Prupe.1G406600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016386
Physical Location & Seq
Forward (+)
35703533 .. 35705136
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G406600.1

Sequence Viewer

Length: 1128 bp
ATGGCCGGTGCTCAGACACTGGTGTGTGTGAAACAAGTGAAGCAAGAGGAACCAGAAGAGTGGGATGAGAGCATGCCATTGCCTGGAGATATAATTGAAGGGTTTTATAATTCTGAGAGTAGTGATACTATTGCTGATGAGTTTTTTGTGCATACCAAAGCCAAGTCAGAGCTTACCTCACAGCTTGCTAAGTTCAGCCATGTTGAGGTCATTTGGGTCAAGGTGAGAAGGGGTGAGAGCACACTCAAGCTCCAGACCCGTGTCGTGGCTGAGAGGATTTCGATGCTTCAGAGAAGGTATACCATTAGAGCAGCTACAGATGACAGACATGTTGCAATTTTGGGGGACTTGACCTCAGACCAATGTTCTGAGCTTCAGGAATTGAGCAGGAGTTTGGTAAACGTGGAGTACAGAGGATATAACAAAAGGGGAGTTAAATATGACTGGAAGATGAAAGTTGGTACCTATTTGCCTGACCAACGTTGCACAATTGTTAGCTCCATTTTGTTCATGCCACTGCCAGGCGAGAAATGCACTGAGGCCACAACAGCCAGGTGCATGGCTTGGTTTTCTGCAGCAGTTGCTTCAGGGGTTCCTCTTGTTTTTGTTAATATTCAAACAGAACAGATCGTGTCGTCGGAGAAGAATAATTTGATAGGAAAGGATATGAGTTGGGGTAGGCAGCAAAATTACACAACAACAACAACAACAGTCCAAATAGTGCAAGGCATTAGACTGTGGTTCATGCCCGGAGCTGCAGAAATGCTAGTTGACTTGATACCTCAACCTGGTGAAGCGCGGTTCGGATTGGAAATCAAACGCACTGACGAGGGACTGATTTGCATTCACTCAGTGGCAAAAGGTTCAGCTGCTGATCGTTGTGGTCTTGGCAGCCTTCATGAGGAAGCATACGCAAGTGGCCGCCAGCTTGTGATGTCTAGGTTAGAGGGCAAGAGCTTGATGCCATCACATGTTAGCTCTGCGGGGCTCATACACTGTTGTGATCACACAGAAATTAAAGAAACTCTTGCGTCGGCCATTGACCAGATGGAAAGCGTTCAGCTTCACCTCATGGCCTGGTCTAACCATTTACTTCCCATTGCTCCGAAAGCTGTTGGCGCCACAACA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

41.73

Weight (kDa)

5.97

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08721
malus_domestica MD08G1069400.v1.1 MD15G1052700.v1.1
prunus_persica Prupe.1G406600_v2.0.a1
pyrus_communis pycom08g05720
rosa_chinensis RchiOBHm_Chr1g0343961
rosa_laevigata RLG00000028943
rosa_multiflora Rmu_ssc0000434.1_g000040
rosa_roxburghii Rroxscaffold_4G00310210
rosa_rugosa Rorug01G0170000
rosa_samantha Rh1AG186600 Rh1BG153000 Rh1CG172000 Rh1DG185300
rosa_wichuraiana Rw1G015390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
Acc65I GGTACC 1 cut(s) 461
AccB1I GGYRCC 2 cut(s) 461, 1118
AccB7I CCANNNNNTGG 1 cut(s) 83
AccI GTMKAC 1 cut(s) 299
AccII CGCG 1 cut(s) 799
AciI CCGC 3 cut(s) 799, 922, 983
AclI AACGTT 1 cut(s) 481
AcoI YGGCCR 3 cut(s) 3, 919, 1035
AcuI CTGAAG 3 cut(s) 272, 359, 570
AcyI GRCGYC 1 cut(s) 1119
AdeI CACNNNGTG 1 cut(s) 853
AfaI GTAC 2 cut(s) 410, 463
AfiI CCNNNNNNNGG 6 cut(s) 83, 205, 265, 521, 788, 901
AflIII ACRYGT 2 cut(s) 328, 970
