Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008337

Physical Location & Seq

Genomic Coordinates Forward (+)

20716944 .. 20719124

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0118100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2181 bp

ATGAATGGAAGGTTGAGAGGGGCTGAAATTTGTGCTGGTGCGCCTAGCATATCCCATCTTTTCTTTGCAGACGATTCTTTTATCTTCTGTAAAGCGGAGACTACTGATTGTGTTAGCTTGAAAGGGGTACTACACTTGTATGAAATGGCTTCTGGGCAACAGATTAATCTCCAAAAAAGTTCCATCTCCTTTAGCAAAAATGTCTTGTTGGAGGAACAGGAAAGGTTGGCGGATTTGTTAGGGGTACAAAGAGTGGATAAACATGATAAGTATTTGGGGTTACCAGTTGAGTTAAGTTATTCGAAAGAGGAGGCATTTGGGTACTTGACAGAAAGAGTGCAAAAACGGACACATGGATGGAGAGATAAACTTCTCAGTGCAGCAGGGAAGGAAATATTGATCAAAGCTGTGGTACAGGCTATCCCGTCCTATGTAATGAATTGTTTCGAGTTACCGAAACATTTATGCAGTGAGATGCATAGATTGATGGCTCCGTTTTGGTGGGGGGATGTGGAGGGTAAAGGGAAGATCCATTGGTTATCTTGGGATAAACTTTGTGTTTCGAAGAGGGAGGGTGGTTTAGGGTTTAGGGATATGCATGATTTTAATTTAGCCTTATTAGCTAAACAGGGTTGGCGCATCATCAAAAGACCAGACTCTTTGCTCTCAAGGCTATTAAAAGCTAAATACTTCCCCAATACAGCGTTTATGGATGCAAGGTTAGAGGCTGGAGCTTCATACACTTGGAGAAGTATATTGGCTGGTAGGCGAGTTTTGTGTACAGGAATGAGGTTCCAAGTTGGTAGTGGGCATGATATTTCGGTTTGGGATGATAAATGGCTTCCGGTGCCTTATAATTTCAAACCGTTCTCTTTGCCAATGGAGGGACTCGAAGATTTGAAGGTGGTGGATTTGATCGATCCAGATGTTAAAGCCTGGCAACTGGATTTGCTGCAGGAACTTTTTACACCTCATGAGGTAGATGTCATTGCTAGTATACCTTTGAGTTTGAGACATACAGAAGATCGCTTGGTTTGGCATTTTGACAAAAAGGGCTGTTACAATGTTAAAAGTGGGTACTTTGCCTGGAGGGAAGCTAGAGAAGCTTCGTCAACTGCCTCTTCTTCTAGCAATGCGACTGGTGGGCAGTTGGGTAGGTATTGGGCTGCAGTCTGGAAGATGCATGTACCGGCTAAAGTCAAGGTTTTTGTCTGGAGGTTGTTGCGTGACATTCTGCCAACTCGTACTGCTCTACTTCGTCGCAAGGTACATATTGTAGACTATAATTGTCTCTTGTGTAATTTAAAGGCAGAAACTAGTCTACATATTTTCAAAGAATGTACTGCCATTAAATCTTTTTGGTTGGAGGGCCCACTGAAGCTAGCCCCCCATAATCATCCTGCTCCAAATTTATGTGAATGGATGTGGTCTATGATTGATACGTTGTCTACTGAGGAGCAAGGCTTGTTTTGCACTTCTTTATGGGCCGTCTGGGCTGAAAGAAATAAGGTCTTGTGGCAGGGGTCTGTGCTTAATCCAACTTACTTGGCTCAGTGGGTTGGGCAATATTTGGAAGTTTTCCAAACATATCATTACAAGCCTCGTGTGAAGCAGAAGCGTCTGAAGACAAAATGGGAATGCCCTCCAAGTGGGAGGCTCAAAATTAATGTTGATGGGGCGTTTCGTATTGCGAATAATTGTGGAGGTATTGGGGTAGTCGTTAGAAATGATGCAGGTGTGGGAGTCGCAACTTTAGCTAGGCCTCATTTACATGCTCACTCCGCTTTGCATATGGAGGTTGAAGCGTGTAGAGCGGGTCTTTTACTTGGTATCCACCAAGGTTGGACGGATGTTGATATTGAAAGTGACTCTATCCTATTGATTACTGCCCTGAGTAGGGATGAGGAGGATTTGTCCGAGGTGGGTCGTGTCTTGGAAGATTGTAAAGCTTACATGACGGTTTTTCAGTCTATCCGGGTTCGACACATATATAGAGAAGCAAATGGTGTAGCAGATCGCTTAGCACACCTTGCTAGTGTTGGTTTTCTTGATGATGTATGGTTAGATGAGACTCCTGCTATTATTCAGGATGTACTCTATGAGGATTATAGTTATTATTCTGCTGTAGCATGGGGTTCAGGTTTTATGTCCCCCCGTTGCAAAATTTTCCTATTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008746 GO:0009060 GO:0009117 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0031967 GO:0031975 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0048046 GO:0050896 GO:0051186 GO:0051775 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

726

Amino Acids

82.58

Weight (kDa)

8.16

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	356 - 454	4.9e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	556 - 677	9.1e-21	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58330 AT5G58330 AT5G58330
fragaria_vesca	FvH4_7g06530
malus_domestica	MD02G1243100.v1.1 MD07G1073300.v1.1
prunus_persica	Prupe.2G091600_v2.0.a1
pyrus_communis	pycom02g20970 pycom07g05680
rosa_chinensis	RchiOBHm_Chr1g0334961
rosa_laevigata	RLG00000029409
rosa_multiflora	Rmu_co7973608.1_g000002 Rmu_sc0000574.1_g000062 Rmu_sc0000574.1_g000065
rosa_roxburghii	Rroxscaffold_4G00316350
rosa_rugosa	Rorug01G0118000 Rorug01G0118100
rosa_samantha	Rh1AG141400 Rh1BG108900 Rh1CG133300 Rh1DG145900 Rh1DG146000
rosa_wichuraiana	Rw1G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AarI	CACCTGC	1 cut(s)	1724
Acc36I	ACCTGC	1 cut(s)	1724
AccB1I	GGYRCC	1 cut(s)	847
AccBSI	CCGCTC	1 cut(s)	1814
AccI	GTMKAC	4 cut(s)	997, 1278, 1321, 1448
AciI	CCGC	4 cut(s)	95, 230, 1782, 1814
AclWI	GGATC	2 cut(s)	523, 914
AcsI	RAATTY	3 cut(s)	27, 1408, 2163
AcuI	CTGAAG	2 cut(s)	1397, 1643
AfiI	CCNNNNNNNGG	4 cut(s)	884, 1649, 1896, 1897
AgsI	TTSAA	6 cut(s)	121, 862, 901, 1333, 1802, 1862
AhlI	ACTAGT	1 cut(s)	1316
AjnI	CCWGG	2 cut(s)	935, 1085
Alw26I	GTCTC	4 cut(s)	92, 1006, 1295, 2063
AlwI	GGATC	2 cut(s)	523, 914
AoxI	GGCC	3 cut(s)	1369, 1485, 1760
ApaI	GGGCCC	1 cut(s)	1373
ApeKI	GCWGC	3 cut(s)	380, 952, 1166
ApoI	RAATTY	3 cut(s)	27, 1408, 2163
