Rorug01G0170000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016386
Physical Location & Seq
Reverse (-)
23123465 .. 23124865
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0170000.1

Sequence Viewer

Length: 1050 bp
ATGAGGAAGAAGCTTGATACTCGTTTCCCCGCGGCTCGAATTAAGAAGATTATGCAAACCGATGAGGATGTTGGGAAGATTGCTTTGGCTGTGCCTCTCCTGGTTTCGAAAGCCTTGGAACTGTTTCTGCAGGATTTATGTGACCGGACTTATGACATAACCCTCAAGAGGGGAGCCAAGACCATGAATTCTCTGCATTTGAAACAGTGTGTCAAGACCTTCAGTGTTTTTGATTTCTTGAAGGATATTGTCAGTAAGGTTCCTGATCTAGGGGGCTCGGATGCTGTTGGGGAGGAATGCCCGGTTGCAAAGAGGAGGAAAGTGGCTGCCGATGATGAAGACACTGAGAGTGATGATGAGACCAAGAGGGGTAAGATGATGAATGATGCTGGTAATACTGTTGGAAGTGGCAGAGGAAGGGGTAGAGGCAGAGGGAGGGGGAGGAAAGCGGTTGCCGATGATGAAGACACTGATACTGATGATGAGTCCAAGACGAGTCTGATGGTGCATGATGCTGGTAACACCATTGGAAGTGGCCGGGGAAGAGGAAGGGGTAGGGGCAGGCCTAGAGGTCGCCCACGTGGCAGTCGGACAGCAGGGAGGGAGATAAGTGCAGCTAATGAGAAATATGAAGATGATTTGGACGTTGATAAGCATGAGGACAAGCTTGATGAGCCCCTTGAGTTGCTGGATGATGCAACAGAGCATAAAGGGTCAAAGGAAAACGCTTCCGGTGGCAATAGTGCAGAAACAGCAGCTCGCAATTTTGATCTGAATGTGGACTTGAATGAAAATGAGGATTCAGCAACTACATCAGCCGCTGTTCCTGTTCCTGTTCCTGTTCCTGTTCCAGCTCCTGCTCCTGCTCCTGTTTCTGTACCTGTTCCTGTTCCTGCTAATCAATCATCACAGTTCACGCCTGATATGAAGCATGTGGAATTCCTAGGTTGGCCTTTGACAGGCATGGAAAAGATGGCCATTGATCCCATGCAACTTGCCAATTTGACTAGGAGGATAGATGAGGAAGACGAAGATTATGATGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

38.01

Weight (kDa)

