Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0008337

Physical Location & Seq

Genomic Coordinates Reverse (-)

30657391 .. 30658301

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG146000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCAGTAGCAGAGCTCTCAACCCCTTCATTCATCAACACCCGCCTTGTTCACCCATCCAAGCTCTCCTTCTCAACCACCCATCTCCACTCTCACCGCCGTCTTGCTTTTCCACCTCTCTCTCGCACCCATAATGCTAGAATCTCTTGCTCTCTTGCACCCAATCAAGTTCAAGCTCCTGCTCCTGCGCAAACTGAAGAGCCCAAGAACAAGCCCGAGTGTTATGGCGTGTTTTGCCTCACCTATGATCTCAAAGCTGAAGAAGAGACAAAATCCTGGAAGAAATTAATTAATGTTGCGGTCTCAGGTGCAGCTGGAATGATTTCTAATCATCTACTGTTCAAAGTAAGTGTTTGTTGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008746 GO:0009060 GO:0009117 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0031967 GO:0031975 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0048046 GO:0050896 GO:0051186 GO:0051775 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

121

Amino Acids

13.32

Weight (kDa)

9.12

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58330 AT5G58330 AT5G58330
fragaria_vesca	FvH4_7g06530
malus_domestica	MD02G1243100.v1.1 MD07G1073300.v1.1
prunus_persica	Prupe.2G091600_v2.0.a1
pyrus_communis	pycom02g20970 pycom07g05680
rosa_chinensis	RchiOBHm_Chr1g0334961
rosa_laevigata	RLG00000029409
rosa_multiflora	Rmu_co7973608.1_g000002 Rmu_sc0000574.1_g000062 Rmu_sc0000574.1_g000065
rosa_roxburghii	Rroxscaffold_4G00316350
rosa_rugosa	Rorug01G0118000 Rorug01G0118100
rosa_samantha	Rh1AG141400 Rh1BG108900 Rh1CG133300 Rh1DG145900 Rh1DG146000
rosa_wichuraiana	Rw1G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	189
AciI	CCGC	3 cut(s)	43, 97, 299
AcuI	CTGAAG	2 cut(s)	216, 279
AgsI	TTSAA	2 cut(s)	173, 343
AjnI	CCWGG	1 cut(s)	275
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	5 cut(s)	16, 64, 176, 257, 314
AluI	AGCT	5 cut(s)	16, 64, 176, 257, 314
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	2 cut(s)	260, 307
Ama87I	CYCGRG	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	311
AseI	ATTAAT	2 cut(s)	287, 291
Asp700I	GAANNNNTTC	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	190
AsuHPI	GGTGA	3 cut(s)	44, 86, 232
AvaI	CYCGRG	1 cut(s)	215
BanII	GRGCYC	2 cut(s)	18, 204
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	2 cut(s)	64, 90
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	260, 307
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	277
BsaI	GGTCTC	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	18
BsiHKCI	CYCGRG	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	260, 307
Bso31I	GGTCTC	1 cut(s)	307
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	18, 204
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	3 cut(s)	43, 97, 299
BspCNI	CTCAG	1 cut(s)	317
BspQI	GCTCTTC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	307
BssMI	GATC	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	339
Bst6I	CTCTTC	2 cut(s)	192, 258
BstDEI	CTNAG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	2 cut(s)	260, 307
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	190
CviJI	RGCY	7 cut(s)	16, 64, 176, 202, 214, 257, 314
CviKI_1	RGCY	7 cut(s)	16, 64, 176, 202, 214, 257, 314
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eam1104I	CTCTTC	2 cut(s)	192, 258
EarI	CTCTTC	2 cut(s)	192, 258
Ecl136II	GAGCTC	1 cut(s)	16
Eco24I	GRGCYC	2 cut(s)	18, 204
Eco31I	GGTCTC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	216, 279
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	275
EcoT38I	GRGCYC	2 cut(s)	18, 204
FaiI	YATR	3 cut(s)	132, 225, 246
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	2 cut(s)	18, 204
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	138
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	312
HhaI	GCGC	1 cut(s)	190
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	1 cut(s)	141
HphI	GGTGA	3 cut(s)	44, 86, 232
Hpy166II	GTNNAC	1 cut(s)	52
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	36, 79
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	158, 311, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	247
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	181, 187
LpnPI	CCDG	6 cut(s)	192, 198, 262, 289, 291, 300
Lsp1109I	GCAGC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	138
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	4 cut(s)	209, 272, 275, 292
MhlI	GDGCHC	2 cut(s)	18, 204
MluCI	AATT	2 cut(s)	284, 288
MnlI	CCTC	2 cut(s)	126, 248
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	2 cut(s)	287, 291
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeII	GATC	1 cut(s)	247
NsbI	TGCGCA	1 cut(s)	189
PacI	TTAATTAA	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	141
PfoI	TCCNGGA	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	313
PshBI	ATTAAT	2 cut(s)	287, 291
Psp124BI	GAGCTC	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PvuII	CAGCTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	18
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	287, 291
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	18, 204
SetI	ASST	8 cut(s)	18, 66, 118, 178, 245, 259, 310, 316
Sse9I	AATT	2 cut(s)	284, 288
SsiI	CCGC	3 cut(s)	43, 97, 299
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	339
TasI	AATT	2 cut(s)	284, 288
TfiI	GAWTC	1 cut(s)	141
Tru1I	TTAA	2 cut(s)	287, 291
Tru9I	TTAA	2 cut(s)	287, 291
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	18, 22
VspI	ATTAAT	2 cut(s)	287, 291
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.