DNA-directed RNA polymerases
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G54250 AT3G59600 |
| fragaria_vesca | FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 FvH4_7g05580 |
| malus_domestica | MD03G1174900.v1.1 MD04G1053300.v1.1 MD05G1057600.v1.1 MD11G1193000.v1.1 |
| prunus_persica | Prupe.4G249600_v2.0.a1 Prupe.4G249600_v2.0.a1 |
| pyrus_communis | pycom03g13240 pycom11g16850 |
| rosa_chinensis | RchiOBHm_Chr1g0332731 RchiOBHm_Chr5g0052071 RchiOBHm_Chr6g0273601 |
| rosa_laevigata | RLG00000034845 |
| rosa_multiflora | Rmu_sc0001587.1_g000001 Rmu_sc0032204.1_g000001 Rmu_ssc0000098.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00027860 Rroxscaffold_4G00318050 |
| rosa_rugosa | Rorug01G0104600 Rorug05G0275000 Rorug05G0275100 |
| rosa_samantha | Rh1AG127600 Rh1BG097000 Rh1CG121400 Rh5BG358000 Rh5CG383500 Rh5DG373400 Rh6CG194200 |
| rosa_wichuraiana | Rw5G032800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 323 |
| AclWI | GGATC | 1 cut(s) | 308 |
| AcoI | YGGCCR | 1 cut(s) | 249 |
| AcsI | RAATTY | 3 cut(s) | 130, 164, 291 |
| AcuI | CTGAAG | 2 cut(s) | 318, 383 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 215 |
| AgsI | TTSAA | 3 cut(s) | 289, 385, 395 |
| AluBI | AGCT | 2 cut(s) | 283, 430 |
| AluI | AGCT | 2 cut(s) | 283, 430 |
| Alw26I | GTCTC | 1 cut(s) | 92 |
| AlwI | GGATC | 1 cut(s) | 308 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 37 |
| AoxI | GGCC | 2 cut(s) | 249, 346 |
| ApoI | RAATTY | 3 cut(s) | 130, 164, 291 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 284 |
| AsuHPI | GGTGA | 1 cut(s) | 170 |
| BccI | CCATC | 2 cut(s) | 47, 194 |
| BclI | TGATCA | 1 cut(s) | 400 |
| BcoDI | GTCTC | 1 cut(s) | 92 |
| BfaI | CTAG | 1 cut(s) | 122 |
| BmsI | GCATC | 1 cut(s) | 348 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 152, 184 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 215 |
| Bse1I | ACTGG | 1 cut(s) | 220 |
| BseGI | GGATG | 2 cut(s) | 205, 414 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 215 |
| BseMII | CTCAG | 1 cut(s) | 242 |
| BseNI | ACTGG | 1 cut(s) | 220 |
| BseRI | GAGGAG | 1 cut(s) | 407 |
| BshFI | GGCC | 2 cut(s) | 251, 348 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 215 |
| BsmAI | GTCTC | 1 cut(s) | 92 |
| BsnI | GGCC | 2 cut(s) | 251, 348 |
| Bsp143I | GATC | 3 cut(s) | 7, 313, 400 |
| BspACI | CCGC | 1 cut(s) | 323 |
| BspANI | GGCC | 2 cut(s) | 251, 348 |
| BspCNI | CTCAG | 1 cut(s) | 241 |
| BspPI | GGATC | 1 cut(s) | 308 |
| BsrI | ACTGG | 1 cut(s) | 220 |
| BssMI | GATC | 3 cut(s) | 7, 313, 400 |
| BstDEI | CTNAG | 1 cut(s) | 228 |
| BstF5I | GGATG | 2 cut(s) | 205, 414 |
| BstKTI | GATC | 3 cut(s) | 10, 316, 403 |
| BstMAI | GTCTC | 1 cut(s) | 92 |
| BstMBI | GATC | 3 cut(s) | 7, 313, 400 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 280 |
| BsuRI | GGCC | 2 cut(s) | 251, 348 |
| BtsCI | GGATG | 2 cut(s) | 205, 414 |