AseI	ATTAAT	3 cut(s)	165, 1665, 2174
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	2 cut(s)	43, 639
AspS9I	GGNCC	3 cut(s)	1369, 1370, 1485
AsuC2I	CCSGG	1 cut(s)	1976
AsuII	TTCGAA	2 cut(s)	302, 563
AsuNHI	GCTAGC	1 cut(s)	1381
BaeGI	GKGCMC	1 cut(s)	1373
BanI	GGYRCC	1 cut(s)	847
BanII	GRGCYC	1 cut(s)	1373
BauI	CACGAG	1 cut(s)	1602
BbsI	GAAGAC	1 cut(s)	1631
BbvI	GCAGC	3 cut(s)	392, 939, 1153
BccI	CCATC	5 cut(s)	63, 191, 351, 481, 1667
BceAI	ACGGC	1 cut(s)	1472
BciT130I	CCWGG	2 cut(s)	937, 1087
BciVI	GTATCC	1 cut(s)	1841
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	1976
BcoDI	GTCTC	4 cut(s)	92, 1006, 1295, 2063
BcuI	ACTAGT	1 cut(s)	1316
BfaI	CTAG	8 cut(s)	45, 993, 1098, 1128, 1317, 1382, 1758, 2034
BfmI	CTRYAG	3 cut(s)	953, 1167, 2124
BfuAI	ACCTGC	1 cut(s)	1724
BfuI	GTATCC	1 cut(s)	1841
BglI	GCCNNNNNGGC	1 cut(s)	1493
BisI	GCNGC	3 cut(s)	381, 953, 1167
BlpI	GCTNAGC	1 cut(s)	2020
BlsI	GCNGC	3 cut(s)	382, 954, 1168
Bme1390I	CCNGG	3 cut(s)	937, 1087, 1976
BmgT120I	GGNCC	3 cut(s)	1369, 1370, 1485
BmiI	GGNNCC	4 cut(s)	492, 794, 849, 1371
BmrFI	CCNGG	3 cut(s)	937, 1087, 1976
BmsI	GCATC	5 cut(s)	465, 648, 703, 1170, 1720
BmtI	GCTAGC	1 cut(s)	1385
BpiI	GAAGAC	1 cut(s)	1631
BpmI	CTGGAG	3 cut(s)	750, 1108, 1234
Bpu1102I	GCTNAGC	1 cut(s)	2020
Bpu14I	TTCGAA	2 cut(s)	302, 563
BpuEI	CTTGAG	1 cut(s)	652
BpuMI	CCSGG	1 cut(s)	1976
Bsa29I	ATCGAT	1 cut(s)	918
BsaJI	CCNNGG	2 cut(s)	1837, 1917
BsaWI	WCCGGW	1 cut(s)	844
BsaXI	ACNNNNNCTCC	2 cut(s)	1898, 1928
Bsc4I	CCNNNNNNNGG	4 cut(s)	884, 1649, 1896, 1897
Bse118I	RCCGGY	1 cut(s)	1189
Bse1I	ACTGG	3 cut(s)	284, 948, 1144
Bse3DI	GCAATG	2 cut(s)	987, 1138
BseBI	CCWGG	2 cut(s)	937, 1087
BseCI	ATCGAT	1 cut(s)	918
BseDI	CCNNGG	2 cut(s)	1837, 1917
BseGI	GGATG	9 cut(s)	362, 514, 718, 835, 1396, 1428, 1855, 1906, 2095
BseLI	CCNNNNNNNGG	4 cut(s)	884, 1649, 1896, 1897
BseMI	GCAATG	2 cut(s)	987, 1138
BseMII	CTCAG	4 cut(s)	388, 1443, 1565, 1883
BseNI	ACTGG	3 cut(s)	284, 948, 1144
BseRI	GAGGAG	3 cut(s)	323, 1469, 1919
BseSI	GKGCMC	1 cut(s)	1373
BseXI	GCAGC	3 cut(s)	392, 939, 1153
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	1371, 1487, 1762
