Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008337

Physical Location & Seq

Genomic Coordinates Reverse (-)

6538622 .. 6544583

Gene Structure 5962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCAGTAGCGGAGCTCTCAACGCCTTCATACACCACCACCCGCCTTGTCCACCCATCCAAGCTCTCCTTCTCAGCCACCCATCTCCGCCGTGTTGCTTTTCCACCTCTCTCTCGCACCCAAAACGCTCGAGTCTCTTGCTCTCTTGCACCCAATCAAGTCCAAGCTCCTGCTCCTACGCTAACTGAAGACCCCAAGAACAAACTCGAGTGTTATGGCGTGTTTTGCCTCACCTATGATCTCAAAGCTGAAGAAGAGACAAAATCCTGGAAGAAAATGATTAATATTGCGGTCTCTGGTGCAGCTGGGATGATTTCTAATCATCTACTATTCAAACTTGCATCGGGCGAGGTTTTTGGGGCAGACCAACCCATTGCATTGAAACTACTGGGATCTGAAAGATCATTTGAAGCTCTCGAAGGAGTTGCTATGGAATTGGAGGATTCCCTATTTCCTTTGTTGAGGGAGGTGAGCATAGGTATTGATCCATATGAGGTGTTCCAAGATGTTGACTGGGCTCTACTAATAGGAGCAAAGCCTAGAGGTCCTGGAATGGAACGAGCTGATTTGTTGGACAAAAATGGGCAGATCTTTGCAGAGCAGGGGAAGGCTCTCAATGCTGTTGCATCTCGTAATGTCAAGGTGATAGTGGTTGGCAACCCTTGTAACACAAACGCACTAATTTGTTTGAAAAATGCTCCGAATATTCCTGCTAAAAATTTTCATGCTTTGACACGGTTGGATGAAAATAGAGCAAAATGTCAGCTGGCCCTCAAAGCGGGTGTCTTCTATGATAAAGTGTCAAATGTGACCATCTGGGGAAATCATTCTACCACTCAGGTCCCAGATTTCTTAAATGCTAAAATTGATGGCTTGCCTGTCAAAGAGGTCATCAAGGATCACAAGTGGTTAGAGGAAGAGTTTACACACAAGGTCCAGACGAGAGGAGGTGCCCTCATAAAAAAGTGGGGAAGATCTTCAGCTGCATCAACTTCCGTGTCAATTGTAGATGCCATAAAGTCCTTGGTTAATCCTACCCCTGAGGGTGATTGGTTTTCTTCTGGTGTTTACACCAGCGGAAATCCGTATGGTATAGCAGAGGATATAGTATTCAGTATGCCATGCAGATCTAAAGGGGACGGGGATTATGAACTTGTGAAGGACATTAAATTTGACGATTATCTTCTCAAGAGAATAACAAAGAGTGAAGCTGAGTTACTGGCTGAGAAAAGATGTGTTGGTCACCTAATTGGACAGGGTATTGCTTTTTGTGATCTGCCCGAGGATACTATGCTTCCTGGAGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008746 GO:0009060 GO:0009117 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0031967 GO:0031975 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0048046 GO:0050896 GO:0051186 GO:0051775 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

437

Amino Acids

47.71

Weight (kDa)

6.13

Isoelectric Point (pI)

