Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008337

Physical Location & Seq

Genomic Coordinates Reverse (-)

4942384 .. 4946928

Gene Structure 4545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCAGTAGCTGAGCTATCAACACCTTCATACACCAAGACCCACCTTTTTCAATTATCCCAGCTCTCACCCTTATCGACCCATCTCCACTTTCACCGTCGTGTCGCCTTTCGGCCCCTCCCTCACACTCGAAATGCCAGAATCTGTTGCTCTGTTGCACCCAATAGTAATTTTCTTGTTCCTGATGTCAGTCAAGTTCAAGCTCCAGCAGCTCCAGCGCAAACCGAAGACCCGAAGAACAAGCCTGAGTGCTTCGGCGTGTTCTGCCTCACCTATGATCTCCAAGCTGAAGAAGAGACAAAATCATGGAAGAAATTAATTAATATTGCAGTCTCAGGTGCAGCTGGGATGATATCTAATCATCTACTATTTAAACTTGCGTCAGGCGAGGTTTTTGGGCCAGACCAACCTATTGCGTTGAAACTATTGGGATCTGAAAGGTCCTTCCAAGCTCTTGAAGGAGTTGCCATGGAATTGGAGGATTCTCTTTTTCCGTTGTTGCGGGAGGTGAGCATTGGCATTGATCGATATGAGGTTTTCCAAGATGTAGAATGGGCTCTTTTAATAGGAGCAAAGCCTCGAGGTCCTGGAATGGAAAGAGCAGACTTGTTGGATCTGAATGGGCAGATTTTTGTTGAGCAGGGAAAAGCTCTTAATGCTGTTGCATCACATAACGTCAAAGTGATTGTAGTTGGAAACCCTTGTAATACAAATGCACTCATCTGTTTGAAAAATGCTCCAAACATACCTGCAAAGAATTTTCATGCTTTAACACGGCTGGATGAAAATAGGGCAAAATGTCAGCTAGCCCTCAAAGCAGGTGTCTTCTATGATAAAGTGTCAAACGTGACCATCTGGGGAAACCACTCAACCACCCAGGTGCCAGACTTCTTAAATGCTAGAATTAATGGCTTGCCAGTCAAAGAGGTCATCAAGGATCACAAATGGTTAGAGGAAGAATTTACCGAACTTATCCAGAAGAGAGGAGGTGTGCTCATCAAGAAATGGGGAAGATCGTCAGCTGCATCAACTGCCATGTCAATTGCAGATGCCATAAAGTCTTTGGTTACTCCTACCCCAGAGGGCGATTGGTTTTCATCTGCAGTTTACACAAATGGAAATCCCTATGGTATAGCAGAGGATTTAGTATTCAGTATGCCATGCAGATCTAAAGGAGACGGCGACTATGAACTTGTAAAGGACATACAATTTGATGACTATCTTCGCAAGCGAATAAAAAGGAGCGAAGCTGAGTTACTAGCTGAGAAAAGATGCGTCGCTCACCTTACTGGGCAGGGTATCGCTGTGTGTGATTTACCCGAGGATACTATGCTTCCTGGAGAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008746 GO:0009060 GO:0009117 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0031967 GO:0031975 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0048046 GO:0050896 GO:0051186 GO:0051775 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

450

Amino Acids

49.48

Weight (kDa)

