Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032204.1

Orthogroup ID

OG0003142

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2342

Gene Structure 2342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032204.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

gatatatttcaggtgttgcgactgaacccagatggaaaaaagtttgataaagttacccgagttgaagcaaagagtgaggcttgcgagatgttcatgcaccttgatgtgaattcagaggtgtaccccatcaaagaaggcgagaagttctccatggctcttacttctacacttaatttggatggaacacctgacactggctatttcaccccgggcaatcgcaagactttggctgatgaatatgaatatgtcatgcaagggaagctttacaaaatttcagaaggctctaaacgtgatcctaaagcggaggtaaatgcttcatttggtgggctcttaatgatgctgaagggggaatccgctcaattcaagaactttgaacttgatcagaggttgtttctcctcattaggaagttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb8

Protein Analysis

137

Amino Acids

15.61

Weight (kDa)

5.93

Isoelectric Point (pI)

11.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54250 AT3G59600
fragaria_vesca	FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580
malus_domestica	MD03G1174900.v1.1 MD04G1053300.v1.1 MD05G1057600.v1.1 MD11G1193000.v1.1
prunus_persica	Prupe.4G249600_v2.0.a1 Prupe.4G249600_v2.0.a1
pyrus_communis	pycom03g13240 pycom11g16850
rosa_chinensis	RchiOBHm_Chr1g0332731 RchiOBHm_Chr5g0052071 RchiOBHm_Chr6g0273601
rosa_laevigata	RLG00000034845
rosa_multiflora	Rmu_sc0001587.1_g000001 Rmu_sc0032204.1_g000001 Rmu_ssc0000098.1_g000004
rosa_roxburghii	Rroxscaffold_1G00027860 Rroxscaffold_4G00318050
rosa_rugosa	Rorug01G0104600 Rorug05G0275000 Rorug05G0275100
rosa_samantha	Rh1AG127600 Rh1BG097000 Rh1CG121400 Rh5BG358000 Rh5CG383500 Rh5DG373400 Rh6CG194200
rosa_wichuraiana	Rw5G032800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	356
AciI	CCGC	2 cut(s)	302, 354
AclWI	GGATC	1 cut(s)	287
AcsI	RAATTY	2 cut(s)	109, 270
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	65, 364, 374
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	2 cut(s)	57, 208
ApoI	RAATTY	2 cut(s)	109, 270
AsuC2I	CCSGG	2 cut(s)	209, 210
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	2 cut(s)	57, 208
BanII	GRGCYC	1 cut(s)	330
BccI	CCATC	3 cut(s)	26, 134, 173
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	2 cut(s)	209, 210
Bme1390I	CCNGG	2 cut(s)	209, 210
BmeT110I	CYCGRG	2 cut(s)	57, 208
BmrFI	CCNGG	2 cut(s)	209, 210
BmsI	GCATC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BpuMI	CCSGG	2 cut(s)	209, 210
BsaJI	CCNNGG	3 cut(s)	150, 207, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	199
BseDI	CCNNGG	3 cut(s)	150, 207, 208
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	386
BsiHKCI	CYCGRG	2 cut(s)	57, 208
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	194
BsoBI	CYCGRG	2 cut(s)	57, 208
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	292, 379
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	2 cut(s)	302, 354
BspPI	GGATC	1 cut(s)	287
BsrBI	CCGCTC	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	150, 207, 208
BssMI	GATC	2 cut(s)	292, 379
BssT1I	CCWWGG	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	295, 382
BstMBI	GATC	2 cut(s)	292, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	207, 208
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	82
Cfr9I	CCCGGG	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	3 cut(s)	94, 151, 250
CviJI	RGCY	7 cut(s)	80, 155, 198, 230, 262, 282, 328
CviKI_1	RGCY	7 cut(s)	80, 155, 198, 230, 262, 282, 328
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	2 cut(s)	294, 381
DpnII	GATC	2 cut(s)	292, 379
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	2 cut(s)	57, 208
EcoRI	GAATTC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	97, 154, 253
FaiI	YATR	6 cut(s)	5, 95, 152, 240, 246, 251
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FatI	CATG	3 cut(s)	93, 150, 249
FbaI	TGATCA	1 cut(s)	379
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	1 cut(s)	330
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	3 cut(s)	97, 154, 253
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	115, 277, 384
Hpy188III	TCNNGA	1 cut(s)	364
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	128, 272, 337
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	97, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpySE526I	ACGT	1 cut(s)	289
Hsp92II	CATG	3 cut(s)	97, 154, 253
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	292, 379
LpnPI	CCDG	4 cut(s)	42, 180, 201, 222
LweI	GCATC	1 cut(s)	327
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	294, 381
MbiI	CCGCTC	1 cut(s)	356
MboI	GATC	2 cut(s)	292, 379
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	4 cut(s)	109, 172, 270, 359
MnlI	CCTC	5 cut(s)	70, 109, 298, 378, 407
MseI	TTAA	2 cut(s)	171, 332
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	209, 210
MwoI	GCNNNNNNNGC	1 cut(s)	259
NciI	CCSGG	2 cut(s)	209, 210
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	292, 379
NlaIII	CATG	3 cut(s)	97, 154, 253
PfeI	GAWTC	1 cut(s)	350
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	171, 332
Sau3AI	GATC	2 cut(s)	292, 379
ScrFI	CCNGG	2 cut(s)	209, 210
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	8 cut(s)	15, 102, 120, 190, 264, 292, 309, 389
SfaNI	GCATC	1 cut(s)	327
SmaI	CCCGGG	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	4 cut(s)	109, 172, 270, 359
SsiI	CCGC	2 cut(s)	302, 354
StyD4I	CCNGG	2 cut(s)	207, 208
StyI	CCWWGG	1 cut(s)	150
TaiI	ACGT	1 cut(s)	292
TasI	AATT	4 cut(s)	109, 172, 270, 359
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	171, 332
Tru9I	TTAA	2 cut(s)	171, 332
TscAI	CASTG	1 cut(s)	199
TspDTI	ATGAA	4 cut(s)	82, 249, 255, 306
TspMI	CCCGGG	1 cut(s)	208
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	2 cut(s)	109, 270
XmaI	CCCGGG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.