30.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	95 - 242	4.5e-36	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	245 - 413	1.2e-48	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58330 AT5G58330 AT5G58330
fragaria_vesca	FvH4_7g06530
malus_domestica	MD02G1243100.v1.1 MD07G1073300.v1.1
prunus_persica	Prupe.2G091600_v2.0.a1
pyrus_communis	pycom02g20970 pycom07g05680
rosa_chinensis	RchiOBHm_Chr1g0334961
rosa_laevigata	RLG00000029409
rosa_multiflora	Rmu_co7973608.1_g000002 Rmu_sc0000574.1_g000062 Rmu_sc0000574.1_g000065
rosa_roxburghii	Rroxscaffold_4G00316350
rosa_rugosa	Rorug01G0118000 Rorug01G0118100
rosa_samantha	Rh1AG141400 Rh1BG108900 Rh1CG133300 Rh1DG145900 Rh1DG146000
rosa_wichuraiana	Rw1G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	950
AciI	CCGC	6 cut(s)	11, 43, 88, 290, 779, 1077
AclWI	GGATC	3 cut(s)	400, 479, 906
AcsI	RAATTY	2 cut(s)	718, 1169
AcuI	CTGAAG	3 cut(s)	207, 270, 963
AfiI	CCNNNNNNNGG	1 cut(s)	778
AgsI	TTSAA	4 cut(s)	334, 382, 410, 691
AjnI	CCWGG	3 cut(s)	266, 547, 1297
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	3 cut(s)	139, 251, 298
AlwI	GGATC	3 cut(s)	400, 479, 906
Ama87I	CYCGRG	3 cut(s)	129, 206, 1280
AoxI	GGCC	1 cut(s)	768
ApeKI	GCWGC	2 cut(s)	302, 983
ApoI	RAATTY	2 cut(s)	718, 1169
ArsI	GACNNNNNNTTYG	4 cut(s)	768, 800, 1154, 1186
AseI	ATTAAT	1 cut(s)	282
Asp700I	GAANNNNTTC	2 cut(s)	826, 976
AspS9I	GGNCC	4 cut(s)	545, 769, 841, 934
AsuHPI	GGTGA	5 cut(s)	223, 481, 655, 1058, 1235
AvaI	CYCGRG	3 cut(s)	129, 206, 1280
AvaII	GGWCC	3 cut(s)	545, 841, 934
AxyI	CCTNAGG	1 cut(s)	1041
BaeGI	GKGCMC	1 cut(s)	955
BanI	GGYRCC	1 cut(s)	950
BanII	GRGCYC	2 cut(s)	18, 520
BarI	GAAGNNNNNNTAC	2 cut(s)	1200, 1232
BbsI	GAAGAC	2 cut(s)	195, 778
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	314, 970
BccI	CCATC	4 cut(s)	64, 90, 821, 863
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	4 cut(s)	120, 154, 407, 441
BciT130I	CCWGG	3 cut(s)	268, 549, 1299
BciVI	GTATCC	1 cut(s)	1279
BcoDI	GTCTC	3 cut(s)	139, 251, 298
BfaI	CTAG	1 cut(s)	540
BfuI	GTATCC	1 cut(s)	1279
BglII	AGATCT	3 cut(s)	588, 974, 1127
BisI	GCNGC	2 cut(s)	303, 984
BlsI	GCNGC	2 cut(s)	304, 985
Bme1390I	CCNGG	3 cut(s)	268, 549, 1299
Bme18I	GGWCC	3 cut(s)	545, 841, 934
BmeT110I	CYCGRG	3 cut(s)	129, 206, 1280
BmgT120I	GGNCC	4 cut(s)	545, 769, 841, 934
BmiI	GGNNCC	2 cut(s)	843, 952
BmrFI	CCNGG	3 cut(s)	268, 549, 1299
BmrI	ACTGGG	2 cut(s)	398, 523
BmsI	GCATC	4 cut(s)	350, 635, 995, 1000
BmuI	ACTGGG	2 cut(s)	398, 523
BpiI	GAAGAC	2 cut(s)	195, 778
BplI	GAGNNNNNCTC	2 cut(s)	939, 971