6.16

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	108 - 255	3.9e-34	lactate/malate dehydrogenase, NAD binding domain
Ldh_1_C	PF02866	258 - 428	4.6e-48	lactate/malate dehydrogenase, alpha/beta C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58330 AT5G58330 AT5G58330
fragaria_vesca	FvH4_7g06530
malus_domestica	MD02G1243100.v1.1 MD07G1073300.v1.1
prunus_persica	Prupe.2G091600_v2.0.a1
pyrus_communis	pycom02g20970 pycom07g05680
rosa_chinensis	RchiOBHm_Chr1g0334961
rosa_laevigata	RLG00000029409
rosa_multiflora	Rmu_co7973608.1_g000002 Rmu_sc0000574.1_g000062 Rmu_sc0000574.1_g000065
rosa_roxburghii	Rroxscaffold_4G00316350
rosa_rugosa	Rorug01G0118000 Rorug01G0118100
rosa_samantha	Rh1AG141400 Rh1BG108900 Rh1CG133300 Rh1DG145900 Rh1DG146000
rosa_wichuraiana	Rw1G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	809
AbsI	CCTCGAGG	1 cut(s)	579
Acc36I	ACCTGC	2 cut(s)	757, 809
AccB1I	GGYRCC	1 cut(s)	880
AciI	CCGC	1 cut(s)	502
AclWI	GGATC	3 cut(s)	439, 621, 945
AcsI	RAATTY	2 cut(s)	757, 959
AcuI	CTGAAG	1 cut(s)	309
AgsI	TTSAA	5 cut(s)	53, 200, 421, 458, 730
AjnI	CCWGG	3 cut(s)	586, 876, 1336
AleI	CACNNNNGTG	2 cut(s)	99, 878
Alw21I	GWGCWC	1 cut(s)	996
Alw26I	GTCTC	3 cut(s)	290, 337, 1170
AlwI	GGATC	3 cut(s)	439, 621, 945
AlwNI	CAGNNNCTG	2 cut(s)	11, 144
Ama87I	CYCGRG	2 cut(s)	579, 1319
AoxI	GGCC	2 cut(s)	113, 398
ApeKI	GCWGC	3 cut(s)	209, 341, 1022
ApoI	RAATTY	2 cut(s)	757, 959
ArsI	GACNNNNNNTTYG	4 cut(s)	807, 839, 1193, 1225
AseI	ATTAAT	3 cut(s)	317, 321, 906
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	4 cut(s)	114, 398, 441, 584
AsuHPI	GGTGA	5 cut(s)	60, 86, 262, 520, 1274
AsuNHI	GCTAGC	1 cut(s)	805
AvaI	CYCGRG	2 cut(s)	579, 1319
AvaII	GGWCC	2 cut(s)	441, 584
BanI	GGYRCC	1 cut(s)	880
BanII	GRGCYC	1 cut(s)	559
BarI	GAAGNNNNNNTAC	2 cut(s)	1239, 1271
BbsI	GAAGAC	2 cut(s)	234, 817
Bbv12I	GWGCWC	1 cut(s)	996
BbvI	GCAGC	3 cut(s)	221, 353, 1009
BccI	CCATC	2 cut(s)	90, 860
BceAI	ACGGC	2 cut(s)	791, 1195
BciT130I	CCWGG	3 cut(s)	588, 878, 1338
BciVI	GTATCC	1 cut(s)	1318
BcoDI	GTCTC	3 cut(s)	290, 337, 1170
BfaI	CTAG	3 cut(s)	806, 900, 1259
BfmI	CTRYAG	1 cut(s)	1101
BfuAI	ACCTGC	2 cut(s)	757, 809
BfuI	GTATCC	1 cut(s)	1318
BglII	AGATCT	1 cut(s)	1166
BisI	GCNGC	3 cut(s)	210, 342, 1023
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	3 cut(s)	211, 343, 1024
Bme1390I	CCNGG	3 cut(s)	588, 878, 1338
Bme18I	GGWCC	2 cut(s)	441, 584
BmeT110I	CYCGRG	2 cut(s)	579, 1319
BmgT120I	GGNCC	4 cut(s)	114, 398, 441, 584
BmiI	GGNNCC	2 cut(s)	116, 882
BmrFI	CCNGG	3 cut(s)	588, 878, 1338
BmrI	ACTGGG	1 cut(s)	1299
BmsI	GCATC	4 cut(s)	674, 1034, 1039, 1262
BmtI	GCTAGC	1 cut(s)	809
