, 602, 619, 666
Fnu4HI GCNGC 2 cut(s) 39, 350
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 2 cut(s) 39, 350
FspBI CTAG 1 cut(s) 752
FspI TGCGCA 1 cut(s) 539
GlaI GCGC 1 cut(s) 539
GluI GCNGC 2 cut(s) 39, 350
HaeIII GGCC 2 cut(s) 331, 518
HapII CCGG 1 cut(s) 357
HgaI GACGC 2 cut(s) 102, 418
HhaI GCGC 1 cut(s) 540
Hin1I GRCGYC 1 cut(s) 712
Hin1II CATG 5 cut(s) 223, 441, 606, 623, 670
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 2 cut(s) 473, 554
HpaII CCGG 1 cut(s) 357
HphI GGTGA 4 cut(s) 140, 293, 330, 449
Hpy166II GTNNAC 2 cut(s) 284, 533
Hpy188I TCNGA 5 cut(s) 24, 168, 190, 412, 468
Hpy188III TCNNGA 3 cut(s) 495, 704, 752
Hpy8I GTNNAC 2 cut(s) 284, 533
HpyAV CCTTC 3 cut(s) 173, 342, 792
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 3 cut(s) 62, 381, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 4 cut(s) 68, 465, 690, 813
HpySE526I ACGT 1 cut(s) 712
Hsp92I GRCGYC 1 cut(s) 712
Hsp92II CATG 5 cut(s) 223, 441, 606, 623, 670
HspAI GCGC 1 cut(s) 538
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 2 cut(s) 506, 549
LpnPI CCDG 6 cut(s) 80, 370, 378, 409, 500, 508
Lsp1109I GCAGC 2 cut(s) 25, 336
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 752
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 1 cut(s) 359
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 5 cut(s) 279, 327, 636, 767, 802
MluCI AATT 4 cut(s) 389, 695, 699, 730
MroXI GAANNNNTTC 1 cut(s) 730
MseI TTAA 1 cut(s) 698
MslI CAYNNNNRTG 1 cut(s) 725
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 515
NciI CCSGG 1 cut(s) 357
NcoI CCATGG 1 cut(s) 602
NdeII GATC 1 cut(s) 213
NlaIII CATG 5 cut(s) 223, 441, 606, 623, 670
NlaIV GGNNCC 1 cut(s) 519
NmeAIII GCCGAG 1 cut(s) 236
NsbI TGCGCA 1 cut(s) 539
PcsI WCGNNNNNNNCGW 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 730
PfeI GAWTC 2 cut(s) 473, 554
PflMI CCANNNNNTGG 1 cut(s) 585
PkrI GCNGC 2 cut(s) 40, 351
PshBI ATTAAT 1 cut(s) 698
PspEI GGTNACC 1 cut(s) 359
PspN4I GGNNCC 1 cut(s) 519
PspPI GGNCC 1 cut(s) 517
RseI CAYNNNNRTG 1 cut(s) 725
SaqAI TTAA 1 cut(s) 698
SatI GCNGC 2 cut(s) 39, 350
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 517
ScrFI CCNGG 1 cut(s) 357
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 725
Sse9I AATT 4 cut(s) 389, 695, 699, 730
SsiI CCGC 3 cut(s) 247, 477, 742
SspMI CTAG 1 cut(s) 752
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 715
TaqI TCGA 2 cut(s) 212, 375
TasI AATT 4 cut(s) 389, 695, 699, 730
TfiI GAWTC 2 cut(s) 473, 554
Tru1I TTAA 1 cut(s) 698
Tru9I TTAA 1 cut(s) 698
TscAI CASTG 3 cut(s) 267, 283, 540
TseI GCWGC 2 cut(s) 38, 349
TspDTI ATGAA 1 cut(s) 743
TspGWI ACGGA 1 cut(s) 559
TspRI CASTG 3 cut(s) 267, 283, 540
Van91I CCANNNNNTGG 1 cut(s) 585
VspI ATTAAT 1 cut(s) 698
XapI RAATTY 1 cut(s) 730
XbaI TCTAGA 1 cut(s) 751
XmnI GAANNNNTTC 1 cut(s) 730
XspI CTAG 1 cut(s) 752
ZraI GACGTC 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.