Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008337

Physical Location & Seq

Genomic Coordinates Reverse (-)

20698309 .. 20698878

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0118000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCGTCTGATGAAGAAGAGCCATTGGAAGTAGAGGAAGTGAATGATGATGAAGATCCAGAAGAGGTGAGTTCATTGACGGGTCCAGAAACTGGATCTACAGCTAGTGGTCCCTCGGTTAATTTTCAGGCACCTTCAGATTGGCCACCTTGGGGACAAGTGCAGCTTCCAGCAGAGCCTTTTGCAGCCGACTTACTACAGGAGGACTGGACTGTGGGTCAGTATACCTGCTTATTCACTCGGGGCCTTCAGGAGAAAAGGAAGGCTGGTCGTACGAGATCAAGACAAGCGGTCACAAGGAGTTACATTCTTGGTTTCAACTCCAAGATTCGGGAACATATGCTTCGCTATTATAATGATGATCGTCAGTATACTTCACTATTAGATATAGCTGAAGCGGTCGAAAGGGTGATAGGTATCGTTGACACAATTGAACATTACAAAGCTCATCGCCTACTGATTCCCGACGCGTTTAAGGAGGAATTGCTCGCATGTGATTTAATGAAGGGTATATATTTCGAGGAGTGCAGACTTCGAAATATAGTTCCGGTTTGGACACAACTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008746 GO:0009060 GO:0009117 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0031967 GO:0031975 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0048046 GO:0050896 GO:0051186 GO:0051775 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

189

Amino Acids

21.64

Weight (kDa)

