Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003142

Physical Location & Seq

Genomic Coordinates Reverse (-)

14177921 .. 14180742

Gene Structure 2822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGTTCATGGATGTGGATGTGAATTCAGAGGTGTATCCGATGAGGGAAGGTGAGAAATTCTCAATGGCTTTAACTTCCACAATCAATTTGGATGGAACTCCTGCTACTAGTTATTTCACCCAGGGCAATCGCAGGACATTGGCTGATGAATATGAGTCTGTCATGCAAGGGAAGCTTTTTAAGATTTCAGAAGGTTCTAAACGTGATCCAAAAGCTTACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb8

Protein Analysis

75

Amino Acids

8.38

Weight (kDa)

4.96

Isoelectric Point (pI)

17.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb8	PF03870	1 - 70	4e-17	RNA polymerase Rpb8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54250 AT3G59600
fragaria_vesca	FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580
malus_domestica	MD03G1174900.v1.1 MD04G1053300.v1.1 MD05G1057600.v1.1 MD11G1193000.v1.1
prunus_persica	Prupe.4G249600_v2.0.a1 Prupe.4G249600_v2.0.a1
pyrus_communis	pycom03g13240 pycom11g16850
rosa_chinensis	RchiOBHm_Chr1g0332731 RchiOBHm_Chr5g0052071 RchiOBHm_Chr6g0273601
rosa_laevigata	RLG00000034845
rosa_multiflora	Rmu_sc0001587.1_g000001 Rmu_sc0032204.1_g000001 Rmu_ssc0000098.1_g000004
rosa_roxburghii	Rroxscaffold_1G00027860 Rroxscaffold_4G00318050
rosa_rugosa	Rorug01G0104600 Rorug05G0275000 Rorug05G0275100
rosa_samantha	Rh1AG127600 Rh1BG097000 Rh1CG121400 Rh5BG358000 Rh5CG383500 Rh5DG373400 Rh6CG194200
rosa_wichuraiana	Rw5G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	2 cut(s)	22, 56
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	175, 215
AluI	AGCT	2 cut(s)	175, 215
AlwI	GGATC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	22, 56
AsuHPI	GGTGA	2 cut(s)	62, 109
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	45
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	122
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BsaAI	YACGTR	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	120, 121
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	120, 121
BseGI	GGATG	3 cut(s)	16, 22, 97
Bsp143I	GATC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	120, 121
BssMI	GATC	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	16, 22, 97
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstSNI	TACGTA	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	16, 22, 97
CviAII	CATG	2 cut(s)	7, 163
CviJI	RGCY	4 cut(s)	68, 143, 175, 215
CviKI_1	RGCY	4 cut(s)	68, 143, 175, 215
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eco105I	TACGTA	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	10, 166
FaiI	YATR	4 cut(s)	8, 153, 164, 223
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	2 cut(s)	6, 162
FokI	GGATG	3 cut(s)	23, 29, 104
FspBI	CTAG	1 cut(s)	108
Hin1II	CATG	2 cut(s)	10, 166
HindIII	AAGCTT	2 cut(s)	173, 213
HinfI	GANTC	1 cut(s)	155
HphI	GGTGA	2 cut(s)	62, 109
Hpy188I	TCNGA	3 cut(s)	28, 39, 190
HpyAV	CCTTC	2 cut(s)	41, 185
HpyCH4IV	ACGT	2 cut(s)	202, 219
HpyCH4V	TGCA	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpySE526I	ACGT	2 cut(s)	202, 219
Hsp92II	CATG	2 cut(s)	10, 166
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	4 cut(s)	107, 114, 118, 134
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	2 cut(s)	202, 219
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MluCI	AATT	3 cut(s)	22, 56, 85
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	2 cut(s)	22, 36
MseI	TTAA	2 cut(s)	71, 180
MslI	CAYNNNNRTG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	2 cut(s)	10, 166
PasI	CCCWGGG	1 cut(s)	121
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PsrI	GAACNNNNNNTAC	2 cut(s)	88, 120
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	71, 180
Sau3AI	GATC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	7 cut(s)	33, 52, 177, 196, 205, 217, 222
SgeI	CNNG	9 cut(s)	19, 113, 120, 133, 134, 145, 175, 179, 215
SmiMI	CAYNNNNRTG	1 cut(s)	11
SnaBI	TACGTA	1 cut(s)	220
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	3 cut(s)	22, 56, 85
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	120
TaiI	ACGT	2 cut(s)	205, 222
TasI	AATT	3 cut(s)	22, 56, 85
Tru1I	TTAA	2 cut(s)	71, 180
Tru9I	TTAA	2 cut(s)	71, 180
TspDTI	ATGAA	1 cut(s)	162
XapI	RAATTY	2 cut(s)	22, 56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.