Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001587.1

Orthogroup ID

OG0003142

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1414

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001587.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 410 bp

atggtcgttgatcgtcttttcgaggatatatttcaggtgttgcgactgaacccagatggaaaaaagtttgataaagttacccgagttgaagcaaagagtgaggcttgcgagatgttcatgcaccttgatgtgaattcagaggtgtaccccatcaaagaaggcgagaagttctccatggctcttacttctacacttaatttggatggaacacctgacactggctatttcaccccgggcaatcgcaagactttggctgatgaatatgaatatgtcatgcaagggaagctttacaaaatttcagaaggctctaaacgtgatcctaaagcggaggtaaatgcttcatttggtgggctcttaatgatgctgaagggggaatccgctcaattcaagaactttgaacttgatcagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb8

Protein Analysis

136

Amino Acids

15.45

Weight (kDa)

4.97

Isoelectric Point (pI)

12.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54250 AT3G59600
fragaria_vesca	FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580
malus_domestica	MD03G1174900.v1.1 MD04G1053300.v1.1 MD05G1057600.v1.1 MD11G1193000.v1.1
prunus_persica	Prupe.4G249600_v2.0.a1 Prupe.4G249600_v2.0.a1
pyrus_communis	pycom03g13240 pycom11g16850
rosa_chinensis	RchiOBHm_Chr1g0332731 RchiOBHm_Chr5g0052071 RchiOBHm_Chr6g0273601
rosa_laevigata	RLG00000034845
rosa_multiflora	Rmu_sc0001587.1_g000001 Rmu_sc0032204.1_g000001 Rmu_ssc0000098.1_g000004
rosa_roxburghii	Rroxscaffold_1G00027860 Rroxscaffold_4G00318050
rosa_rugosa	Rorug01G0104600 Rorug05G0275000 Rorug05G0275100
rosa_samantha	Rh1AG127600 Rh1BG097000 Rh1CG121400 Rh5BG358000 Rh5CG383500 Rh5DG373400 Rh6CG194200
rosa_wichuraiana	Rw5G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	380
AciI	CCGC	2 cut(s)	326, 378
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	2 cut(s)	133, 294
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	3 cut(s)	89, 388, 398
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
AlwI	GGATC	1 cut(s)	311
Ama87I	CYCGRG	2 cut(s)	81, 232
ApoI	RAATTY	2 cut(s)	133, 294
AsuC2I	CCSGG	2 cut(s)	233, 234
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	2 cut(s)	81, 232
BanII	GRGCYC	1 cut(s)	354
BccI	CCATC	3 cut(s)	50, 158, 197
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	2 cut(s)	233, 234
Bme1390I	CCNGG	2 cut(s)	233, 234
BmeT110I	CYCGRG	2 cut(s)	81, 232
BmrFI	CCNGG	2 cut(s)	233, 234
BmsI	GCATC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpuMI	CCSGG	2 cut(s)	233, 234
BsaJI	CCNNGG	3 cut(s)	174, 231, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	223
BseDI	CCNNGG	3 cut(s)	174, 231, 232
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	223
BsiHKCI	CYCGRG	2 cut(s)	81, 232
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	218
BsoBI	CYCGRG	2 cut(s)	81, 232
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	10, 316, 403
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	326, 378
BspPI	GGATC	1 cut(s)	311
BsrBI	CCGCTC	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	3 cut(s)	174, 231, 232
BssMI	GATC	3 cut(s)	10, 316, 403
BssT1I	CCWWGG	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	3 cut(s)	13, 319, 406
BstMBI	GATC	3 cut(s)	10, 316, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	231, 232
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	106
Cfr9I	CCCGGG	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	3 cut(s)	118, 175, 274
CviJI	RGCY	7 cut(s)	104, 179, 222, 254, 286, 306, 352
CviKI_1	RGCY	7 cut(s)	104, 179, 222, 254, 286, 306, 352
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	3 cut(s)	12, 318, 405
DpnII	GATC	3 cut(s)	10, 316, 403
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	354
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	2 cut(s)	81, 232
EcoRI	GAATTC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	121, 178, 277
FaiI	YATR	6 cut(s)	29, 119, 176, 264, 270, 275
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	3 cut(s)	117, 174, 273
FbaI	TGATCA	1 cut(s)	403
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	1 cut(s)	354
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	3 cut(s)	121, 178, 277
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	139, 301, 408
Hpy188III	TCNNGA	1 cut(s)	388
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	152, 296, 361
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	121, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	3 cut(s)	121, 178, 277
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	3 cut(s)	10, 316, 403
LpnPI	CCDG	5 cut(s)	20, 66, 204, 225, 246
LweI	GCATC	1 cut(s)	351
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	12, 318, 405
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	3 cut(s)	10, 316, 403
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	4 cut(s)	133, 196, 294, 383
MnlI	CCTC	4 cut(s)	16, 94, 133, 322
MseI	TTAA	2 cut(s)	195, 356
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	233, 234
MwoI	GCNNNNNNNGC	1 cut(s)	283
NciI	CCSGG	2 cut(s)	233, 234
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	3 cut(s)	10, 316, 403
NlaIII	CATG	3 cut(s)	121, 178, 277
PfeI	GAWTC	1 cut(s)	374
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	195, 356
Sau3AI	GATC	3 cut(s)	10, 316, 403
ScrFI	CCNGG	2 cut(s)	233, 234
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	7 cut(s)	39, 126, 144, 214, 288, 316, 333
SfaNI	GCATC	1 cut(s)	351
SmaI	CCCGGG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	4 cut(s)	133, 196, 294, 383
SsiI	CCGC	2 cut(s)	326, 378
StyD4I	CCNGG	2 cut(s)	231, 232
StyI	CCWWGG	1 cut(s)	174
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	21
TasI	AATT	4 cut(s)	133, 196, 294, 383
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	2 cut(s)	195, 356
Tru9I	TTAA	2 cut(s)	195, 356
TscAI	CASTG	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	106, 273, 279, 330
TspMI	CCCGGG	1 cut(s)	232
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	133, 294
XmaI	CCCGGG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.