FvH4_7g08721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016386
Physical Location & Seq
Forward (+)
8551022 .. 8552493
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08721.t1

Sequence Viewer

Length: 1158 bp
ATGTGCGCTGCAGTTCAGACGCTTGTGTGTGTGAAACAAGTGAAACAAGATGTTGCAGAAGAGTGGGATGAGACCATGCCATTGCCTGGGGACATAATCGAAGGCTTTTACAATTGTGAGAGTAATATTCATGCTGATGAGTTTTTTGTGCCCACTAAAGCCAAGTCTGAACTTAGTTCACAACTTGCTAAGATAAACAGCCAACATATAGAGGTCATATGGGTCAAGGTTAGAAGGGGTGATGCGACTCTCAAGCTCCGGGCGCGTGTTGTGGTGGAGAGGCCTTCCATGCTTCAAAGAAAGTATAGCATTAGAGCAGCTACAGATGACAGACATGTTGCAGTCATAGGGGACTTGACCTCGGATGAATGCACTGAGCTGCAAGAAATGAGCAGGAGTTTGGTAAATGTGGAAAATAGAGGGTATCACAAAAAGGGAGTAAAATATGACTGGAAAATGAAAGTAAGCAAGTATTTGCCTGACCACCGTTGCACGGTTGTTAGCTCTATTCTGTTCATGCCAATGCAGGGTGAGCATTGCACTGAGGCCACAACAGCAAGGTGCATGGCTTGGTTTTCTGCAGCAGTTTCTTCAGGGGCTCCTCTTGTTTTTGTTAATATTCAAACCGAACAGATTGTGACATCGGAGAAAACTAATTTAACAGGAAAGGAAATGAGTTGGAGTAAACAGCAACAAAACCATGCAACGACGGTCCAAATAGTCCAGGGCATAAGACTCTGGTTTATGCCTGGAGTTGCAGAAGTGTCGCTTGATTTGGTACCCCAAACCGGTGAAGTCCGATTCGGATTGGACATCAAACGGACTGAAGAGGGATTGATATGCATCTACTCAGTTGCAAAGGGATCACCAGCAGACCGAGCAGGGCTTAGCAAGCTTCATGAGAAAGCATATGCAAATGGTTACCTTCTTGTGATGTCCAGACTAGAGGGAAAGAGCCTAATGCCTTCGCATGCCGACATTTCTGGGCTCATTCACTGTTGCGATCACACCGAAATCAAGGACACTCTAGTCTCGGCGATAGACCAGATGGAGAGAATTCAACTTCATGTTATGGCGTGGTCTAACCAAGCACGTCCTACTAGTACTCCCAATACCACAGCAGTTGGTTCCACAATGCTACGCCCAAGACCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

386

Amino Acids

43.02

Weight (kDa)

