Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003142

Physical Location & Seq

Genomic Coordinates Forward (+)

5853087 .. 5855414

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05580.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTGGATCGTCTTTTCGAGGACATATTTGAGGTCCTGCGATTGAACCCAGATGGCAAAAAGTTCGATAAAGTAACCCGAGTTGAAGCAAAGAGTGAGACTTGCGACATGTTCATGCACCTTGACGTGAATTCCGAGGTGTACCCCATCAAAGAAGGCGAGAAATTCTCCATGGCTCTCACCTCTACCCTCAATCTTGATGGCACCCCTGACTCTGGCTATTTCACCCCGGGAAATCGCAAGACATTGGCTGATGAATATGAATATGTCATGCAAGGGAAACTTTACAAAATTTCAGAAGGCTCTAAACGTGATCCTAAAGCGGAGGTAAATGCTTCATTTGGTGGCCTTCTAATGATGCTGAAGGGGGAATCCGCTCAATTCAAGAACTTTGAACTTGATCAGAGGTTGTTTCTCCTGATTAGGAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb8

Protein Analysis

145

Amino Acids

16.51

Weight (kDa)

5.3

Isoelectric Point (pI)

13.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb8	PF03870	7 - 76	2.3e-23	RNA polymerase Rpb8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54250 AT3G59600
fragaria_vesca	FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580
malus_domestica	MD03G1174900.v1.1 MD04G1053300.v1.1 MD05G1057600.v1.1 MD11G1193000.v1.1
prunus_persica	Prupe.4G249600_v2.0.a1 Prupe.4G249600_v2.0.a1
pyrus_communis	pycom03g13240 pycom11g16850
rosa_chinensis	RchiOBHm_Chr1g0332731 RchiOBHm_Chr5g0052071 RchiOBHm_Chr6g0273601
rosa_laevigata	RLG00000034845
rosa_multiflora	Rmu_sc0001587.1_g000001 Rmu_sc0032204.1_g000001 Rmu_ssc0000098.1_g000004
rosa_roxburghii	Rroxscaffold_1G00027860 Rroxscaffold_4G00318050
rosa_rugosa	Rorug01G0104600 Rorug05G0275000 Rorug05G0275100
rosa_samantha	Rh1AG127600 Rh1BG097000 Rh1CG121400 Rh5BG358000 Rh5CG383500 Rh5DG373400 Rh6CG194200
rosa_wichuraiana	Rw5G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccBSI	CCGCTC	1 cut(s)	377
AciI	CCGC	2 cut(s)	323, 375
AclWI	GGATC	2 cut(s)	15, 308
AcsI	RAATTY	3 cut(s)	130, 164, 291
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	46, 86, 385, 395
AjiI	CACGTC	1 cut(s)	127
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	15, 308
Ama87I	CYCGRG	2 cut(s)	78, 229
AoxI	GGCC	1 cut(s)	346
ApoI	RAATTY	3 cut(s)	130, 164, 291
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	2 cut(s)	230, 231
AsuHPI	GGTGA	2 cut(s)	172, 217
AvaI	CYCGRG	2 cut(s)	78, 229
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	203
BccI	CCATC	3 cut(s)	47, 155, 194
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	230, 231
BcoDI	GTCTC	1 cut(s)	92
Bme1390I	CCNGG	2 cut(s)	230, 231
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	2 cut(s)	78, 229
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	230, 231
BmsI	GCATC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpuMI	CCSGG	2 cut(s)	230, 231
BsaJI	CCNNGG	4 cut(s)	135, 171, 228, 229
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
BseDI	CCNNGG	4 cut(s)	135, 171, 228, 229
BseLI	CCNNNNNNNGG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	1 cut(s)	203
BsiHKCI	CYCGRG	2 cut(s)	78, 229
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	348
BsoBI	CYCGRG	2 cut(s)	78, 229
Bsp143I	GATC	3 cut(s)	7, 313, 400
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	2 cut(s)	323, 375
BspANI	GGCC	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	205
BspPI	GGATC	2 cut(s)	15, 308
BspT107I	GGYRCC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	377
BssECI	CCNNGG	4 cut(s)	135, 171, 228, 229
BssMI	GATC	3 cut(s)	7, 313, 400
BssT1I	CCWWGG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	171
BstKTI	GATC	3 cut(s)	10, 316, 403
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	3 cut(s)	7, 313, 400
BstNSI	RCATGY	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	228, 229
BsuRI	GGCC	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	34
Cfr9I	CCCGGG	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	4 cut(s)	109, 115, 172, 271
CviJI	RGCY	6 cut(s)	176, 219, 251, 303, 348, 430
CviKI_1	RGCY	6 cut(s)	176, 219, 251, 303, 348, 430
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	3 cut(s)	9, 315, 402
DpnII	GATC	3 cut(s)	7, 313, 400
Eco130I	CCWWGG	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	383
Eco88I	CYCGRG	2 cut(s)	78, 229
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	4 cut(s)	112, 118, 175, 274
FaiI	YATR	7 cut(s)	26, 110, 116, 173, 261, 267, 272
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FatI	CATG	4 cut(s)	108, 114, 171, 270
FbaI	TGATCA	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	4 cut(s)	112, 118, 175, 274
HinfI	GANTC	2 cut(s)	212, 371
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	172, 217
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	136, 298, 405
Hpy188III	TCNNGA	3 cut(s)	197, 385, 418
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	149, 293, 358, 359
HpyCH4IV	ACGT	2 cut(s)	126, 310
HpyCH4V	TGCA	2 cut(s)	118, 274
HpySE526I	ACGT	2 cut(s)	126, 310
Hsp92II	CATG	4 cut(s)	112, 118, 175, 274
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	7, 313, 400
LpnPI	CCDG	6 cut(s)	50, 63, 201, 222, 243, 431
LweI	GCATC	1 cut(s)	348
MaeII	ACGT	2 cut(s)	126, 310
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	3 cut(s)	9, 315, 402
MbiI	CCGCTC	1 cut(s)	377
MboI	GATC	3 cut(s)	7, 313, 400
MluCI	AATT	4 cut(s)	130, 164, 291, 380
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	7 cut(s)	13, 25, 130, 193, 200, 319, 399
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	230, 231
NciI	CCSGG	2 cut(s)	230, 231
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	3 cut(s)	7, 313, 400
NlaIII	CATG	4 cut(s)	112, 118, 175, 274
NlaIV	GGNNCC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	112
PciI	ACATGT	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	371
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PpuMI	RGGWCCY	1 cut(s)	34
PscI	ACATGT	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	34
PspPPI	RGGWCCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	113
Sau3AI	GATC	3 cut(s)	7, 313, 400
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	230, 231
SetI	ASST	9 cut(s)	36, 123, 129, 141, 185, 313, 330, 410, 432
SfaNI	GCATC	1 cut(s)	348
SinI	GGWCC	1 cut(s)	34
SmaI	CCCGGG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	4 cut(s)	130, 164, 291, 380
SsiI	CCGC	2 cut(s)	323, 375
StyD4I	CCNGG	2 cut(s)	228, 229
StyI	CCWWGG	1 cut(s)	171
TaiI	ACGT	2 cut(s)	129, 313
TaqI	TCGA	2 cut(s)	18, 66
TasI	AATT	4 cut(s)	130, 164, 291, 380
TfiI	GAWTC	1 cut(s)	371
TspDTI	ATGAA	4 cut(s)	103, 270, 276, 327
TspMI	CCCGGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	3 cut(s)	130, 164, 291
XceI	RCATGY	1 cut(s)	112
XmaI	CCCGGG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.