BmuI	ACTGGG	1 cut(s)	1299
BpiI	GAAGAC	2 cut(s)	234, 817
BplI	GAGNNNNNCTC	2 cut(s)	978, 1010
BpmI	CTGGAG	2 cut(s)	189, 198
Bpu1102I	GCTNAGC	1 cut(s)	12
Bsa29I	ATCGAT	1 cut(s)	526
BsaBI	GATNNNNATC	1 cut(s)	1218
BsaJI	CCNNGG	3 cut(s)	468, 876, 1320
Bse1I	ACTGG	2 cut(s)	917, 1294
Bse8I	GATNNNNATC	1 cut(s)	1218
BseBI	CCWGG	3 cut(s)	588, 878, 1338
BseCI	ATCGAT	1 cut(s)	526
BseDI	CCNNGG	3 cut(s)	468, 876, 1320
BseGI	GGATG	2 cut(s)	354, 787
BseJI	GATNNNNATC	1 cut(s)	1218
BseMII	CTCAG	4 cut(s)	237, 348, 1242, 1254
BseNI	ACTGG	2 cut(s)	917, 1294
BseRI	GAGGAG	1 cut(s)	999
BseXI	GCAGC	3 cut(s)	221, 353, 1009
BseYI	CCCAGC	2 cut(s)	60, 344
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	115, 400
BshNI	GGYRCC	1 cut(s)	880
BshVI	ATCGAT	1 cut(s)	526
BsiHKAI	GWGCWC	1 cut(s)	996
BsiHKCI	CYCGRG	2 cut(s)	579, 1319
BsmAI	GTCTC	3 cut(s)	290, 337, 1170
BsmBI	CGTCTC	1 cut(s)	1170
BsnI	GGCC	2 cut(s)	115, 400
BsoBI	CYCGRG	2 cut(s)	579, 1319
Bsp1286I	GDGCHC	2 cut(s)	559, 996
Bsp143I	GATC	7 cut(s)	277, 431, 523, 613, 937, 1013, 1166
Bsp1720I	GCTNAGC	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	2 cut(s)	115, 400
BspCNI	CTCAG	5 cut(s)	4, 238, 347, 1243, 1255
BspDI	ATCGAT	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	116, 882
BspMAI	CTGCAG	1 cut(s)	1105
BspMI	ACCTGC	2 cut(s)	757, 809
BspOI	GCTAGC	1 cut(s)	809
BspPI	GGATC	3 cut(s)	439, 621, 945
BspT107I	GGYRCC	1 cut(s)	880
BsrI	ACTGG	2 cut(s)	917, 1294
BssECI	CCNNGG	3 cut(s)	468, 876, 1320
BssMI	GATC	7 cut(s)	277, 431, 523, 613, 937, 1013, 1166
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	3 cut(s)	588, 878, 1338
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	2 cut(s)	288, 974
BstAPI	GCANNNNNTGC	1 cut(s)	1031
BstC8I	GCNNGC	3 cut(s)	807, 914, 1229
BstDEI	CTNAG	5 cut(s)	12, 246, 334, 1251, 1263
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	354, 787
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	7 cut(s)	280, 434, 526, 616, 940, 1016, 1169
BstMAI	GTCTC	3 cut(s)	290, 337, 1170
BstMBI	GATC	7 cut(s)	277, 431, 523, 613, 937, 1013, 1166
BstMWI	GCNNNNNNNGC	6 cut(s)	209, 215, 264, 656, 815, 1031
BstNI	CCWGG	3 cut(s)	588, 878, 1338
BstSCI	CCNGG	3 cut(s)	586, 876, 1336
BstSFI	CTRYAG	1 cut(s)	1101
BstV1I	GCAGC	3 cut(s)	221, 353, 1009
BstV2I	GAAGAC	2 cut(s)	234, 817
BstX2I	RGATCY	3 cut(s)	431, 613, 1166
BstXI	CCANNNNNNTGG	1 cut(s)	475
BstYI	RGATCY	3 cut(s)	431, 613, 1166
Bsu15I	ATCGAT	1 cut(s)	526
BsuI	GTATCC	1 cut(s)	1318
BsuRI	GGCC	2 cut(s)	115, 400
BsuTUI	ATCGAT	1 cut(s)	526
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	354, 787
BveI	ACCTGC	2 cut(s)	757, 809
Cac8I	GCNNGC	3 cut(s)	807, 914, 1229