7.17

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08721
malus_domestica MD08G1069400.v1.1 MD15G1052700.v1.1
prunus_persica Prupe.1G406600_v2.0.a1
pyrus_communis pycom08g05720
rosa_chinensis RchiOBHm_Chr1g0343961
rosa_laevigata RLG00000028943
rosa_multiflora Rmu_ssc0000434.1_g000040
rosa_roxburghii Rroxscaffold_4G00310210
rosa_rugosa Rorug01G0170000
rosa_samantha Rh1AG186600 Rh1BG153000 Rh1CG172000 Rh1DG185300
rosa_wichuraiana Rw1G015390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1028
Acc65I GGTACC 1 cut(s) 778
AccB1I GGYRCC 1 cut(s) 778
AccB7I CCANNNNNTGG 1 cut(s) 86
AccII CGCG 1 cut(s) 265
AclWI GGATC 1 cut(s) 871
AcsI RAATTY 1 cut(s) 1056
AcuI CTGAAG 2 cut(s) 576, 846
AfaI GTAC 2 cut(s) 780, 1105
AfiI CCNNNNNNNGG 4 cut(s) 86, 493, 527, 788
AflIII ACRYGT 1 cut(s) 334
AgeI ACCGGT 1 cut(s) 788
AgsI TTSAA 3 cut(s) 296, 623, 1061
AhlI ACTAGT 1 cut(s) 1100
AjiI CACGTC 1 cut(s) 1094
AjnI CCWGG 3 cut(s) 85, 723, 748
AluBI AGCT 5 cut(s) 256, 320, 379, 504, 895
AluI AGCT 5 cut(s) 256, 320, 379, 504, 895
Alw26I GTCTC 2 cut(s) 65, 1036
AlwI GGATC 1 cut(s) 871
AoxI GGCC 2 cut(s) 281, 546
ApeKI GCWGC 4 cut(s) 8, 317, 379, 581
ApoI RAATTY 1 cut(s) 1056
AsiGI ACCGGT 1 cut(s) 788
Asp718I GGTACC 1 cut(s) 778
AspLEI GCGC 2 cut(s) 8, 265
AspS9I GGNCC 1 cut(s) 712
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 4 cut(s) 251, 542, 803, 858
AvaII GGWCC 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 153
BanI GGYRCC 1 cut(s) 778
BanII GRGCYC 2 cut(s) 601, 990
BbvI GCAGC 3 cut(s) 329, 366, 593
BccI CCATC 1 cut(s) 1042
BcgI CGANNNNNNTGC 2 cut(s) 747, 781
BciT130I CCWGG 3 cut(s) 87, 725, 750
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 2 cut(s) 65, 1036
BcuI ACTAGT 1 cut(s) 1100
BfaI CTAG 3 cut(s) 944, 1028, 1101
BfmI CTRYAG 3 cut(s) 9, 321, 579
BisI GCNGC 4 cut(s) 9, 318, 380, 582
BlpI GCTNAGC 1 cut(s) 887
BlsI GCNGC 4 cut(s) 10, 319, 381, 583
BmcAI AGTACT 1 cut(s) 1105
Bme1390I CCNGG 4 cut(s) 87, 260, 725, 750
Bme18I GGWCC 1 cut(s) 712
BmgBI CACGTC 1 cut(s) 1094
BmgT120I GGNCC 1 cut(s) 712
BmiI GGNNCC 3 cut(s) 600, 780, 1129
BmrFI CCNGG 4 cut(s) 87, 260, 725, 750
BmsI GCATC 2 cut(s) 232, 852
BpmI CTGGAG 1 cut(s) 771
Bpu1102I GCTNAGC 1 cut(s) 887
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 842
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 86, 360, 724
BsaWI WCCGGW 1 cut(s) 788
BsaXI ACNNNNNCTCC 2 cut(s) 1090, 1120
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 493, 527, 788
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 1 cut(s) 455
Bse3DI GCAATG 2 cut(s) 80, 535
Bse8I GATNNNNATC 1 cut(s) 842
BseBI CCWGG 3 cut(s) 87, 725, 750
BseDI CCNNGG 3 cut(s) 86, 360, 724
BseGI GGATG 2 cut(s) 73, 370
BseJI GATNNNNATC 1 cut(s) 842
BseLI CCNNNNNNNGG 4 cut(s) 86, 493, 527, 788
BseMI GCAATG 2 cut(s) 80, 535
BseMII CTCAG 3 cut(s) 366, 534, 864
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 591
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 3 cut(s) 329, 366, 593
Bsh1236I CGCG 1 cut(s) 265
BshFI GGCC 2 cut(s) 283, 548
BshNI GGYRCC 1 cut(s) 778
BshTI ACCGGT 1 cut(s) 788
BsiSI CCGG 2 cut(s) 259, 789
BslFI GGGAC 2 cut(s) 104, 365
BslI CCNNNNNNNGG 4 cut(s) 86, 493, 527, 788
BsmAI GTCTC 2 cut(s) 65, 1036
BsmFI GGGAC 2 cut(s) 104, 365
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 2 cut(s) 283, 548
Bso31I GGTCTC 1 cut(s) 65