4.55

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58330 AT5G58330 AT5G58330
fragaria_vesca	FvH4_7g06530
malus_domestica	MD02G1243100.v1.1 MD07G1073300.v1.1
prunus_persica	Prupe.2G091600_v2.0.a1
pyrus_communis	pycom02g20970 pycom07g05680
rosa_chinensis	RchiOBHm_Chr1g0334961
rosa_laevigata	RLG00000029409
rosa_multiflora	Rmu_co7973608.1_g000002 Rmu_sc0000574.1_g000062 Rmu_sc0000574.1_g000065
rosa_roxburghii	Rroxscaffold_4G00316350
rosa_rugosa	Rorug01G0118000 Rorug01G0118100
rosa_samantha	Rh1AG141400 Rh1BG108900 Rh1CG133300 Rh1DG145900 Rh1DG146000
rosa_wichuraiana	Rw1G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
Acc36I	ACCTGC	1 cut(s)	236
AccB1I	GGYRCC	1 cut(s)	130
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccI	GTMKAC	2 cut(s)	224, 371
AccII	CGCG	1 cut(s)	470
AciI	CCGC	2 cut(s)	290, 398
AclWI	GGATC	2 cut(s)	50, 103
AcoI	YGGCCR	1 cut(s)	143
AcuI	CTGAAG	3 cut(s)	120, 233, 414
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	92, 152, 330
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	2 cut(s)	319, 434
AhdI	GACNNNNNGTC	2 cut(s)	216, 290
AluBI	AGCT	4 cut(s)	104, 166, 392, 446
AluI	AGCT	4 cut(s)	104, 166, 392, 446
AlwI	GGATC	2 cut(s)	50, 103
AlwNI	CAGNNNCTG	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	2 cut(s)	143, 244
ApeKI	GCWGC	2 cut(s)	163, 185
AspS9I	GGNCC	3 cut(s)	83, 110, 244
AsuHPI	GGTGA	2 cut(s)	79, 421
AsuII	TTCGAA	1 cut(s)	535
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	83, 110
BalI	TGGCCA	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	175, 197
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	2 cut(s)	99, 197
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	2 cut(s)	164, 186
BlsI	GCNGC	2 cut(s)	165, 187
Bme18I	GGWCC	2 cut(s)	83, 110
BmeRI	GACNNNNNGTC	2 cut(s)	216, 290
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	3 cut(s)	83, 110, 244
BmiI	GGNNCC	4 cut(s)	84, 112, 132, 245
Bpu14I	TTCGAA	1 cut(s)	535
BsaBI	GATNNNNATC	2 cut(s)	54, 416
BsaJI	CCNNGG	2 cut(s)	114, 149
BsaWI	WCCGGW	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 152, 330
Bse1I	ACTGG	2 cut(s)	97, 212
Bse8I	GATNNNNATC	2 cut(s)	54, 416
BseDI	CCNNGG	2 cut(s)	114, 149
BseJI	GATNNNNATC	2 cut(s)	54, 416
BseLI	CCNNNNNNNGG	3 cut(s)	92, 152, 330
BseNI	ACTGG	2 cut(s)	97, 212
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	2 cut(s)	175, 197
BsgI	GTGCAG	2 cut(s)	182, 547
Bsh1236I	CGCG	1 cut(s)	470
Bsh1285I	CGRYCG	1 cut(s)	402
BshFI	GGCC	2 cut(s)	145, 246
BshNI	GGYRCC	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	548
BsiWI	CGTACG	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	96, 168
BslI	CCNNNNNNNGG	3 cut(s)	92, 152, 330
BsmFI	GGGAC	2 cut(s)	96, 168
BsnI	GGCC	2 cut(s)	145, 246
BsoBI	CYCGRG	1 cut(s)	240
Bsp119I	TTCGAA	1 cut(s)	535
Bsp143I	GATC	4 cut(s)	55, 95, 278, 361
BspACI	CCGC	2 cut(s)	290, 398
BspANI	GGCC	2 cut(s)	145, 246
BspFNI	CGCG	1 cut(s)	470
BspLI	GGNNCC	4 cut(s)	84, 112, 132, 245
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	2 cut(s)	50, 103
BspQI	GCTCTTC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	535
BspT107I	GGYRCC	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	97, 212
BssECI	CCNNGG	2 cut(s)	114, 149
BssMI	GATC	4 cut(s)	55, 95, 278, 361
BssNAI	GTATAC	2 cut(s)	225, 372
BssT1I	CCWWGG	1 cut(s)	149
Bst1107I	GTATAC	2 cut(s)	225, 372
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	12, 57
BstBI	TTCGAA	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	489
BstFNI	CGCG	1 cut(s)	470
BstKTI	GATC	4 cut(s)	58, 98, 281, 364
BstMBI	GATC	4 cut(s)	55, 95, 278, 361
BstMCI	CGRYCG	1 cut(s)	402
BstNSI	RCATGY	1 cut(s)	495
BstSFI	CTRYAG	2 cut(s)	99, 197
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	175, 197
BstX2I	RGATCY	2 cut(s)	55, 95
BstYI	RGATCY	2 cut(s)	55, 95
BstZ17I	GTATAC	2 cut(s)	225, 372
