Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000574.1

Orthogroup ID

OG0008337

Physical Location & Seq

Genomic Coordinates Reverse (-)

231753 .. 234589

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000574.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atggaattggaggattccctatttcctttgttgagggaggtgagcatcagtattgatccatatgaggtgttccaagatgttgactgggctctactaataggagcaaagcctagaggtcctggaatggaacgagctgatttgttggatataaatgggcagatctttgcagcgcagggaaaggctcttaatgctgttgcatctcgtaatgttaaggtgatagtggttggcaacccttgtaacacaaatgcactaatttttttgaaaaatgctccaaacattcctgctaaaaattttcatgctttgacacggctggatgaaaatagagcaaaatgtcagctggtcctcaaagctggtgtcttctatgataaagtttcaaacgtgaccatctggggaaatcattctaccactcaggtcccagatttcttaaatgctagaattgatggcttgcctgtcaaagtggtcatcaaagatcacaagtggttagaggaggagtttacacacaaggtccagacgagaggaggtgctctcataaaaaagtggggaagatcttcagctgcatcaacttctgtgtcgattgtagatgccataaagtccttggttaatcctacccctgagggtgattggttttcttctggtagtgaagctgagttactagctgagaaaagatgtgttggtcactggccagcccgtgcaacacacctgcgatcataccagcctcctgcgcagctgcacactgcctgcaagaagccttactgcagcaaagcctgcagcctcctctgcaagcctactgaagcctctaccgccctagcctcctgccacgcctcctgcagtccactatcgcagcccctgctgctcctgccgcaagtccccgcagcctccctgcgcaccagcccgcctgcagccctgcacaccgctcactgcagccccatgcctgctgcccccacaacctctgcgcaaaccttgctagcttctgccttccccaaccaacgcagccacagcccagtcagctccagccctgtccagctcgcctccctgcagcccagccgctcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008746 GO:0009060 GO:0009117 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0031967 GO:0031975 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0048046 GO:0050896 GO:0051186 GO:0051775 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

350

Amino Acids

37.71

Weight (kDa)