| CaiI | CAGNNNCTG | 1 cut(s) | 37 |
| CviAII | CATG | 3 cut(s) | 115, 148, 271 |
| CviJI | RGCY | 7 cut(s) | 176, 219, 251, 283, 348, 374, 430 |
| CviKI_1 | RGCY | 7 cut(s) | 176, 219, 251, 283, 348, 374, 430 |
| DdeI | CTNAG | 1 cut(s) | 228 |
| DpnI | GATC | 3 cut(s) | 9, 315, 402 |
| DpnII | GATC | 3 cut(s) | 7, 313, 400 |
| EaeI | YGGCCR | 1 cut(s) | 249 |
| Eco57I | CTGAAG | 2 cut(s) | 318, 383 |
| EcoRI | GAATTC | 1 cut(s) | 130 |
| FaeI | CATG | 3 cut(s) | 118, 151, 274 |
| FaiI | YATR | 8 cut(s) | 26, 116, 142, 149, 261, 272, 422, 433 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 267, 299 |
| FatI | CATG | 3 cut(s) | 114, 147, 270 |
| FbaI | TGATCA | 1 cut(s) | 400 |
| FokI | GGATG | 2 cut(s) | 212, 421 |
| FspBI | CTAG | 1 cut(s) | 122 |
| HaeIII | GGCC | 2 cut(s) | 251, 348 |
| Hin1II | CATG | 3 cut(s) | 118, 151, 274 |
| HindIII | AAGCTT | 1 cut(s) | 281 |
| HinfI | GANTC | 2 cut(s) | 34, 81 |
| HphI | GGTGA | 1 cut(s) | 170 |
| Hpy188I | TCNGA | 4 cut(s) | 33, 136, 298, 405 |
| Hpy188III | TCNNGA | 1 cut(s) | 385 |
| HpyAV | CCTTC | 3 cut(s) | 149, 293, 358 |
| HpyCH4IV | ACGT | 2 cut(s) | 267, 310 |
| HpyCH4V | TGCA | 2 cut(s) | 118, 274 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 280 |
| HpyF3I | CTNAG | 1 cut(s) | 228 |
| HpySE526I | ACGT | 2 cut(s) | 267, 310 |
| Hsp92II | CATG | 3 cut(s) | 118, 151, 274 |
| Ksp22I | TGATCA | 1 cut(s) | 400 |
| Kzo9I | GATC | 3 cut(s) | 7, 313, 400 |
| LpnPI | CCDG | 4 cut(s) | 63, 201, 215, 222 |
| LweI | GCATC | 1 cut(s) | 348 |
| MaeI | CTAG | 1 cut(s) | 122 |
| MaeII | ACGT | 2 cut(s) | 267, 310 |
| MaeIII | GTNAC | 1 cut(s) | 73 |
| MalI | GATC | 3 cut(s) | 9, 315, 402 |
| MboI | GATC | 3 cut(s) | 7, 313, 400 |
| MluCI | AATT | 5 cut(s) | 130, 164, 193, 291, 380 |
| MnlI | CCTC | 7 cut(s) | 13, 130, 144, 319, 385, 399, 428 |
| MroXI | GAANNNNTTC | 1 cut(s) | 284 |
| MslI | CAYNNNNRTG | 1 cut(s) | 123 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 280 |
| NdeII | GATC | 3 cut(s) | 7, 313, 400 |
| NlaIII | CATG | 3 cut(s) | 118, 151, 274 |
| PdmI | GAANNNNTTC | 1 cut(s) | 284 |
| PfeI | GAWTC | 2 cut(s) | 34, 81 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 196, 228 |
| PstNI | CAGNNNCTG | 1 cut(s) | 37 |
| RseI | CAYNNNNRTG | 1 cut(s) | 123 |
| Sau3AI | GATC | 3 cut(s) | 7, 313, 400 |
| SfaNI | GCATC | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 123 |
| Sse9I | AATT | 5 cut(s) | 130, 164, 193, 291, 380 |
| SsiI | CCGC | 1 cut(s) | 323 |
| SspMI | CTAG | 1 cut(s) | 122 |
| TaiI | ACGT | 2 cut(s) | 270, 313 |
| TaqI | TCGA | 3 cut(s) | 18, 79, 84 |
| TasI | AATT | 5 cut(s) | 130, 164, 193, 291, 380 |
| TfiI | GAWTC | 2 cut(s) | 34, 81 |
| TspDTI | ATGAA | 4 cut(s) | 103, 270, 276, 327 |
| XapI | RAATTY | 3 cut(s) | 130, 164, 291 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 193 |
| XmnI | GAANNNNTTC | 1 cut(s) | 284 |
| XspI | CTAG | 1 cut(s) | 122 |