BshNI	GGYRCC	1 cut(s)	847
BshVI	ATCGAT	1 cut(s)	918
BsiSI	CCGG	3 cut(s)	845, 1190, 1975
BslFI	GGGAC	2 cut(s)	900, 2134
BslI	CCNNNNNNNGG	4 cut(s)	884, 1649, 1896, 1897
BsmAI	GTCTC	4 cut(s)	92, 1006, 1295, 2063
BsmFI	GGGAC	2 cut(s)	900, 2134
BsmI	GAATGC	1 cut(s)	1643
BsnI	GGCC	3 cut(s)	1371, 1487, 1762
Bsp119I	TTCGAA	2 cut(s)	302, 563
Bsp120I	GGGCCC	1 cut(s)	1369
Bsp1286I	GDGCHC	1 cut(s)	1373
Bsp1407I	TGTACA	1 cut(s)	779
Bsp143I	GATC	6 cut(s)	399, 528, 915, 919, 1024, 2014
Bsp1720I	GCTNAGC	1 cut(s)	2020
BspACI	CCGC	4 cut(s)	95, 230, 1782, 1814
BspANI	GGCC	3 cut(s)	1371, 1487, 1762
BspCNI	CTCAG	4 cut(s)	387, 1444, 1564, 1884
BspDI	ATCGAT	1 cut(s)	918
BspHI	TCATGA	1 cut(s)	973
BspLI	GGNNCC	4 cut(s)	492, 794, 849, 1371
BspMAI	CTGCAG	2 cut(s)	957, 1171
BspMI	ACCTGC	1 cut(s)	1724
BspOI	GCTAGC	1 cut(s)	1385
BspPI	GGATC	2 cut(s)	523, 914
BspT104I	TTCGAA	2 cut(s)	302, 563
BspT107I	GGYRCC	1 cut(s)	847
BsrBI	CCGCTC	1 cut(s)	1814
BsrDI	GCAATG	2 cut(s)	987, 1138
BsrFI	RCCGGY	1 cut(s)	1189
BsrGI	TGTACA	1 cut(s)	779
BsrI	ACTGG	3 cut(s)	284, 948, 1144
BssAI	RCCGGY	1 cut(s)	1189
BssECI	CCNNGG	2 cut(s)	1837, 1917
BssMI	GATC	6 cut(s)	399, 528, 915, 919, 1024, 2014
BssNAI	GTATAC	1 cut(s)	998
BssSI	CACGAG	1 cut(s)	1602
BssT1I	CCWWGG	1 cut(s)	1837
Bst1107I	GTATAC	1 cut(s)	998
Bst2BI	CACGAG	1 cut(s)	1602
Bst2UI	CCWGG	2 cut(s)	937, 1087
Bst4CI	ACNGT	2 cut(s)	867, 1960
Bst6I	CTCTTC	2 cut(s)	560, 1126
BstAPI	GCANNNNNTGC	1 cut(s)	2030
BstAUI	TGTACA	1 cut(s)	779
BstBI	TTCGAA	2 cut(s)	302, 563
BstC8I	GCNNGC	1 cut(s)	1383
BstDEI	CTNAG	5 cut(s)	374, 1452, 1551, 1892, 2020
BstEII	GGTNACC	1 cut(s)	279
BstF5I	GGATG	9 cut(s)	362, 514, 718, 835, 1396, 1428, 1855, 1906, 2095
BstHHI	GCGC	2 cut(s)	43, 639
BstKTI	GATC	6 cut(s)	402, 531, 918, 922, 1027, 2017
BstMAI	GTCTC	4 cut(s)	92, 1006, 1295, 2063
BstMBI	GATC	6 cut(s)	399, 528, 915, 919, 1024, 2014
BstNI	CCWGG	2 cut(s)	937, 1087
BstNSI	RCATGY	2 cut(s)	1187, 1775
BstPI	GGTNACC	1 cut(s)	279
BstSCI	CCNGG	3 cut(s)	935, 1085, 1974
BstSFI	CTRYAG	3 cut(s)	953, 1167, 2124
BstSLI	GKGCMC	1 cut(s)	1373
BstV1I	GCAGC	3 cut(s)	392, 939, 1153
BstV2I	GAAGAC	1 cut(s)	1631