AgsI TTSAA 2 cut(s) 98, 617
AjnI CCWGG 5 cut(s) 82, 520, 551, 787, 1076
AleI CACNNNNGTG 2 cut(s) 22, 999
Alw21I GWGCWC 2 cut(s) 13, 242
AlwNI CAGNNNCTG 2 cut(s) 19, 872
AoxI GGCC 5 cut(s) 3, 540, 919, 1035, 1074
ApeKI GCWGC 6 cut(s) 311, 575, 682, 755, 869, 891
Asp700I GAANNNNTTC 1 cut(s) 1056
Asp718I GGTACC 1 cut(s) 461
AspLEI GCGC 2 cut(s) 799, 1121
AsuC2I CCSGG 1 cut(s) 750
AsuHPI GGTGA 4 cut(s) 235, 245, 803, 1058
BanI GGYRCC 2 cut(s) 461, 1118
BanII GRGCYC 1 cut(s) 990
Bbv12I GWGCWC 2 cut(s) 13, 242
BbvI GCAGC 6 cut(s) 323, 587, 694, 742, 856, 903
BccI CCATC 2 cut(s) 973, 1042
BciT130I CCWGG 5 cut(s) 84, 522, 553, 789, 1078
BclI TGATCA 1 cut(s) 1003
BcnI CCSGG 1 cut(s) 750
BfaI CTAG 2 cut(s) 767, 939
BfmI CTRYAG 3 cut(s) 315, 573, 756
BfoI RGCGCY 1 cut(s) 1122
BisI GCNGC 7 cut(s) 312, 576, 683, 756, 870, 892, 922
BlsI GCNGC 7 cut(s) 313, 577, 684, 757, 871, 893, 923
Bme1390I CCNGG 6 cut(s) 84, 522, 553, 750, 789, 1078
BmiI GGNNCC 4 cut(s) 51, 463, 594, 1120
BmrFI CCNGG 6 cut(s) 84, 522, 553, 750, 789, 1078
BmsI GCATC 2 cut(s) 273, 951
BoxI GACNNNNGTC 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 2 cut(s) 105, 236
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 750
BsaHI GRCGYC 1 cut(s) 1119
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 6 cut(s) 83, 205, 265, 521, 788, 901
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 2 cut(s) 24, 449
Bse3DI GCAATG 2 cut(s) 77, 1098
BseBI CCWGG 5 cut(s) 84, 522, 553, 789, 1078
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 6 cut(s) 83, 205, 265, 521, 788, 901
BseMI GCAATG 2 cut(s) 77, 1098
BseMII CTCAG 7 cut(s) 26, 105, 261, 360, 369, 528, 864
BseNI ACTGG 2 cut(s) 24, 449
BseXI GCAGC 6 cut(s) 323, 587, 694, 742, 856, 903
Bsh1236I CGCG 1 cut(s) 799
BshFI GGCC 5 cut(s) 5, 542, 921, 1037, 1076
BshNI GGYRCC 2 cut(s) 461, 1118
BsiHKAI GWGCWC 2 cut(s) 13, 242
BsiSI CCGG 2 cut(s) 6, 750
BslFI GGGAC 2 cut(s) 359, 846
BslI CCNNNNNNNGG 6 cut(s) 83, 205, 265, 521, 788, 901
BsmFI GGGAC 2 cut(s) 359, 846
BsmI GAATGC 1 cut(s) 843
BsnI GGCC 5 cut(s) 5, 542, 921, 1037, 1076
Bsp1286I GDGCHC 3 cut(s) 13, 242, 990
Bsp143I GATC 3 cut(s) 627, 874, 1003
BspACI CCGC 3 cut(s) 799, 922, 983
BspANI GGCC 5 cut(s) 5, 542, 921, 1037, 1076
BspCNI CTCAG 7 cut(s) 25, 106, 262, 361, 368, 529, 863
BspFNI CGCG 1 cut(s) 799
BspHI TCATGA 1 cut(s) 898
BspLI GGNNCC 4 cut(s) 51, 463, 594, 1120