Bsp1286I GDGCHC 3 cut(s) 153, 601, 990
Bsp143I GATC 2 cut(s) 863, 1003
Bsp1720I GCTNAGC 1 cut(s) 887
BspANI GGCC 2 cut(s) 283, 548
BspCNI CTCAG 3 cut(s) 367, 535, 863
BspFNI CGCG 1 cut(s) 265
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 3 cut(s) 600, 780, 1129
BspMAI CTGCAG 2 cut(s) 13, 583
BspPI GGATC 1 cut(s) 871
BspT107I GGYRCC 1 cut(s) 778
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 2 cut(s) 80, 535
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 1 cut(s) 455
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 3 cut(s) 86, 360, 724
BssMI GATC 2 cut(s) 863, 1003
Bst2UI CCWGG 3 cut(s) 87, 725, 750
Bst4CI ACNGT 4 cut(s) 488, 496, 712, 998
Bst6I CTCTTC 2 cut(s) 54, 822
BstC8I GCNNGC 2 cut(s) 893, 972
BstDEI CTNAG 6 cut(s) 173, 189, 375, 543, 850, 887
BstEII GGTNACC 1 cut(s) 920
BstF5I GGATG 2 cut(s) 73, 370
BstFNI CGCG 1 cut(s) 265
BstHHI GCGC 2 cut(s) 8, 265
BstKTI GATC 2 cut(s) 866, 1006
BstMAI GTCTC 2 cut(s) 65, 1036
BstMBI GATC 2 cut(s) 863, 1003
BstMWI GCNNNNNNNGC 6 cut(s) 262, 289, 532, 554, 878, 892
BstNI CCWGG 3 cut(s) 87, 725, 750
BstNSI RCATGY 2 cut(s) 338, 974
BstPI GGTNACC 1 cut(s) 920
BstSCI CCNGG 4 cut(s) 85, 258, 723, 748
BstSFI CTRYAG 3 cut(s) 9, 321, 579
BstSLI GKGCMC 1 cut(s) 153
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 3 cut(s) 329, 366, 593
BsuRI GGCC 2 cut(s) 283, 548
BtrI CACGTC 1 cut(s) 1094
BtsCI GGATG 2 cut(s) 73, 370
BtsIMutI CAGTG 3 cut(s) 372, 540, 994
Cac8I GCNNGC 2 cut(s) 893, 972
CciI TCATGA 1 cut(s) 898
CfoI GCGC 2 cut(s) 8, 265
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 1 cut(s) 712
CseI GACGC 1 cut(s) 28
Csp6I GTAC 2 cut(s) 779, 1104
CspAI ACCGGT 1 cut(s) 788
CspCI CAANNNNNGTGG 2 cut(s) 1105, 1140
CviQI GTAC 2 cut(s) 779, 1104
DdeI CTNAG 6 cut(s) 173, 189, 375, 543, 850, 887
DpnI GATC 2 cut(s) 865, 1005
DpnII GATC 2 cut(s) 863, 1003
DrdI GACNNNNNNGTC 1 cut(s) 1028
DseDI GACNNNNNNGTC 1 cut(s) 1028
Eam1104I CTCTTC 2 cut(s) 54, 822
EarI CTCTTC 2 cut(s) 54, 822
Eco147I AGGCCT 1 cut(s) 283
Eco24I GRGCYC 2 cut(s) 601, 990
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 712
Eco57I CTGAAG 2 cut(s) 576, 846
Eco91I GGTNACC 1 cut(s) 920
EcoO65I GGTNACC 1 cut(s) 920
EcoRI GAATTC 1 cut(s) 1056
EcoRII CCWGG 3 cut(s) 85, 723, 748
EcoT22I ATGCAT 1 cut(s) 845
EcoT38I GRGCYC 2 cut(s) 601, 990
FalI AAGNNNNNCTT 2 cut(s) 753, 785
FaqI GGGAC 2 cut(s) 104, 365
FauNDI CATATG 2 cut(s) 218, 910
Fnu4HI GCNGC 4 cut(s) 9, 318, 380, 582
FokI GGATG 2 cut(s) 80, 377
FriOI GRGCYC 2 cut(s) 601, 990
Fsp4HI GCNGC 4 cut(s) 9, 318, 380, 582
FspBI CTAG 3 cut(s) 944, 1028, 1101
GlaI GCGC 2 cut(s) 7, 264
GluI GCNGC 4 cut(s) 9, 318, 380, 582
GsuI CTGGAG 1 cut(s) 771
HaeIII GGCC 2 cut(s) 283, 548
HapII CCGG 2 cut(s) 259, 789
HgaI GACGC 1 cut(s) 28
HhaI GCGC 2 cut(s) 8, 265
Hin6I GCGC 2 cut(s) 6, 263
HinP1I GCGC 2 cut(s) 6, 263
HindIII AAGCTT 1 cut(s) 893
HinfI GANTC 3 cut(s) 247, 735, 801
HpaII CCGG 2 cut(s) 259, 789
HphI GGTGA 4 cut(s) 251, 542, 803, 858
Hpy166II GTNNAC 2 cut(s) 179, 686
Hpy188I TCNGA 6 cut(s) 18, 169, 364, 646, 800, 806
Hpy188III TCNNGA 2 cut(s) 899, 939
Hpy8I GTNNAC 2 cut(s) 179, 686
Hpy99I CGWCG 1 cut(s) 712
HpyAV CCTTC 5 cut(s) 95, 228, 294, 935, 975
HpyCH4III ACNGT 4 cut(s) 488, 496, 712, 998
HpyCH4IV ACGT 1 cut(s) 1093
HpyF10VI GCNNNNNNNGC 6 cut(s) 262, 289, 532, 554, 878, 892