8.98

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58330 AT5G58330 AT5G58330
fragaria_vesca	FvH4_7g06530
malus_domestica	MD02G1243100.v1.1 MD07G1073300.v1.1
prunus_persica	Prupe.2G091600_v2.0.a1
pyrus_communis	pycom02g20970 pycom07g05680
rosa_chinensis	RchiOBHm_Chr1g0334961
rosa_laevigata	RLG00000029409
rosa_multiflora	Rmu_co7973608.1_g000002 Rmu_sc0000574.1_g000062 Rmu_sc0000574.1_g000065
rosa_roxburghii	Rroxscaffold_4G00316350
rosa_rugosa	Rorug01G0118000 Rorug01G0118100
rosa_samantha	Rh1AG141400 Rh1BG108900 Rh1CG133300 Rh1DG145900 Rh1DG146000
rosa_wichuraiana	Rw1G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	708
Acc16I	TGCGCA	3 cut(s)	723, 884, 954
Acc36I	ACCTGC	1 cut(s)	708
AccBSI	CCGCTC	2 cut(s)	914, 1047
AciI	CCGC	6 cut(s)	801, 860, 870, 893, 912, 1045
AclWI	GGATC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	680
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	2 cut(s)	534, 810
AgsI	TTSAA	2 cut(s)	262, 375
AjnI	CCWGG	1 cut(s)	118
Alw21I	GWGCWC	1 cut(s)	526
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	847
AoxI	GGCC	1 cut(s)	680
ApoI	RAATTY	1 cut(s)	289
ArsI	GACNNNNNNTTYG	2 cut(s)	339, 371
Asp700I	GAANNNNTTC	2 cut(s)	397, 547
AspLEI	GCGC	4 cut(s)	172, 724, 885, 955
AspS9I	GGNCC	4 cut(s)	116, 340, 412, 505
AsuHPI	GGTGA	3 cut(s)	52, 226, 629
AsuNHI	GCTAGC	1 cut(s)	964
AvaII	GGWCC	4 cut(s)	116, 340, 412, 505
AxyI	CCTNAGG	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	91
BarI	GAAGNNNNNNTAC	2 cut(s)	633, 665
BbsI	GAAGAC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	526
BccI	CCATC	2 cut(s)	392, 434
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	120
BfaI	CTAG	6 cut(s)	111, 432, 653, 806, 965, 1051
BfmI	CTRYAG	6 cut(s)	754, 766, 826, 897, 919, 1034
BfuAI	ACCTGC	1 cut(s)	708
BglII	AGATCT	2 cut(s)	159, 545
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	4 cut(s)	116, 340, 412, 505
BmgT120I	GGNCC	4 cut(s)	116, 340, 412, 505
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	120
BmrI	ACTGGG	2 cut(s)	94, 995
BmsI	GCATC	4 cut(s)	54, 206, 566, 571
BmtI	GCTAGC	1 cut(s)	968
BmuI	ACTGGG	2 cut(s)	94, 995
BpiI	GAAGAC	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	510, 542
BpmI	CTGGAG	1 cut(s)	994
BsaJI	CCNNGG	1 cut(s)	594
Bse1I	ACTGG	3 cut(s)	89, 683, 1001
Bse21I	CCTNAGG	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	1 cut(s)	319
BseMII	CTCAG	4 cut(s)	422, 603, 636, 648
BseNI	ACTGG	3 cut(s)	89, 683, 1001
BseRI	GAGGAG	4 cut(s)	500, 503, 531, 764
BseYI	CCCAGC	1 cut(s)	1040
BsgI	GTGCAG	2 cut(s)	713, 890
BshFI	GGCC	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	526
BslFI	GGGAC	2 cut(s)	398, 851
BsmFI	GGGAC	2 cut(s)	398, 851
BsnI	GGCC	1 cut(s)	682
Bsp1286I	GDGCHC	2 cut(s)	91, 526
Bsp143I	GATC	5 cut(s)	55, 159, 469, 545, 704
BspACI	CCGC	6 cut(s)	801, 860, 870, 893, 912, 1045
BspANI	GGCC	1 cut(s)	682
BspCNI	CTCAG	4 cut(s)	421, 604, 637, 649
BspLI	GGNNCC	1 cut(s)	414
BspMAI	CTGCAG	6 cut(s)	758, 770, 830, 901, 923, 1038
BspMI	ACCTGC	1 cut(s)	708
BspOI	GCTAGC	1 cut(s)	968
BspPI	GGATC	1 cut(s)	50
BsrBI	CCGCTC	2 cut(s)	914, 1047
BsrI	ACTGG	3 cut(s)	89, 683, 1001
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	5 cut(s)	55, 159, 469, 545, 704
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	120
BstAPI	GCANNNNNTGC	3 cut(s)	765, 847, 961
BstDEI	CTNAG	4 cut(s)	408, 612, 645, 657
BstF5I	GGATG	1 cut(s)	319
BstHHI	GCGC	4 cut(s)	172, 724, 885, 955
BstKTI	GATC	5 cut(s)	58, 162, 472, 548, 707
BstMBI	GATC	5 cut(s)	55, 159, 469, 545, 704
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	6 cut(s)	754, 766, 826, 897, 919, 1034
BstV2I	GAAGAC	1 cut(s)	349
BstX2I	RGATCY	2 cut(s)	159, 545
BstYI	RGATCY	2 cut(s)	159, 545
Bsu36I	CCTNAGG	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	682
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	2 cut(s)	732, 916
BtsIMutI	CAGTG	3 cut(s)	676, 732, 916
BveI	ACCTGC	1 cut(s)	708
CaiI	CAGNNNCTG	1 cut(s)	847
CfoI	GCGC	4 cut(s)	172, 724, 885, 955
Cfr13I	GGNCC	4 cut(s)	116, 340, 412, 505
CviAII	CATG	2 cut(s)	296, 928
DdeI	CTNAG	4 cut(s)	408, 612, 645, 657