BspMAI CTGCAG 2 cut(s) 577, 760
BspT107I GGYRCC 2 cut(s) 461, 1118
BsrDI GCAATG 2 cut(s) 77, 1098
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 2 cut(s) 24, 449
BssAI RCCGGY 1 cut(s) 5
BssMI GATC 3 cut(s) 627, 874, 1003
BssNAI GTATAC 1 cut(s) 300
BssNI GRCGYC 1 cut(s) 1119
Bst1107I GTATAC 1 cut(s) 300
Bst2UI CCWGG 5 cut(s) 84, 522, 553, 789, 1078
Bst4CI ACNGT 3 cut(s) 712, 738, 998
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 1119
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 3 cut(s) 74, 186, 926
BstDEI CTNAG 8 cut(s) 12, 114, 189, 270, 355, 369, 537, 850
BstENI CCTNNNNNAGG 1 cut(s) 899
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 799
BstH2I RGCGCY 1 cut(s) 1122
BstHHI GCGC 2 cut(s) 799, 1121
BstKTI GATC 3 cut(s) 630, 877, 1006
BstMBI GATC 3 cut(s) 627, 874, 1003
BstMWI GCNNNNNNNGC 5 cut(s) 531, 548, 581, 1109, 1118
BstNI CCWGG 5 cut(s) 84, 522, 553, 789, 1078
BstNSI RCATGY 3 cut(s) 76, 332, 974
BstPAI GACNNNNGTC 1 cut(s) 260
BstSCI CCNGG 6 cut(s) 82, 520, 551, 748, 787, 1076
BstSFI CTRYAG 3 cut(s) 315, 573, 756
BstUI CGCG 1 cut(s) 799
BstV1I GCAGC 6 cut(s) 323, 587, 694, 742, 856, 903
BstXI CCANNNNNNTGG 2 cut(s) 60, 559
BstZ17I GTATAC 1 cut(s) 300
BsuRI GGCC 5 cut(s) 5, 542, 921, 1037, 1076
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 515
BtsIMutI CAGTG 6 cut(s) 17, 515, 534, 822, 858, 994
Cac8I GCNNGC 3 cut(s) 74, 186, 926
CaiI CAGNNNCTG 2 cut(s) 19, 872
CciI TCATGA 1 cut(s) 898
CfoI GCGC 2 cut(s) 799, 1121
Cfr10I RCCGGY 1 cut(s) 5
CseI GACGC 1 cut(s) 1020
CsiI ACCWGGT 1 cut(s) 787
Csp6I GTAC 2 cut(s) 409, 462
CviAII CATG 9 cut(s) 73, 200, 329, 511, 559, 745, 899, 971, 1072
CviQI GTAC 2 cut(s) 409, 462
DdeI CTNAG 8 cut(s) 12, 114, 189, 270, 355, 369, 537, 850
DinI GGCGCC 1 cut(s) 1120
DpnI GATC 3 cut(s) 629, 876, 1005
DpnII GATC 3 cut(s) 627, 874, 1003
DraIII CACNNNGTG 1 cut(s) 853
EaeI YGGCCR 3 cut(s) 3, 919, 1035
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 990
Eco57I CTGAAG 3 cut(s) 272, 359, 570
EcoNI CCTNNNNNAGG 1 cut(s) 899
EcoRII CCWGG 5 cut(s) 82, 520, 551, 787, 1076
EcoT38I GRGCYC 1 cut(s) 990
EgeI GGCGCC 1 cut(s) 1120
EheI GGCGCC 1 cut(s) 1120
FaeI CATG 9 cut(s) 76, 203, 332, 514, 562, 748, 902, 974, 1075
FalI AAGNNNNNCTT 2 cut(s) 1011, 1043
FaqI GGGAC 2 cut(s) 359, 846
FatI CATG 9 cut(s) 72, 199, 328, 510, 558, 744, 898, 970, 1071
FauI CCCGC 1 cut(s) 976
FbaI TGATCA 1 cut(s) 1003
