Rmu_co8516993.1_g000001

Dual specificity phosphatase, catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8516993.1
OG0013708
Physical Location & Seq
Forward (+)
454 .. 3266
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8516993.1_g000001.1.cds

Sequence Viewer

Length: 744 bp
atgggattgggtctatcagttctgatagggctgaaagctgctgtattgctgtggttgtttgcatacctgagaagcttggaatggagggtgttatcaataccattcttatatgcgtctttggtatcaatgttagtttcagttgcttctcacccgtccataaacctaccgatgctgttgggcaagagttcagacgggagtttccccatttggtcgatcatcatgttcagcccttatttgtatttcgtccgccttttctcggcactgcgaagattacgcagtggtgaacctccctacagtcaagtctgtgagggtttgtatgttggtggatggccttcttcgccggataagctgcctcccggtaaccctgccattatcgactgcacttgtgaattgcccagaggttgttggtcagagcagagttatctctgcgtcccaacatgggatacaaggtctcctcacccctctcagattgaatccgctgtcaagtgggcttccagaaagagggagcaaaacaggcccgttttcgttcactgcgcatacggtcatggaagaagtgtggctgttatgtgtgcattattagttgctcttggcatggcagaggattggaaaactgctgagaaattaattcgggaaagacgtccttacattagaatgaattctctacaccgcaaggctctagaagagtggtcaaaacatcggttatctccttctaagaagagtggagaactgaatactaccaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSPc

Protein Analysis

247

Amino Acids

27.85

Weight (kDa)