BpuEI	CTTGAG	1 cut(s)	1172
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	2 cut(s)	1023, 1281
Bsc4I	CCNNNNNNNGG	1 cut(s)	778
Bse1I	ACTGG	3 cut(s)	393, 518, 1224
Bse21I	CCTNAGG	1 cut(s)	1041
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	3 cut(s)	268, 549, 1299
BseDI	CCNNGG	2 cut(s)	1023, 1281
BseGI	GGATG	3 cut(s)	56, 315, 748
BseLI	CCNNNNNNNGG	1 cut(s)	778
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	5 cut(s)	87, 851, 1032, 1203, 1215
BseNI	ACTGG	3 cut(s)	393, 518, 1224
BseRI	GAGGAG	1 cut(s)	960
BseSI	GKGCMC	1 cut(s)	955
BseXI	GCAGC	2 cut(s)	314, 970
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	770
BshNI	GGYRCC	1 cut(s)	950
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	3 cut(s)	129, 206, 1280
BslFI	GGGAC	2 cut(s)	827, 1151
BslI	CCNNNNNNNGG	1 cut(s)	778
BsmAI	GTCTC	3 cut(s)	139, 251, 298
BsmFI	GGGAC	2 cut(s)	827, 1151
BsnI	GGCC	1 cut(s)	770
Bso31I	GGTCTC	1 cut(s)	298
BsoBI	CYCGRG	3 cut(s)	129, 206, 1280
Bsp1286I	GDGCHC	3 cut(s)	18, 520, 955
Bsp143I	GATC	9 cut(s)	238, 392, 401, 484, 588, 898, 974, 1127, 1273
BspACI	CCGC	6 cut(s)	11, 43, 88, 290, 779, 1077
BspANI	GGCC	1 cut(s)	770
BspCNI	CTCAG	5 cut(s)	86, 850, 1033, 1204, 1216
BspLI	GGNNCC	2 cut(s)	843, 952
BspPI	GGATC	3 cut(s)	400, 479, 906
BspT107I	GGYRCC	1 cut(s)	950
BspTNI	GGTCTC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	3 cut(s)	393, 518, 1224
BssECI	CCNNGG	2 cut(s)	1023, 1281
BssMI	GATC	9 cut(s)	238, 392, 401, 484, 588, 898, 974, 1127, 1273
BssT1I	CCWWGG	1 cut(s)	1023
Bst2UI	CCWGG	3 cut(s)	268, 549, 1299
Bst4CI	ACNGT	1 cut(s)	738
Bst6I	CTCTTC	2 cut(s)	249, 912
BstC8I	GCNNGC	2 cut(s)	768, 875
BstDEI	CTNAG	5 cut(s)	73, 837, 1041, 1212, 1224
BstEII	GGTNACC	1 cut(s)	1241
BstF5I	GGATG	3 cut(s)	56, 315, 748
BstKTI	GATC	9 cut(s)	241, 395, 404, 487, 591, 901, 977, 1130, 1276
BstMAI	GTCTC	3 cut(s)	139, 251, 298
BstMBI	GATC	9 cut(s)	238, 392, 401, 484, 588, 898, 974, 1127, 1273
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 225, 617, 776
BstNI	CCWGG	3 cut(s)	268, 549, 1299
BstPI	GGTNACC	1 cut(s)	1241
BstSCI	CCNGG	3 cut(s)	266, 547, 1297
BstSLI	GKGCMC	1 cut(s)	955
BstV1I	GCAGC	2 cut(s)	314, 970
BstV2I	GAAGAC	2 cut(s)	195, 778
BstX2I	RGATCY	4 cut(s)	392, 588, 974, 1127
BstYI	RGATCY	4 cut(s)	392, 588, 974, 1127
Bsu36I	CCTNAGG	1 cut(s)	1041
BsuI	GTATCC	1 cut(s)	1279
BsuRI	GGCC	1 cut(s)	770
BtsCI	GGATG	3 cut(s)	56, 315, 748
Cac8I	GCNNGC	2 cut(s)	768, 875
Cfr13I	GGNCC	4 cut(s)	545, 769, 841, 934
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	2 cut(s)	725, 1122