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 7 cut(s) 312, 576, 683, 756, 870, 892, 922
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 990
Fsp4HI GCNGC 7 cut(s) 312, 576, 683, 756, 870, 892, 922
FspBI CTAG 2 cut(s) 767, 939
GlaI GCGC 2 cut(s) 798, 1120
GluI GCNGC 7 cut(s) 312, 576, 683, 756, 870, 892, 922
GsuI CTGGAG 2 cut(s) 105, 236
HaeII RGCGCY 1 cut(s) 1122
HaeIII GGCC 5 cut(s) 5, 542, 921, 1037, 1076
HapII CCGG 2 cut(s) 6, 750
HgaI GACGC 1 cut(s) 1020
HhaI GCGC 2 cut(s) 799, 1121
Hin1I GRCGYC 1 cut(s) 1119
Hin1II CATG 9 cut(s) 76, 203, 332, 514, 562, 748, 902, 974, 1075
Hin6I GCGC 2 cut(s) 797, 1119
HinP1I GCGC 2 cut(s) 797, 1119
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HpaII CCGG 2 cut(s) 6, 750
HphI GGTGA 4 cut(s) 235, 245, 803, 1058
Hpy166II GTNNAC 3 cut(s) 300, 400, 772
Hpy188I TCNGA 9 cut(s) 15, 115, 169, 291, 358, 370, 640, 806, 1107
Hpy188III TCNNGA 3 cut(s) 253, 377, 899
Hpy8I GTNNAC 3 cut(s) 300, 400, 772
Hpy99I CGWCG 2 cut(s) 640, 1036
HpyAV CCTTC 4 cut(s) 92, 222, 288, 905
HpyCH4III ACNGT 3 cut(s) 712, 738, 998
HpyCH4IV ACGT 2 cut(s) 402, 481
HpyCH4V TGCA 9 cut(s) 151, 335, 486, 534, 558, 575, 724, 758, 843
HpyF10VI GCNNNNNNNGC 5 cut(s) 531, 548, 581, 1109, 1118
HpyF3I CTNAG 8 cut(s) 12, 114, 189, 270, 355, 369, 537, 850
HpySE526I ACGT 2 cut(s) 402, 481
Hsp92I GRCGYC 1 cut(s) 1119
Hsp92II CATG 9 cut(s) 76, 203, 332, 514, 562, 748, 902, 974, 1075
HspAI GCGC 2 cut(s) 797, 1119
KasI GGCGCC 1 cut(s) 1118
KpnI GGTACC 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 1003
Kzo9I GATC 3 cut(s) 627, 874, 1003
LmnI GCTCC 4 cut(s) 255, 503, 752, 1108
Lsp1109I GCAGC 6 cut(s) 323, 587, 694, 742, 856, 903
LweI GCATC 2 cut(s) 273, 951
MabI ACCWGGT 1 cut(s) 787
MaeI CTAG 2 cut(s) 767, 939
MaeII ACGT 2 cut(s) 402, 481
MalI GATC 3 cut(s) 629, 876, 1005
MboI GATC 3 cut(s) 627, 874, 1003
MboII GAAGA 3 cut(s) 68, 460, 655
MfeI CAATTG 1 cut(s) 489
MhlI GDGCHC 3 cut(s) 13, 242, 990
MluCI AATT 8 cut(s) 93, 109, 336, 380, 489, 649, 688, 1014
Mly113I GGCGCC 1 cut(s) 1119
MmeI TCCRAC 1 cut(s) 618
MroXI GAANNNNTTC 1 cut(s) 1056
MseI TTAA 3 cut(s) 435, 609, 1017
MslI CAYNNNNRTG 2 cut(s) 22, 999
MspA1I CMGCKG 1 cut(s) 869
MspI CCGG 2 cut(s) 6, 750
MspR9I CCNGG 6 cut(s) 84, 522, 553, 750, 789, 1078
MunI CAATTG 1 cut(s) 489
Mva1269I GAATGC 1 cut(s) 843
MvaI CCWGG 5 cut(s) 84, 522, 553, 789, 1078