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
BstZ17I	GTATAC	1 cut(s)	998
Bsu15I	ATCGAT	1 cut(s)	918
BsuI	GTATCC	1 cut(s)	1841
BsuRI	GGCC	3 cut(s)	1371, 1487, 1762
BsuTUI	ATCGAT	1 cut(s)	918
BtsCI	GGATG	9 cut(s)	362, 514, 718, 835, 1396, 1428, 1855, 1906, 2095
BtsI	GCAGTG	1 cut(s)	475
BtsIMutI	CAGTG	4 cut(s)	382, 475, 1373, 1559
BveI	ACCTGC	1 cut(s)	1724
Cac8I	GCNNGC	1 cut(s)	1383
CciI	TCATGA	1 cut(s)	973
CfoI	GCGC	2 cut(s)	43, 639
Cfr10I	RCCGGY	1 cut(s)	1189
Cfr13I	GGNCC	3 cut(s)	1369, 1370, 1485
ClaI	ATCGAT	1 cut(s)	918
CseI	GACGC	1 cut(s)	1607
CspCI	CAANNNNNGTGG	2 cut(s)	1823, 1858
CviAII	CATG	9 cut(s)	263, 353, 599, 812, 974, 1184, 1772, 1954, 2130
DdeI	CTNAG	5 cut(s)	374, 1452, 1551, 1892, 2020
DpnI	GATC	6 cut(s)	401, 530, 917, 921, 1026, 2016
DpnII	GATC	6 cut(s)	399, 528, 915, 919, 1024, 2014
DraI	TTTAAA	1 cut(s)	1305
Eam1104I	CTCTTC	2 cut(s)	560, 1126
EarI	CTCTTC	2 cut(s)	560, 1126
EciI	GGCGGA	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	1837
Eco147I	AGGCCT	1 cut(s)	1762
Eco24I	GRGCYC	1 cut(s)	1373
Eco57I	CTGAAG	2 cut(s)	1397, 1643
Eco91I	GGTNACC	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	1369
EcoO65I	GGTNACC	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	935, 1085
EcoT14I	CCWWGG	1 cut(s)	1837
EcoT22I	ATGCAT	3 cut(s)	480, 600, 1185
EcoT38I	GRGCYC	1 cut(s)	1373
ErhI	CCWWGG	1 cut(s)	1837
FaeI	CATG	9 cut(s)	266, 356, 602, 815, 977, 1187, 1775, 1957, 2133
FaqI	GGGAC	2 cut(s)	900, 2134
FatI	CATG	9 cut(s)	262, 352, 598, 811, 973, 1183, 1771, 1953, 2129
FauI	CCCGC	1 cut(s)	1807
FauNDI	CATATG	1 cut(s)	1791
FbaI	TGATCA	1 cut(s)	399
FblI	GTMKAC	4 cut(s)	997, 1278, 1321, 1448
Fnu4HI	GCNGC	3 cut(s)	381, 953, 1167
FokI	GGATG	9 cut(s)	369, 521, 725, 842, 1383, 1435, 1862, 1913, 2102
FriOI	GRGCYC	1 cut(s)	1373
Fsp4HI	GCNGC	3 cut(s)	381, 953, 1167
FspBI	CTAG	8 cut(s)	45, 993, 1098, 1128, 1317, 1382, 1758, 2034
GlaI	GCGC	2 cut(s)	42, 638
GluI	GCNGC	3 cut(s)	381, 953, 1167
GsuI	CTGGAG	3 cut(s)	750, 1108, 1234
HaeIII	GGCC	3 cut(s)	1371, 1487, 1762
HapII	CCGG	3 cut(s)	845, 1190, 1975
HgaI	GACGC	1 cut(s)	1607
HhaI	GCGC	2 cut(s)	43, 639