CaiI	CAGNNNCTG	2 cut(s)	11, 144
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	4 cut(s)	114, 398, 441, 584
ClaI	ATCGAT	1 cut(s)	526
CseI	GACGC	2 cut(s)	369, 1264
CviAII	CATG	5 cut(s)	306, 469, 764, 1036, 1161
DdeI	CTNAG	5 cut(s)	12, 246, 334, 1251, 1263
DpnI	GATC	7 cut(s)	279, 433, 525, 615, 939, 1015, 1168
DpnII	GATC	7 cut(s)	277, 431, 523, 613, 937, 1013, 1166
DraI	TTTAAA	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	288, 974
EarI	CTCTTC	2 cut(s)	288, 974
Eco130I	CCWWGG	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	559
Eco32I	GATATC	1 cut(s)	354
Eco47I	GGWCC	2 cut(s)	441, 584
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	2 cut(s)	579, 1319
EcoO109I	RGGNCCY	2 cut(s)	441, 584
EcoRII	CCWGG	3 cut(s)	586, 876, 1336
EcoRV	GATATC	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	468
EcoT38I	GRGCYC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	1170
FaeI	CATG	5 cut(s)	309, 472, 767, 1039, 1164
FatI	CATG	5 cut(s)	305, 468, 763, 1035, 1160
FauI	CCCGC	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	210, 342, 1023
FokI	GGATG	2 cut(s)	361, 794
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	3 cut(s)	210, 342, 1023
FspBI	CTAG	3 cut(s)	806, 900, 1259
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	3 cut(s)	210, 342, 1023
GsaI	CCCAGC	2 cut(s)	64, 348
GsuI	CTGGAG	2 cut(s)	189, 198
HaeIII	GGCC	2 cut(s)	115, 400
HgaI	GACGC	2 cut(s)	369, 1264
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	5 cut(s)	309, 472, 767, 1039, 1164
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	2 cut(s)	141, 482
HphI	GGTGA	5 cut(s)	60, 86, 262, 520, 1274
Hpy166II	GTNNAC	1 cut(s)	1108
Hpy188I	TCNGA	2 cut(s)	436, 618
Hpy188III	TCNNGA	4 cut(s)	182, 455, 976, 1000
Hpy8I	GTNNAC	1 cut(s)	1108
Hpy99I	CGWCG	2 cut(s)	102, 1280
HpyAV	CCTTC	3 cut(s)	36, 452, 454
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	2 cut(s)	675, 846
HpyF10VI	GCNNNNNNNGC	6 cut(s)	209, 215, 264, 656, 815, 1031
HpyF3I	CTNAG	5 cut(s)	12, 246, 334, 1251, 1263
HpySE526I	ACGT	2 cut(s)	675, 846
Hsp92II	CATG	5 cut(s)	309, 472, 767, 1039, 1164
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	7 cut(s)	277, 431, 523, 613, 937, 1013, 1166
LmnI	GCTCC	5 cut(s)	208, 217, 569, 742, 1242
Lsp1109I	GCAGC	3 cut(s)	221, 353, 1009
LweI	GCATC	4 cut(s)	674, 1034, 1039, 1262
MaeI	CTAG	3 cut(s)	806, 900, 1259
MaeII	ACGT	2 cut(s)	675, 846
MaeIII	GTNAC	3 cut(s)	847, 1066, 1254
MalI	GATC	7 cut(s)	279, 433, 525, 615, 939, 1015, 1168
MboI	GATC	7 cut(s)	277, 431, 523, 613, 937, 1013, 1166
MfeI	CAATTG	1 cut(s)	1041
MflI	RGATCY	3 cut(s)	431, 613, 1166
MhlI	GDGCHC	2 cut(s)	559, 996