9.55

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013708)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g05130
malus_domestica MD02G1261300.v1.1 MD04G1248500.v1.1 MD07G1059500.v1.1
prunus_persica Prupe.2G067300_v2.0.a1
pyrus_communis pycom02g22340 pycom07g04560 pycom07g04570
rosa_chinensis RchiOBHm_Chr1g0331721
rosa_laevigata RLG00000029719
rosa_multiflora Rmu_co8516993.1_g000001
rosa_roxburghii Rroxscaffold_4G00318850
rosa_rugosa Rorug01G0095900
rosa_samantha Rh1AG119600 Rh1BG091200 Rh1CG114700 Rh1DG125100
rosa_wichuraiana Rw1G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 640
Acc16I TGCGCA 1 cut(s) 535
AciI CCGC 3 cut(s) 247, 477, 667
AcsI RAATTY 1 cut(s) 655
AcyI GRCGYC 1 cut(s) 637
AfiI CCNNNNNNNGG 3 cut(s) 256, 439, 501
AgsI TTSAA 1 cut(s) 473
AluBI AGCT 3 cut(s) 38, 75, 349
AluI AGCT 3 cut(s) 38, 75, 349
Alw26I GTCTC 1 cut(s) 456
AoxI GGCC 2 cut(s) 329, 515
ApeKI GCWGC 2 cut(s) 38, 349
ApoI RAATTY 1 cut(s) 655
AseI ATTAAT 1 cut(s) 623
Asp700I GAANNNNTTC 1 cut(s) 655
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 516
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 3 cut(s) 140, 293, 449
BbvI GCAGC 2 cut(s) 25, 336
BccI CCATC 1 cut(s) 321
BciVI GTATCC 1 cut(s) 436
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 1 cut(s) 677
BfmI CTRYAG 1 cut(s) 292
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 2 cut(s) 39, 350
BlsI GCNGC 2 cut(s) 40, 351
Bme1390I CCNGG 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 516
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 637
BsaI GGTCTC 1 cut(s) 456
BsaXI ACNNNNNCTCC 2 cut(s) 436, 466
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 439, 501
BseGI GGATG 1 cut(s) 332
BseLI CCNNNNNNNGG 3 cut(s) 256, 439, 501
BseMII CTCAG 3 cut(s) 59, 479, 606
BseRI GAGGAG 1 cut(s) 444
BseXI GCAGC 2 cut(s) 25, 336
BsgI GTGCAG 1 cut(s) 364
BshFI GGCC 2 cut(s) 331, 517
BsiSI CCGG 2 cut(s) 341, 357
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 3 cut(s) 256, 439, 501
BsmAI GTCTC 1 cut(s) 456
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 2 cut(s) 331, 517
Bso31I GGTCTC 1 cut(s) 456
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 3 cut(s) 247, 477, 667
BspANI GGCC 2 cut(s) 331, 517
BspCNI CTCAG 3 cut(s) 60, 478, 607
BspTNI GGTCTC 1 cut(s) 456
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 637
Bst4CI ACNGT 2 cut(s) 296, 542
Bst6I CTCTTC 2 cut(s) 675, 710
BstACI GRCGYC 1 cut(s) 637
BstDEI CTNAG 4 cut(s) 68, 465, 615, 711
BstEII GGTNACC 1 cut(s) 359
BstF5I GGATG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 3 cut(s) 337, 346, 514
BstPI GGTNACC 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 25, 336
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 2 cut(s) 331, 517
BtsCI GGATG 1 cut(s) 332
BtsI GCAGTG 3 cut(s) 260, 283, 529
BtsIMutI CAGTG 3 cut(s) 260, 283, 529
CfoI GCGC 1 cut(s) 536
Cfr13I GGNCC 1 cut(s) 516
CseI GACGC 2 cut(s) 102, 418
CviAII CATG 4 cut(s) 220, 438, 545, 592
DdeI CTNAG 4 cut(s) 68, 465, 615, 711
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 2 cut(s) 675, 710
EarI CTCTTC 2 cut(s) 675, 710
EciI GGCGGA 1 cut(s) 236
Eco31I GGTCTC 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 359
EcoO65I GGTNACC 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 655
FaeI CATG 4 cut(s) 223, 441, 548, 595
FalI AAGNNNNNCTT 2 cut(s) 625, 657
FaqI GGGAC 1 cut(s) 416
FatI CATG 4 cut(s) 219, 437, 544, 591
Fnu4HI GCNGC 2 cut(s) 39, 350
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 2 cut(s) 39, 350
FspBI CTAG 1 cut(s) 677
FspI TGCGCA 1 cut(s) 535
GlaI GCGC 1 cut(s) 535
GluI GCNGC 2 cut(s) 39, 350
HaeIII GGCC 2 cut(s) 331, 517
HapII CCGG 2 cut(s) 341, 357
HgaI GACGC 2 cut(s) 102, 418
HhaI GCGC 1 cut(s) 536
Hin1I GRCGYC 1 cut(s) 637
Hin1II CATG 4 cut(s) 223, 441, 548, 595
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 1 cut(s) 473
HpaII CCGG 2 cut(s) 341, 357
HphI GGTGA 3 cut(s) 140, 293, 449
Hpy166II GTNNAC 2 cut(s) 284, 529
Hpy188I TCNGA 4 cut(s) 24, 190, 412, 468
Hpy188III TCNNGA 3 cut(s) 495, 629, 677
Hpy8I GTNNAC 2 cut(s) 284, 529
HpyAV CCTTC 2 cut(s) 342, 717
HpyCH4III ACNGT 2 cut(s) 296, 542
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 3 cut(s) 62, 381, 572
HpyF10VI GCNNNNNNNGC 3 cut(s) 337, 346, 514
HpyF3I CTNAG 4 cut(s) 68, 465, 615, 711
HpySE526I ACGT 1 cut(s) 637
Hsp92I GRCGYC 1 cut(s) 637
Hsp92II CATG 4 cut(s) 223, 441, 548, 595
HspAI GCGC 1 cut(s) 534
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 505
LpnPI CCDG 7 cut(s) 80, 354, 370, 378, 409, 499, 508
Lsp1109I GCAGC 2 cut(s) 25, 336
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 677
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 1 cut(s) 359
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 5 cut(s) 279, 327, 561, 692, 727
MluCI AATT 4 cut(s) 389, 620, 624, 655
MnlI CCTC 9 cut(s) 78, 297, 301, 363, 392, 465, 472, 495, 592
MroXI GAANNNNTTC 1 cut(s) 655
MseI TTAA 1 cut(s) 623
MslI CAYNNNNRTG 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 341, 357
MspR9I CCNGG 1 cut(s) 357
MwoI GCNNNNNNNGC 3 cut(s) 337, 346, 514
NciI CCSGG 1 cut(s) 357
NdeII GATC 1 cut(s) 213
NlaIII CATG 4 cut(s) 223, 441, 548, 595
NmeAIII GCCGAG 1 cut(s) 236
NsbI TGCGCA 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 634
PdmI GAANNNNTTC 1 cut(s) 655
PfeI GAWTC 1 cut(s) 473
PkrI GCNGC 2 cut(s) 40, 351
PshBI ATTAAT 1 cut(s) 623
PspEI GGTNACC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 516
RseI CAYNNNNRTG 1 cut(s) 650
SaqAI TTAA 1 cut(s) 623
SatI GCNGC 2 cut(s) 39, 350
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 516
ScrFI CCNGG 1 cut(s) 357
SetI ASST 9 cut(s) 40, 69, 77, 165, 289, 351, 403, 452, 640
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 650
Sse9I AATT 4 cut(s) 389, 620, 624, 655
SsiI CCGC 3 cut(s) 247, 477, 667
SspMI CTAG 1 cut(s) 677
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 296, 542
TaiI ACGT 1 cut(s) 640
TaqI TCGA 2 cut(s) 212, 375
TasI AATT 4 cut(s) 389, 620, 624, 655
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 1 cut(s) 623
Tru9I TTAA 1 cut(s) 623
TscAI CASTG 3 cut(s) 267, 283, 536
TseI GCWGC 2 cut(s) 38, 349
TspDTI ATGAA 1 cut(s) 668
TspRI CASTG 3 cut(s) 267, 283, 536
VspI ATTAAT 1 cut(s) 623
XapI RAATTY 1 cut(s) 655
XbaI TCTAGA 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 655
XspI CTAG 1 cut(s) 677
ZraI GACGTC 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.