Hin1II	CATG	9 cut(s)	266, 356, 602, 815, 977, 1187, 1775, 1957, 2133
Hin6I	GCGC	2 cut(s)	41, 637
HinP1I	GCGC	2 cut(s)	41, 637
HincII	GTYRAC	1 cut(s)	1113
HindII	GTYRAC	1 cut(s)	1113
HindIII	AAGCTT	2 cut(s)	1104, 1947
HinfI	GANTC	6 cut(s)	74, 656, 888, 1743, 1868, 2071
HpaII	CCGG	3 cut(s)	845, 1190, 1975
Hpy166II	GTNNAC	6 cut(s)	780, 998, 1113, 1279, 1322, 1449
Hpy188I	TCNGA	2 cut(s)	1623, 1918
Hpy188III	TCNNGA	6 cut(s)	923, 974, 1174, 1213, 2048, 2087
Hpy8I	GTNNAC	6 cut(s)	780, 998, 1113, 1279, 1322, 1449
Hpy99I	CGWCG	1 cut(s)	1263
HpyAV	CCTTC	3 cut(s)	3, 382, 895
HpyCH4III	ACNGT	2 cut(s)	867, 1960
HpyCH4IV	ACGT	1 cut(s)	1442
HpyF3I	CTNAG	5 cut(s)	374, 1452, 1551, 1892, 2020
HpySE526I	ACGT	1 cut(s)	1442
Hsp92II	CATG	9 cut(s)	266, 356, 602, 815, 977, 1187, 1775, 1957, 2133
HspAI	GCGC	2 cut(s)	41, 637
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	6 cut(s)	399, 528, 915, 919, 1024, 2014
LmnI	GCTCC	4 cut(s)	496, 731, 1408, 1456
Lsp1109I	GCAGC	3 cut(s)	392, 939, 1153
LweI	GCATC	5 cut(s)	465, 648, 703, 1170, 1720
MaeI	CTAG	8 cut(s)	45, 993, 1098, 1128, 1317, 1382, 1758, 2034
MaeII	ACGT	1 cut(s)	1442
MaeIII	GTNAC	5 cut(s)	279, 450, 1058, 1226, 1865
MalI	GATC	6 cut(s)	401, 530, 917, 921, 1026, 2016
MbiI	CCGCTC	1 cut(s)	1814
MboI	GATC	6 cut(s)	399, 528, 915, 919, 1024, 2014
MflI	RGATCY	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	1373
MlyI	GAGTC	5 cut(s)	650, 882, 1752, 1862, 2065
MmeI	TCCRAC	4 cut(s)	189, 1344, 1562, 1823
Mph1103I	ATGCAT	3 cut(s)	480, 600, 1185
MroXI	GAANNNNTTC	1 cut(s)	443
MslI	CAYNNNNRTG	3 cut(s)	138, 355, 1770
MspI	CCGG	3 cut(s)	845, 1190, 1975
MspR9I	CCNGG	3 cut(s)	937, 1087, 1976
Mva1269I	GAATGC	1 cut(s)	1643
MvaI	CCWGG	2 cut(s)	937, 1087
NciI	CCSGG	1 cut(s)	1976
NdeI	CATATG	1 cut(s)	1791
NdeII	GATC	6 cut(s)	399, 528, 915, 919, 1024, 2014
NheI	GCTAGC	1 cut(s)	1381
NlaIII	CATG	9 cut(s)	266, 356, 602, 815, 977, 1187, 1775, 1957, 2133
NlaIV	GGNNCC	4 cut(s)	492, 794, 849, 1371
NmuCI	GTSAC	2 cut(s)	1226, 1865
NsiI	ATGCAT	3 cut(s)	480, 600, 1185
NspI	RCATGY	2 cut(s)	1187, 1775
NspV	TTCGAA	2 cut(s)	302, 563
PagI	TCATGA	1 cut(s)	973
PaqCI	CACCTGC	1 cut(s)	1724