MmeI	TCCRAC	2 cut(s)	591, 673
MseI	TTAA	8 cut(s)	317, 321, 372, 563, 654, 770, 893, 906
MslI	CAYNNNNRTG	2 cut(s)	99, 878
MspA1I	CMGCKG	2 cut(s)	344, 1022
MspR9I	CCNGG	3 cut(s)	588, 878, 1338
MunI	CAATTG	1 cut(s)	1041
MvaI	CCWGG	3 cut(s)	588, 878, 1338
MwoI	GCNNNNNNNGC	6 cut(s)	209, 215, 264, 656, 815, 1031
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	7 cut(s)	277, 431, 523, 613, 937, 1013, 1166
NheI	GCTAGC	1 cut(s)	805
NlaIII	CATG	5 cut(s)	309, 472, 767, 1039, 1164
NlaIV	GGNNCC	2 cut(s)	116, 882
NmuCI	GTSAC	1 cut(s)	847
OliI	CACNNNNGTG	2 cut(s)	99, 878
PacI	TTAATTAA	1 cut(s)	321
PaeR7I	CTCGAG	1 cut(s)	579
PaqCI	CACCTGC	1 cut(s)	809
PfeI	GAWTC	2 cut(s)	141, 482
PfoI	TCCNGGA	2 cut(s)	586, 1336
PkrI	GCNGC	3 cut(s)	211, 343, 1024
PpuMI	RGGWCCY	2 cut(s)	441, 584
PshBI	ATTAAT	3 cut(s)	317, 321, 906
Psp5II	RGGWCCY	2 cut(s)	441, 584
Psp6I	CCWGG	3 cut(s)	586, 876, 1336
PspFI	CCCAGC	2 cut(s)	60, 344
PspGI	CCWGG	3 cut(s)	586, 876, 1336
PspN4I	GGNNCC	2 cut(s)	116, 882
PspPI	GGNCC	4 cut(s)	114, 398, 441, 584
PspPPI	RGGWCCY	2 cut(s)	441, 584
PspXI	VCTCGAGB	1 cut(s)	579
PstI	CTGCAG	1 cut(s)	1105
PstNI	CAGNNNCTG	2 cut(s)	11, 144
PsuI	RGATCY	3 cut(s)	431, 613, 1166
PvuII	CAGCTG	2 cut(s)	344, 1022
RseI	CAYNNNNRTG	2 cut(s)	99, 878
SaqAI	TTAA	8 cut(s)	317, 321, 372, 563, 654, 770, 893, 906
SatI	GCNGC	3 cut(s)	210, 342, 1023
Sau3AI	GATC	7 cut(s)	277, 431, 523, 613, 937, 1013, 1166
Sau96I	GGNCC	4 cut(s)	114, 398, 441, 584
ScrFI	CCNGG	3 cut(s)	588, 878, 1338
SduI	GDGCHC	2 cut(s)	559, 996
SfaNI	GCATC	4 cut(s)	674, 1034, 1039, 1262
SfcI	CTRYAG	1 cut(s)	1101
Sfr274I	CTCGAG	1 cut(s)	579
SinI	GGWCC	2 cut(s)	441, 584
SlaI	CTCGAG	1 cut(s)	579
SmiMI	CAYNNNNRTG	2 cut(s)	99, 878
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
SsiI	CCGC	1 cut(s)	502
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	3 cut(s)	806, 900, 1259
StyD4I	CCNGG	3 cut(s)	586, 876, 1336
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	2 cut(s)	678, 849
TaqI	TCGA	4 cut(s)	77, 130, 526, 580
TfiI	GAWTC	2 cut(s)	141, 482
Tru1I	TTAA	8 cut(s)	317, 321, 372, 563, 654, 770, 893, 906
Tru9I	TTAA	8 cut(s)	317, 321, 372, 563, 654, 770, 893, 906
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	3 cut(s)	209, 341, 1022
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	5 cut(s)	18, 752, 798, 1086, 1203
TspGWI	ACGGA	1 cut(s)	483
VpaK11BI	GGWCC	2 cut(s)	441, 584
VspI	ATTAAT	3 cut(s)	317, 321, 906
XapI	RAATTY	2 cut(s)	757, 959
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1060, 1086
XhoI	CTCGAG	1 cut(s)	579
XspI	CTAG	3 cut(s)	806, 900, 1259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.