BsuRI	GGCC	2 cut(s)	145, 246
BtgZI	GCGATG	1 cut(s)	434
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	489
CaiI	CAGNNNCTG	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	83, 110, 244
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	1 cut(s)	492
CviQI	GTAC	1 cut(s)	273
DpnI	GATC	4 cut(s)	57, 97, 280, 363
DpnII	GATC	4 cut(s)	55, 95, 278, 361
DriI	GACNNNNNGTC	2 cut(s)	216, 290
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	12, 57
Eam1105I	GACNNNNNGTC	2 cut(s)	216, 290
EarI	CTCTTC	2 cut(s)	12, 57
Eco130I	CCWWGG	1 cut(s)	149
Eco47I	GGWCC	2 cut(s)	83, 110
Eco57I	CTGAAG	3 cut(s)	120, 233, 414
Eco88I	CYCGRG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	495
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	2 cut(s)	96, 168
FatI	CATG	1 cut(s)	491
FauNDI	CATATG	1 cut(s)	339
FblI	GTMKAC	2 cut(s)	224, 371
Fnu4HI	GCNGC	2 cut(s)	164, 186
Fsp4HI	GCNGC	2 cut(s)	164, 186
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	2 cut(s)	164, 186
HaeIII	GGCC	2 cut(s)	145, 246
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	1 cut(s)	476
Hin1II	CATG	1 cut(s)	495
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	328, 460
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	2 cut(s)	79, 421
Hpy166II	GTNNAC	3 cut(s)	225, 372, 424
Hpy188I	TCNGA	2 cut(s)	10, 139
Hpy188III	TCNNGA	6 cut(s)	59, 86, 251, 282, 332, 464
Hpy8I	GTNNAC	3 cut(s)	225, 372, 424
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	4 cut(s)	144, 256, 257, 499
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	163, 185, 528
Hsp92II	CATG	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	55, 95, 278, 361
LguI	GCTCTTC	1 cut(s)	12
Lsp1109I	GCAGC	2 cut(s)	175, 197
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	292, 302
MalI	GATC	4 cut(s)	57, 97, 280, 363
MboI	GATC	4 cut(s)	55, 95, 278, 361
MboII	GAAGA	4 cut(s)	26, 29, 65, 74
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	2 cut(s)	55, 95
MlsI	TGGCCA	1 cut(s)	145
MluCI	AATT	3 cut(s)	121, 429, 482
MluI	ACGCGT	1 cut(s)	468
MluNI	TGGCCA	1 cut(s)	145
MnlI	CCTC	6 cut(s)	28, 58, 124, 196, 472, 514
Mox20I	TGGCCA	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	145
MseI	TTAA	3 cut(s)	120, 474, 500
Msp20I	TGGCCA	1 cut(s)	145
MspI	CCGG	1 cut(s)	548
MunI	CAATTG	1 cut(s)	429
MvnI	CGCG	1 cut(s)	470
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	4 cut(s)	55, 95, 278, 361
NlaIII	CATG	1 cut(s)	495
NlaIV	GGNNCC	4 cut(s)	84, 112, 132, 245
NmuCI	GTSAC	1 cut(s)	292
NspI	RCATGY	1 cut(s)	495
NspV	TTCGAA	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	328, 460
Pfl23II	CGTACG	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	165, 187
PsiI	TTATAA	1 cut(s)	354
PspLI	CGTACG	1 cut(s)	272
PspN4I	GGNNCC	4 cut(s)	84, 112, 132, 245
PspPI	GGNCC	3 cut(s)	83, 110, 244
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	2 cut(s)	55, 95
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	120, 474, 500
SatI	GCNGC	2 cut(s)	164, 186
Sau3AI	GATC	4 cut(s)	55, 95, 278, 361
Sau96I	GGNCC	3 cut(s)	83, 110, 244
SetI	ASST	9 cut(s)	69, 106, 136, 151, 168, 230, 394, 418, 448
SfcI	CTRYAG	2 cut(s)	99, 197
SfuI	TTCGAA	1 cut(s)	535
SinI	GGWCC	2 cut(s)	83, 110
Sse9I	AATT	3 cut(s)	121, 429, 482
SsiI	CCGC	2 cut(s)	290, 398
SspMI	CTAG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	4 cut(s)	402, 519, 535, 564
TasI	AATT	3 cut(s)	121, 429, 482
TfiI	GAWTC	2 cut(s)	328, 460
Tru1I	TTAA	3 cut(s)	120, 474, 500
Tru9I	TTAA	3 cut(s)	120, 474, 500
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	2 cut(s)	163, 185
Tsp45I	GTSAC	1 cut(s)	292
TspDTI	ATGAA	4 cut(s)	27, 63, 66, 518
Van91I	CCANNNNNTGG	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	83, 110
XceI	RCATGY	1 cut(s)	495
XmiI	GTMKAC	2 cut(s)	224, 371
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.