Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7973608.1

Orthogroup ID

OG0008337

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 510

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7973608.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

gcagagctctcaaccccttcattcaccaacacccgccttgttcacccatctaagctctctttctcaaccacccatctccactctcaccgccgtcttgcttttccacctctctctcgcacccataatgctagaatctcttgctctcttgcacccaatcaagttcaagctcctgctcctgcgcaaactgaagagcccaagaacaaggccgagtgttatggcgtgttttgcctcacctatgatctcaaagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008746 GO:0009060 GO:0009117 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0031967 GO:0031975 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0048046 GO:0050896 GO:0051186 GO:0051775 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

83

Amino Acids

9.19

Weight (kDa)

9.3

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58330 AT5G58330 AT5G58330
fragaria_vesca	FvH4_7g06530
malus_domestica	MD02G1243100.v1.1 MD07G1073300.v1.1
prunus_persica	Prupe.2G091600_v2.0.a1
pyrus_communis	pycom02g20970 pycom07g05680
rosa_chinensis	RchiOBHm_Chr1g0334961
rosa_laevigata	RLG00000029409
rosa_multiflora	Rmu_co7973608.1_g000002 Rmu_sc0000574.1_g000062 Rmu_sc0000574.1_g000065
rosa_roxburghii	Rroxscaffold_4G00316350
rosa_rugosa	Rorug01G0118000 Rorug01G0118100
rosa_samantha	Rh1AG141400 Rh1BG108900 Rh1CG133300 Rh1DG145900 Rh1DG146000
rosa_wichuraiana	Rw1G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	180
AciI	CCGC	2 cut(s)	34, 88
AcuI	CTGAAG	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	4 cut(s)	7, 55, 167, 248
AluI	AGCT	4 cut(s)	7, 55, 167, 248
Alw21I	GWGCWC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	181
AsuHPI	GGTGA	4 cut(s)	16, 35, 77, 223
BanII	GRGCYC	2 cut(s)	9, 195
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	2 cut(s)	55, 81
BceAI	ACGGC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	9, 195
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	2 cut(s)	34, 88
BspANI	GGCC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	183
BssMI	GATC	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	206
CfoI	GCGC	1 cut(s)	181
CviJI	RGCY	6 cut(s)	7, 55, 167, 193, 206, 248
CviKI_1	RGCY	6 cut(s)	7, 55, 167, 193, 206, 248
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	2 cut(s)	9, 195
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	7
EcoT38I	GRGCYC	2 cut(s)	9, 195
FaiI	YATR	3 cut(s)	123, 216, 237
FauI	CCCGC	1 cut(s)	41
FriOI	GRGCYC	2 cut(s)	9, 195
FspBI	CTAG	1 cut(s)	129
FspI	TGCGCA	1 cut(s)	180
GlaI	GCGC	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	1 cut(s)	132
HphI	GGTGA	4 cut(s)	16, 35, 77, 223
Hpy166II	GTNNAC	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	51
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	2 cut(s)	172, 178
LpnPI	CCDG	2 cut(s)	183, 189
MaeI	CTAG	1 cut(s)	129
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	200
MhlI	GDGCHC	2 cut(s)	9, 195
MnlI	CCTC	2 cut(s)	117, 239
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	1 cut(s)	238
NmeAIII	GCCGAG	1 cut(s)	232
NsbI	TGCGCA	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	9, 195
SetI	ASST	5 cut(s)	9, 57, 109, 169, 236
SsiI	CCGC	2 cut(s)	34, 88
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	9
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.