Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003142

Physical Location & Seq

Genomic Coordinates Reverse (-)

31084278 .. 31084553

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0275100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGATGATAACATATTCCCGGAGCCATCTAAGTTTGATCCAAGTAGGTTCGACAAGCAAGCAACAGTTCCACCCTACTGCTTTGTACCATTTGGAGGGGGACCTAGAATATGTCCAGGATATGAGGTTGCCAGGATCGAAACCCTAATTGCAATACACCATATGGTAACTCAATTCACTTGGAAGCTATGTGCAGACAATCACTTCAGTAGGGATCTAATGCCTGTACCTACTCAAGGACTGCCCATTGAAATCACGCCTAGAATTCTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb8

Protein Analysis

91

Amino Acids

10.34

Weight (kDa)

5.81

Isoelectric Point (pI)

61.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 69	1.3e-19	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54250 AT3G59600
fragaria_vesca	FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580
malus_domestica	MD03G1174900.v1.1 MD04G1053300.v1.1 MD05G1057600.v1.1 MD11G1193000.v1.1
prunus_persica	Prupe.4G249600_v2.0.a1 Prupe.4G249600_v2.0.a1
pyrus_communis	pycom03g13240 pycom11g16850
rosa_chinensis	RchiOBHm_Chr1g0332731 RchiOBHm_Chr5g0052071 RchiOBHm_Chr6g0273601
rosa_laevigata	RLG00000034845
rosa_multiflora	Rmu_sc0001587.1_g000001 Rmu_sc0032204.1_g000001 Rmu_ssc0000098.1_g000004
rosa_roxburghii	Rroxscaffold_1G00027860 Rroxscaffold_4G00318050
rosa_rugosa	Rorug01G0104600 Rorug05G0275000 Rorug05G0275100
rosa_samantha	Rh1AG127600 Rh1BG097000 Rh1CG121400 Rh5BG358000 Rh5CG383500 Rh5DG373400 Rh6CG194200
rosa_wichuraiana	Rw5G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	32, 143, 222
AcsI	RAATTY	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	190
AfaI	GTAC	2 cut(s)	87, 228
AfiI	CCNNNNNNNGG	2 cut(s)	95, 236
AgsI	TTSAA	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	115, 131
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
AlwI	GGATC	3 cut(s)	32, 143, 222
ApoI	RAATTY	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	101
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	117, 133
BcnI	CCSGG	1 cut(s)	20
BfaI	CTAG	2 cut(s)	105, 261
Bme1390I	CCNGG	3 cut(s)	20, 117, 133
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	24, 102
BmrFI	CCNGG	3 cut(s)	20, 117, 133
BpuEI	CTTGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 236
BseBI	CCWGG	2 cut(s)	117, 133
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	95, 236
BsgI	GTGCAG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	2 cut(s)	95, 236
BsmFI	GGGAC	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	37, 135, 214
BspLI	GGNNCC	2 cut(s)	24, 102
BspPI	GGATC	3 cut(s)	32, 143, 222
BssMI	GATC	3 cut(s)	37, 135, 214
Bst2UI	CCWGG	2 cut(s)	117, 133
Bst4CI	ACNGT	2 cut(s)	67, 273
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	30
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	3 cut(s)	40, 138, 217
BstMBI	GATC	3 cut(s)	37, 135, 214
BstNI	CCWGG	2 cut(s)	117, 133
BstSCI	CCNGG	3 cut(s)	18, 115, 131
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	86, 227
CviJI	RGCY	2 cut(s)	25, 187
CviKI_1	RGCY	2 cut(s)	25, 187
CviQI	GTAC	2 cut(s)	86, 227
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	3 cut(s)	39, 137, 216
DpnII	GATC	3 cut(s)	37, 135, 214
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	190
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	115, 131
FaiI	YATR	6 cut(s)	14, 112, 123, 162, 164, 190
FaqI	GGGAC	1 cut(s)	114
FauNDI	CATATG	1 cut(s)	162
FokI	GGATG	1 cut(s)	17
FspBI	CTAG	2 cut(s)	105, 261
HapII	CCGG	1 cut(s)	20
HpaII	CCGG	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	67, 273
HpyCH4V	TGCA	2 cut(s)	152, 194
HpyF3I	CTNAG	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	37, 135, 214
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	6 cut(s)	33, 102, 118, 129, 145, 237
MaeI	CTAG	2 cut(s)	105, 261
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	3 cut(s)	39, 137, 216
MboI	GATC	3 cut(s)	37, 135, 214
MflI	RGATCY	1 cut(s)	214
MluCI	AATT	3 cut(s)	147, 173, 264
MnlI	CCTC	2 cut(s)	89, 118
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	3 cut(s)	20, 117, 133
MvaI	CCWGG	2 cut(s)	117, 133
NciI	CCSGG	1 cut(s)	20
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	3 cut(s)	37, 135, 214
NlaIV	GGNNCC	2 cut(s)	24, 102
PfoI	TCCNGGA	2 cut(s)	18, 115
PpuMI	RGGWCCY	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	115, 131
PspGI	CCWGG	2 cut(s)	115, 131
PspN4I	GGNNCC	2 cut(s)	24, 102
PspPI	GGNCC	1 cut(s)	101
PspPPI	RGGWCCY	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	2 cut(s)	87, 228
RsaNI	GTAC	2 cut(s)	86, 227
Sau3AI	GATC	3 cut(s)	37, 135, 214
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	3 cut(s)	20, 117, 133
SetI	ASST	5 cut(s)	50, 106, 129, 189, 232
SinI	GGWCC	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	3 cut(s)	147, 173, 264
SspMI	CTAG	2 cut(s)	105, 261
StyD4I	CCNGG	3 cut(s)	18, 115, 131
TaaI	ACNGT	2 cut(s)	67, 273
TaqI	TCGA	2 cut(s)	51, 138
TasI	AATT	3 cut(s)	147, 173, 264
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	1 cut(s)	264
XspI	CTAG	2 cut(s)	105, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.