DpnI	GATC	5 cut(s)	57, 161, 471, 547, 706
DpnII	GATC	5 cut(s)	55, 159, 469, 545, 704
EaeI	YGGCCR	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	4 cut(s)	116, 340, 412, 505
Eco57I	CTGAAG	2 cut(s)	534, 810
Eco81I	CCTNAGG	1 cut(s)	612
EcoO109I	RGGNCCY	2 cut(s)	116, 412
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	2 cut(s)	299, 931
FaiI	YATR	9 cut(s)	61, 63, 149, 297, 363, 530, 587, 709, 929
FaqI	GGGAC	2 cut(s)	398, 851
FatI	CATG	2 cut(s)	295, 927
FauI	CCCGC	2 cut(s)	877, 900
FauNDI	CATATG	1 cut(s)	61
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	91
FspBI	CTAG	6 cut(s)	111, 432, 653, 806, 965, 1051
FspI	TGCGCA	3 cut(s)	723, 884, 954
GlaI	GCGC	4 cut(s)	171, 723, 884, 954
GsaI	CCCAGC	1 cut(s)	1044
GsuI	CTGGAG	1 cut(s)	994
HaeIII	GGCC	1 cut(s)	682
HhaI	GCGC	4 cut(s)	172, 724, 885, 955
Hin1II	CATG	2 cut(s)	299, 931
Hin6I	GCGC	4 cut(s)	170, 722, 883, 953
HinP1I	GCGC	4 cut(s)	170, 722, 883, 953
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	14
HphI	GGTGA	3 cut(s)	52, 226, 629
Hpy166II	GTNNAC	3 cut(s)	82, 495, 833
Hpy188III	TCNNGA	1 cut(s)	508
Hpy8I	GTNNAC	3 cut(s)	82, 495, 833
HpyAV	CCTTC	1 cut(s)	985
HpyCH4IV	ACGT	1 cut(s)	378
HpyF3I	CTNAG	4 cut(s)	408, 612, 645, 657
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	299, 931
HspAI	GCGC	4 cut(s)	170, 722, 883, 953
Kzo9I	GATC	5 cut(s)	55, 159, 469, 545, 704
LmnI	GCTCC	5 cut(s)	101, 274, 858, 1013, 1052
LweI	GCATC	4 cut(s)	54, 206, 566, 571
MaeI	CTAG	6 cut(s)	111, 432, 653, 806, 965, 1051
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	4 cut(s)	236, 379, 648, 674
MalI	GATC	5 cut(s)	57, 161, 471, 547, 706
MbiI	CCGCTC	2 cut(s)	914, 1047
MboI	GATC	5 cut(s)	55, 159, 469, 545, 704
MboII	GAAGA	4 cut(s)	349, 540, 555, 621
MflI	RGATCY	2 cut(s)	159, 545
MhlI	GDGCHC	2 cut(s)	91, 526
MlsI	TGGCCA	1 cut(s)	682
MluCI	AATT	4 cut(s)	5, 252, 289, 435
MluNI	TGGCCA	1 cut(s)	682
MmeI	TCCRAC	1 cut(s)	123
Mox20I	TGGCCA	1 cut(s)	682
MroXI	GAANNNNTTC	2 cut(s)	397, 547
MscI	TGGCCA	1 cut(s)	682
MseI	TTAA	4 cut(s)	186, 210, 425, 600
Msp20I	TGGCCA	1 cut(s)	682
MspA1I	CMGCKG	3 cut(s)	337, 554, 727
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	5 cut(s)	55, 159, 469, 545, 704
NheI	GCTAGC	1 cut(s)	964
NlaIII	CATG	2 cut(s)	299, 931
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	2 cut(s)	379, 674
NsbI	TGCGCA	3 cut(s)	723, 884, 954
PaqCI	CACCTGC	1 cut(s)	708
PdmI	GAANNNNTTC	2 cut(s)	397, 547
PfeI	GAWTC	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	118
PpuMI	RGGWCCY	2 cut(s)	116, 412
Psp5II	RGGWCCY	2 cut(s)	116, 412
Psp6I	CCWGG	1 cut(s)	118
PspFI	CCCAGC	1 cut(s)	1040
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	4 cut(s)	116, 340, 412, 505
PspPPI	RGGWCCY	2 cut(s)	116, 412
PstI	CTGCAG	6 cut(s)	758, 770, 830, 901, 923, 1038
PstNI	CAGNNNCTG	1 cut(s)	847
PsuI	RGATCY	2 cut(s)	159, 545
PvuII	CAGCTG	3 cut(s)	337, 554, 727
SaqAI	TTAA	4 cut(s)	186, 210, 425, 600
Sau3AI	GATC	5 cut(s)	55, 159, 469, 545, 704
Sau96I	GGNCC	4 cut(s)	116, 340, 412, 505
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	2 cut(s)	91, 526
SfaNI	GCATC	4 cut(s)	54, 206, 566, 571
SfcI	CTRYAG	6 cut(s)	754, 766, 826, 897, 919, 1034
SinI	GGWCC	4 cut(s)	116, 340, 412, 505
Sse9I	AATT	4 cut(s)	5, 252, 289, 435
SsiI	CCGC	6 cut(s)	801, 860, 870, 893, 912, 1045
SspMI	CTAG	6 cut(s)	111, 432, 653, 806, 965, 1051
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	594
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	572
TasI	AATT	4 cut(s)	5, 252, 289, 435
TauI	GCSGC	2 cut(s)	862, 1047
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	4 cut(s)	186, 210, 425, 600
Tru9I	TTAA	4 cut(s)	186, 210, 425, 600
TscAI	CASTG	3 cut(s)	683, 739, 923
TseFI	GTSAC	2 cut(s)	379, 674
Tsp45I	GTSAC	2 cut(s)	379, 674
TspDTI	ATGAA	2 cut(s)	284, 330
TspRI	CASTG	3 cut(s)	683, 739, 923
VpaK11BI	GGWCC	4 cut(s)	116, 340, 412, 505
XapI	RAATTY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XmnI	GAANNNNTTC	2 cut(s)	397, 547
XspI	CTAG	6 cut(s)	111, 432, 653, 806, 965, 1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.