DdeI	CTNAG	5 cut(s)	73, 837, 1041, 1212, 1224
DpnI	GATC	9 cut(s)	240, 394, 403, 486, 590, 900, 976, 1129, 1275
DpnII	GATC	9 cut(s)	238, 392, 401, 484, 588, 898, 974, 1127, 1273
Eam1104I	CTCTTC	2 cut(s)	249, 912
EarI	CTCTTC	2 cut(s)	249, 912
EciI	GGCGGA	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	1023
Eco24I	GRGCYC	2 cut(s)	18, 520
Eco31I	GGTCTC	1 cut(s)	298
Eco47I	GGWCC	3 cut(s)	545, 841, 934
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	3 cut(s)	207, 270, 963
Eco81I	CCTNAGG	1 cut(s)	1041
Eco88I	CYCGRG	3 cut(s)	129, 206, 1280
Eco91I	GGTNACC	1 cut(s)	1241
EcoICRI	GAGCTC	1 cut(s)	16
EcoO109I	RGGNCCY	2 cut(s)	545, 841
EcoO65I	GGTNACC	1 cut(s)	1241
EcoRII	CCWGG	3 cut(s)	266, 547, 1297
EcoT14I	CCWWGG	1 cut(s)	1023
EcoT38I	GRGCYC	2 cut(s)	18, 520
ErhI	CCWWGG	1 cut(s)	1023
FaeI	CATG	2 cut(s)	728, 1125
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	2 cut(s)	827, 1151
FatI	CATG	2 cut(s)	724, 1121
FauI	CCCGC	2 cut(s)	50, 772
FauNDI	CATATG	1 cut(s)	490
Fnu4HI	GCNGC	2 cut(s)	303, 984
FokI	GGATG	3 cut(s)	43, 322, 755
FriOI	GRGCYC	2 cut(s)	18, 520
Fsp4HI	GCNGC	2 cut(s)	303, 984
FspBI	CTAG	1 cut(s)	540
GluI	GCNGC	2 cut(s)	303, 984
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	770
Hin1II	CATG	2 cut(s)	728, 1125
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	2 cut(s)	132, 443
HphI	GGTGA	5 cut(s)	223, 481, 655, 1058, 1235
Hpy166II	GTNNAC	4 cut(s)	52, 511, 924, 1069
Hpy188I	TCNGA	2 cut(s)	397, 702
Hpy188III	TCNNGA	3 cut(s)	416, 937, 1189
Hpy8I	GTNNAC	4 cut(s)	52, 511, 924, 1069
HpyAV	CCTTC	5 cut(s)	36, 79, 413, 601, 1153
HpyCH4III	ACNGT	1 cut(s)	738
HpyCH4V	TGCA	8 cut(s)	149, 302, 341, 377, 596, 626, 986, 1125
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 225, 617, 776
HpyF3I	CTNAG	5 cut(s)	73, 837, 1041, 1212, 1224
Hsp92II	CATG	2 cut(s)	728, 1125
Kzo9I	GATC	9 cut(s)	238, 392, 401, 484, 588, 898, 974, 1127, 1273
LmnI	GCTCC	5 cut(s)	13, 172, 178, 530, 703
Lsp1109I	GCAGC	2 cut(s)	314, 970
LweI	GCATC	4 cut(s)	350, 635, 995, 1000
MaeI	CTAG	1 cut(s)	540
MaeIII	GTNAC	4 cut(s)	665, 808, 1215, 1241
MalI	GATC	9 cut(s)	240, 394, 403, 486, 590, 900, 976, 1129, 1275
MboI	GATC	9 cut(s)	238, 392, 401, 484, 588, 898, 974, 1127, 1273
MfeI	CAATTG	1 cut(s)	1002
MflI	RGATCY	4 cut(s)	392, 588, 974, 1127
MhlI	GDGCHC	3 cut(s)	18, 520, 955
MluCI	AATT	7 cut(s)	434, 681, 718, 864, 1002, 1169, 1248
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	2 cut(s)	552, 720
MroXI	GAANNNNTTC	2 cut(s)	826, 976
MseI	TTAA	4 cut(s)	282, 854, 1029, 1167
MspA1I	CMGCKG	4 cut(s)	305, 766, 983, 1077