HpyF3I CTNAG 6 cut(s) 173, 189, 375, 543, 850, 887
HpySE526I ACGT 1 cut(s) 1093
HspAI GCGC 2 cut(s) 6, 263
KpnI GGTACC 1 cut(s) 782
Kzo9I GATC 2 cut(s) 863, 1003
LmnI GCTCC 2 cut(s) 261, 604
Lsp1109I GCAGC 3 cut(s) 329, 366, 593
LweI GCATC 2 cut(s) 232, 852
MaeI CTAG 3 cut(s) 944, 1028, 1101
MaeII ACGT 1 cut(s) 1093
MaeIII GTNAC 2 cut(s) 637, 920
MalI GATC 2 cut(s) 865, 1005
MboI GATC 2 cut(s) 863, 1003
MboII GAAGA 3 cut(s) 71, 582, 839
MfeI CAATTG 1 cut(s) 112
MhlI GDGCHC 3 cut(s) 153, 601, 990
MluCI AATT 3 cut(s) 112, 655, 1056
MlyI GAGTC 2 cut(s) 241, 729
MmeI TCCRAC 1 cut(s) 659
MnlI CCTC 8 cut(s) 205, 273, 370, 413, 538, 612, 823, 940
Mph1103I ATGCAT 1 cut(s) 845
MseI TTAA 2 cut(s) 615, 659
MslI CAYNNNNRTG 2 cut(s) 135, 521
MspI CCGG 2 cut(s) 259, 789
MspR9I CCNGG 4 cut(s) 87, 260, 725, 750
MunI CAATTG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 3 cut(s) 87, 725, 750
MvnI CGCG 1 cut(s) 265
MwoI GCNNNNNNNGC 6 cut(s) 262, 289, 532, 554, 878, 892
NciI CCSGG 1 cut(s) 260
NdeI CATATG 2 cut(s) 218, 910
NdeII GATC 2 cut(s) 863, 1003
NlaIV GGNNCC 3 cut(s) 600, 780, 1129
NmeAIII GCCGAG 1 cut(s) 1013
NmuCI GTSAC 1 cut(s) 637
NsiI ATGCAT 1 cut(s) 845
NspI RCATGY 2 cut(s) 338, 974
PaeI GCATGC 1 cut(s) 974
PagI TCATGA 1 cut(s) 898
PceI AGGCCT 1 cut(s) 283
PciI ACATGT 1 cut(s) 334
PctI GAATGC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 801
PflMI CCANNNNNTGG 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 788
PkrI GCNGC 4 cut(s) 10, 319, 381, 583
PleI GAGTC 2 cut(s) 241, 729
PpsI GAGTC 2 cut(s) 241, 729
PscI ACATGT 1 cut(s) 334
Psp6I CCWGG 3 cut(s) 85, 723, 748
PspEI GGTNACC 1 cut(s) 920
PspGI CCWGG 3 cut(s) 85, 723, 748
PspN4I GGNNCC 3 cut(s) 600, 780, 1129
PspPI GGNCC 1 cut(s) 712
PstI CTGCAG 2 cut(s) 13, 583
RsaI GTAC 2 cut(s) 780, 1105
RsaNI GTAC 2 cut(s) 779, 1104
RseI CAYNNNNRTG 2 cut(s) 135, 521
SaqAI TTAA 2 cut(s) 615, 659
SatI GCNGC 4 cut(s) 9, 318, 380, 582
Sau3AI GATC 2 cut(s) 863, 1003
Sau96I GGNCC 1 cut(s) 712
ScaI AGTACT 1 cut(s) 1105
SchI GAGTC 2 cut(s) 241, 729
ScrFI CCNGG 4 cut(s) 87, 260, 725, 750
SduI GDGCHC 3 cut(s) 153, 601, 990
SfaNI GCATC 2 cut(s) 232, 852
SfcI CTRYAG 3 cut(s) 9, 321, 579
SinI GGWCC 1 cut(s) 712
SmiMI CAYNNNNRTG 2 cut(s) 135, 521
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
SpeI ACTAGT 1 cut(s) 1100
SphI GCATGC 1 cut(s) 974
Sse9I AATT 3 cut(s) 112, 655, 1056
SseBI AGGCCT 1 cut(s) 283
SspI AATATT 2 cut(s) 127, 619
SspMI CTAG 3 cut(s) 944, 1028, 1101
StuI AGGCCT 1 cut(s) 283
StyD4I CCNGG 4 cut(s) 85, 258, 723, 748
TaaI ACNGT 4 cut(s) 488, 496, 712, 998
TaiI ACGT 1 cut(s) 1096
TaqI TCGA 1 cut(s) 99
TaqII GACCGA 1 cut(s) 891
TasI AATT 3 cut(s) 112, 655, 1056
TatI WGTACW 1 cut(s) 1103
TfiI GAWTC 1 cut(s) 801
Tru1I TTAA 2 cut(s) 615, 659
Tru9I TTAA 2 cut(s) 615, 659
TscAI CASTG 3 cut(s) 379, 547, 1001
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 4 cut(s) 8, 317, 379, 581
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 6 cut(s) 119, 381, 473, 505, 887, 1055
TspGWI ACGGA 1 cut(s) 835
TspRI CASTG 3 cut(s) 379, 547, 1001
Van91I CCANNNNNTGG 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 712
XapI RAATTY 1 cut(s) 1056
XceI RCATGY 2 cut(s) 338, 974
XspI CTAG 3 cut(s) 944, 1028, 1101
ZrmI AGTACT 1 cut(s) 1105
Zsp2I ATGCAT 1 cut(s) 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.