MvnI CGCG 1 cut(s) 799
MwoI GCNNNNNNNGC 5 cut(s) 531, 548, 581, 1109, 1118
NarI GGCGCC 1 cut(s) 1119
NciI CCSGG 1 cut(s) 750
NdeII GATC 3 cut(s) 627, 874, 1003
NlaIII CATG 9 cut(s) 76, 203, 332, 514, 562, 748, 902, 974, 1075
NlaIV GGNNCC 4 cut(s) 51, 463, 594, 1120
NspI RCATGY 3 cut(s) 76, 332, 974
OliI CACNNNNGTG 2 cut(s) 22, 999
PaeI GCATGC 1 cut(s) 76
PagI TCATGA 1 cut(s) 898
PciI ACATGT 2 cut(s) 328, 970
PctI GAATGC 1 cut(s) 843
PdmI GAANNNNTTC 1 cut(s) 1056
PflMI CCANNNNNTGG 1 cut(s) 83
PkrI GCNGC 7 cut(s) 313, 577, 684, 757, 871, 893, 923
PluTI GGCGCC 1 cut(s) 1122
PscI ACATGT 2 cut(s) 328, 970
PshAI GACNNNNGTC 1 cut(s) 260
PsiI TTATAA 1 cut(s) 108
Psp1406I AACGTT 1 cut(s) 481
Psp6I CCWGG 5 cut(s) 82, 520, 551, 787, 1076
PspGI CCWGG 5 cut(s) 82, 520, 551, 787, 1076
PspN4I GGNNCC 4 cut(s) 51, 463, 594, 1120
PstI CTGCAG 2 cut(s) 577, 760
PstNI CAGNNNCTG 2 cut(s) 19, 872
PvuII CAGCTG 1 cut(s) 869
RsaI GTAC 2 cut(s) 410, 463
RsaNI GTAC 2 cut(s) 409, 462
RseI CAYNNNNRTG 2 cut(s) 22, 999
SaqAI TTAA 3 cut(s) 435, 609, 1017
SatI GCNGC 7 cut(s) 312, 576, 683, 756, 870, 892, 922
Sau3AI GATC 3 cut(s) 627, 874, 1003
ScrFI CCNGG 6 cut(s) 84, 522, 553, 750, 789, 1078
SduI GDGCHC 3 cut(s) 13, 242, 990
SexAI ACCWGGT 1 cut(s) 787
SfaNI GCATC 2 cut(s) 273, 951
SfcI CTRYAG 3 cut(s) 315, 573, 756
SfoI GGCGCC 1 cut(s) 1120
SmiMI CAYNNNNRTG 2 cut(s) 22, 999
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SphI GCATGC 1 cut(s) 76
Sse9I AATT 8 cut(s) 93, 109, 336, 380, 489, 649, 688, 1014
SsiI CCGC 3 cut(s) 799, 922, 983
SspDI GGCGCC 1 cut(s) 1118
SspI AATATT 1 cut(s) 613
SspMI CTAG 2 cut(s) 767, 939
StyD4I CCNGG 6 cut(s) 82, 520, 551, 748, 787, 1076
TaaI ACNGT 3 cut(s) 712, 738, 998
TaiI ACGT 2 cut(s) 405, 484
TaqI TCGA 1 cut(s) 281
TasI AATT 8 cut(s) 93, 109, 336, 380, 489, 649, 688, 1014
TatI WGTACW 1 cut(s) 408
TauI GCSGC 1 cut(s) 924
Tru1I TTAA 3 cut(s) 435, 609, 1017
Tru9I TTAA 3 cut(s) 435, 609, 1017
TscAI CASTG 6 cut(s) 24, 522, 541, 829, 858, 1001
TseI GCWGC 6 cut(s) 311, 575, 682, 755, 869, 891
TspDTI ATGAA 4 cut(s) 467, 499, 733, 887
TspRI CASTG 6 cut(s) 24, 522, 541, 829, 858, 1001
Van91I CCANNNNNTGG 1 cut(s) 83
XagI CCTNNNNNAGG 1 cut(s) 899
XceI RCATGY 3 cut(s) 76, 332, 974
XcmI CCANNNNNNNNNTGG 1 cut(s) 1045
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 1056
XspI CTAG 2 cut(s) 767, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.