MspR9I	CCNGG	3 cut(s)	268, 549, 1299
MunI	CAATTG	1 cut(s)	1002
MvaI	CCWGG	3 cut(s)	268, 549, 1299
MwoI	GCNNNNNNNGC	4 cut(s)	22, 225, 617, 776
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	9 cut(s)	238, 392, 401, 484, 588, 898, 974, 1127, 1273
NlaIII	CATG	2 cut(s)	728, 1125
NlaIV	GGNNCC	2 cut(s)	843, 952
NmuCI	GTSAC	2 cut(s)	808, 1241
PaeR7I	CTCGAG	2 cut(s)	129, 206
PdmI	GAANNNNTTC	2 cut(s)	826, 976
PfeI	GAWTC	1 cut(s)	443
PfoI	TCCNGGA	3 cut(s)	266, 547, 1297
PkrI	GCNGC	2 cut(s)	304, 985
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PpuMI	RGGWCCY	2 cut(s)	545, 841
PshBI	ATTAAT	1 cut(s)	282
Psp124BI	GAGCTC	1 cut(s)	18
Psp5II	RGGWCCY	2 cut(s)	545, 841
Psp6I	CCWGG	3 cut(s)	266, 547, 1297
PspEI	GGTNACC	1 cut(s)	1241
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	3 cut(s)	266, 547, 1297
PspN4I	GGNNCC	2 cut(s)	843, 952
PspPI	GGNCC	4 cut(s)	545, 769, 841, 934
PspPPI	RGGWCCY	2 cut(s)	545, 841
PspXI	VCTCGAGB	2 cut(s)	129, 206
PsuI	RGATCY	4 cut(s)	392, 588, 974, 1127
PvuII	CAGCTG	3 cut(s)	305, 766, 983
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	4 cut(s)	282, 854, 1029, 1167
SatI	GCNGC	2 cut(s)	303, 984
Sau3AI	GATC	9 cut(s)	238, 392, 401, 484, 588, 898, 974, 1127, 1273
Sau96I	GGNCC	4 cut(s)	545, 769, 841, 934
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	3 cut(s)	268, 549, 1299
SduI	GDGCHC	3 cut(s)	18, 520, 955
SfaNI	GCATC	4 cut(s)	350, 635, 995, 1000
Sfr274I	CTCGAG	2 cut(s)	129, 206
SinI	GGWCC	3 cut(s)	545, 841, 934
SlaI	CTCGAG	2 cut(s)	129, 206
SmlI	CTYRAG	3 cut(s)	129, 206, 1187
SmoI	CTYRAG	3 cut(s)	129, 206, 1187
Sse9I	AATT	7 cut(s)	434, 681, 718, 864, 1002, 1169, 1248
SsiI	CCGC	6 cut(s)	11, 43, 88, 290, 779, 1077
SspI	AATATT	2 cut(s)	286, 706
SspMI	CTAG	1 cut(s)	540
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	3 cut(s)	266, 547, 1297
StyI	CCWWGG	1 cut(s)	1023
TaaI	ACNGT	1 cut(s)	738
TaqI	TCGA	3 cut(s)	130, 207, 417
TasI	AATT	7 cut(s)	434, 681, 718, 864, 1002, 1169, 1248
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	4 cut(s)	282, 854, 1029, 1167
Tru9I	TTAA	4 cut(s)	282, 854, 1029, 1167
TseFI	GTSAC	2 cut(s)	808, 1241
TseI	GCWGC	2 cut(s)	302, 983
Tsp45I	GTSAC	2 cut(s)	808, 1241
TspDTI	ATGAA	4 cut(s)	18, 713, 759, 1164
TspGWI	ACGGA	2 cut(s)	985, 1074
VpaK11BI	GGWCC	3 cut(s)	545, 841, 934
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	2 cut(s)	718, 1169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1021
XhoI	CTCGAG	2 cut(s)	129, 206
XmnI	GAANNNNTTC	2 cut(s)	826, 976
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.