PceI	AGGCCT	1 cut(s)	1762
PctI	GAATGC	1 cut(s)	1643
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	382, 954, 1168
PleI	GAGTC	5 cut(s)	650, 882, 1751, 1862, 2065
PpsI	GAGTC	5 cut(s)	650, 882, 1751, 1862, 2065
PshBI	ATTAAT	3 cut(s)	165, 1665, 2174
PsiI	TTATAA	1 cut(s)	855
Psp6I	CCWGG	2 cut(s)	935, 1085
PspEI	GGTNACC	1 cut(s)	279
PspGI	CCWGG	2 cut(s)	935, 1085
PspN4I	GGNNCC	4 cut(s)	492, 794, 849, 1371
PspOMI	GGGCCC	1 cut(s)	1369
PspPI	GGNCC	3 cut(s)	1369, 1370, 1485
PstI	CTGCAG	2 cut(s)	957, 1171
PsuI	RGATCY	1 cut(s)	528
RseI	CAYNNNNRTG	3 cut(s)	138, 355, 1770
SatI	GCNGC	3 cut(s)	381, 953, 1167
Sau3AI	GATC	6 cut(s)	399, 528, 915, 919, 1024, 2014
Sau96I	GGNCC	3 cut(s)	1369, 1370, 1485
SchI	GAGTC	5 cut(s)	650, 882, 1752, 1862, 2065
ScrFI	CCNGG	3 cut(s)	937, 1087, 1976
SduI	GDGCHC	1 cut(s)	1373
SfaNI	GCATC	5 cut(s)	465, 648, 703, 1170, 1720
SfcI	CTRYAG	3 cut(s)	953, 1167, 2124
SfuI	TTCGAA	2 cut(s)	302, 563
SmiMI	CAYNNNNRTG	3 cut(s)	138, 355, 1770
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
SpeI	ACTAGT	1 cut(s)	1316
SseBI	AGGCCT	1 cut(s)	1762
SsiI	CCGC	4 cut(s)	95, 230, 1782, 1814
SspI	AATATT	2 cut(s)	396, 1568
SspMI	CTAG	8 cut(s)	45, 993, 1098, 1128, 1317, 1382, 1758, 2034
StuI	AGGCCT	1 cut(s)	1762
StyD4I	CCNGG	3 cut(s)	935, 1085, 1974
StyI	CCWWGG	1 cut(s)	1837
TaaI	ACNGT	2 cut(s)	867, 1960
TaiI	ACGT	1 cut(s)	1445
TaqI	TCGA	6 cut(s)	302, 447, 563, 891, 918, 1981
TatI	WGTACW	3 cut(s)	779, 1340, 2092
TfiI	GAWTC	1 cut(s)	74
TscAI	CASTG	4 cut(s)	382, 475, 1380, 1559
TseFI	GTSAC	2 cut(s)	1226, 1865
TseI	GCWGC	3 cut(s)	380, 952, 1166
Tsp45I	GTSAC	2 cut(s)	1226, 1865
TspDTI	ATGAA	4 cut(s)	17, 156, 452, 726
TspGWI	ACGGA	3 cut(s)	361, 483, 1862
TspRI	CASTG	4 cut(s)	382, 475, 1380, 1559
VspI	ATTAAT	3 cut(s)	165, 1665, 2174
XapI	RAATTY	3 cut(s)	27, 1408, 2163
XceI	RCATGY	2 cut(s)	1187, 1775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	803
XmiI	GTMKAC	4 cut(s)	997, 1278, 1321, 1448
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	8 cut(s)	45, 993, 1098, 1128, 1317, 1382, 1758, 2034
Zsp2I	ATGCAT	3 cut(s)	480, 600, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.