4.98

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 2e-18 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08721
malus_domestica MD08G1069400.v1.1 MD15G1052700.v1.1
prunus_persica Prupe.1G406600_v2.0.a1
pyrus_communis pycom08g05720
rosa_chinensis RchiOBHm_Chr1g0343961
rosa_laevigata RLG00000028943
rosa_multiflora Rmu_ssc0000434.1_g000040
rosa_roxburghii Rroxscaffold_4G00310210
rosa_rugosa Rorug01G0170000
rosa_samantha Rh1AG186600 Rh1BG153000 Rh1CG172000 Rh1DG185300
rosa_wichuraiana Rw1G015390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AciI CCGC 4 cut(s) 30, 32, 449, 819
AclWI GGATC 1 cut(s) 977
AcoI YGGCCR 2 cut(s) 535, 975
AcsI RAATTY 2 cut(s) 187, 938
AcuI CTGAAG 1 cut(s) 205
AcvI CACGTG 1 cut(s) 581
AfaI GTAC 1 cut(s) 879
AfiI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 959
AgsI TTSAA 3 cut(s) 202, 241, 787
AjnI CCWGG 1 cut(s) 99
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 5 cut(s) 13, 617, 667, 758, 854
AluI AGCT 5 cut(s) 13, 617, 667, 758, 854
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 1 cut(s) 977
AlwNI CAGNNNCTG 2 cut(s) 821, 857
AoxI GGCC 4 cut(s) 535, 563, 950, 975
ApeKI GCWGC 3 cut(s) 326, 614, 755
ApoI RAATTY 2 cut(s) 187, 938
Asp700I GAANNNNTTC 1 cut(s) 123
AspA2I CCTAGG 1 cut(s) 943
AsuC2I CCSGG 2 cut(s) 302, 539
AsuII TTCGAA 1 cut(s) 107
AvrII CCTAGG 1 cut(s) 943
BalI TGGCCA 1 cut(s) 977
BanII GRGCYC 2 cut(s) 278, 678
BbrPI CACGTG 1 cut(s) 581
BbsI GAAGAC 3 cut(s) 345, 471, 1032
BbvI GCAGC 3 cut(s) 313, 626, 767
BccI CCATC 2 cut(s) 496, 967
BciT130I CCWGG 1 cut(s) 101
BcnI CCSGG 2 cut(s) 302, 539
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 4 cut(s) 269, 567, 944, 1008
BfmI CTRYAG 1 cut(s) 128
BglI GCCNNNNNGGC 1 cut(s) 582
BisI GCNGC 5 cut(s) 33, 327, 615, 756, 819
BlnI CCTAGG 1 cut(s) 943
BlsI GCNGC 5 cut(s) 34, 328, 616, 757, 820
Bme1390I CCNGG 3 cut(s) 101, 302, 539
BmiI GGNNCC 2 cut(s) 175, 261
BmrFI CCNGG 3 cut(s) 101, 302, 539
BmsI GCATC 4 cut(s) 271, 376, 502, 685
BpiI GAAGAC 3 cut(s) 345, 471, 1032
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 149, 701
BpuMI CCSGG 2 cut(s) 302, 539
BsaAI YACGTR 1 cut(s) 581
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 4 cut(s) 30, 114, 538, 943
BsaWI WCCGGW 2 cut(s) 144, 731
Bsc4I CCNNNNNNNGG 4 cut(s) 168, 169, 269, 959
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 4 cut(s) 30, 114, 538, 943
BseGI GGATG 3 cut(s) 73, 286, 697
BseLI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 959
BseMII CTCAG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 328
BseXI GCAGC 3 cut(s) 313, 626, 767
BsgI GTGCAG 2 cut(s) 633, 765
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 4 cut(s) 537, 565, 952, 977
BsiSI CCGG 4 cut(s) 145, 302, 538, 732
BslI CCNNNNNNNGG 4 cut(s) 168, 169, 269, 959
BsmAI GTCTC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 4 cut(s) 537, 565, 952, 977
Bso31I GGTCTC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 278, 678
Bsp143I GATC 3 cut(s) 265, 769, 982
BspACI CCGC 4 cut(s) 30, 32, 449, 819
BspANI GGCC 4 cut(s) 537, 565, 952, 977
BspCNI CTCAG 1 cut(s) 337
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 2 cut(s) 175, 261
BspMAI CTGCAG 1 cut(s) 132
BspPI GGATC 1 cut(s) 977
BspT104I TTCGAA 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 353
BssECI CCNNGG 4 cut(s) 30, 114, 538, 943
BssMI GATC 3 cut(s) 265, 769, 982
BssT1I CCWWGG 2 cut(s) 114, 943
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 4 cut(s) 123, 207, 400, 912
Bst6I CTCTTC 1 cut(s) 538
BstBAI YACGTR 1 cut(s) 581
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 563, 760
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 2 cut(s) 267, 957
BstF5I GGATG 3 cut(s) 73, 286, 697
BstFNI CGCG 1 cut(s) 32
BstKTI GATC 3 cut(s) 268, 772, 985
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 3 cut(s) 265, 769, 982
BstMWI GCNNNNNNNGC 3 cut(s) 582, 673, 752
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 935
BstSCI CCNGG 3 cut(s) 99, 300, 537
BstSFI CTRYAG 1 cut(s) 128
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 3 cut(s) 313, 626, 767
BstV2I GAAGAC 3 cut(s) 345, 471, 1032
BsuRI GGCC 4 cut(s) 537, 565, 952, 977
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 3 cut(s) 73, 286, 697
BtsIMutI CAGTG 4 cut(s) 212, 229, 342, 468
Cac8I GCNNGC 2 cut(s) 563, 760
CaiI CAGNNNCTG 2 cut(s) 821, 857
Cfr42I CCGCGG 1 cut(s) 33
Csp6I GTAC 1 cut(s) 878
CviAII CATG 6 cut(s) 184, 509, 656, 932, 964, 988
CviQI GTAC 1 cut(s) 878
DdeI CTNAG 1 cut(s) 345
DpnI GATC 3 cut(s) 267, 771, 984
DpnII GATC 3 cut(s) 265, 769, 982
EaeI YGGCCR 2 cut(s) 535, 975
Eam1104I CTCTTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 538
Eco130I CCWWGG 2 cut(s) 114, 943
Eco147I AGGCCT 1 cut(s) 565
Eco24I GRGCYC 2 cut(s) 278, 678
Eco31I GGTCTC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 581
EcoNI CCTNNNNNAGG 2 cut(s) 267, 957
EcoRI GAATTC 2 cut(s) 187, 938
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 2 cut(s) 114, 943
EcoT38I GRGCYC 2 cut(s) 278, 678
ErhI CCWWGG 2 cut(s) 114, 943
FaeI CATG 6 cut(s) 187, 512, 659, 935, 967, 991
FatI CATG 6 cut(s) 183, 508, 655, 931, 963, 987
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 5 cut(s) 33, 327, 615, 756, 819
FokI GGATG 3 cut(s) 80, 293, 704
FriOI GRGCYC 2 cut(s) 278, 678
Fsp4HI GCNGC 5 cut(s) 33, 327, 615, 756, 819
FspBI CTAG 4 cut(s) 269, 567, 944, 1008
GluI GCNGC 5 cut(s) 33, 327, 615, 756, 819
HaeIII GGCC 4 cut(s) 537, 565, 952, 977
HapII CCGG 4 cut(s) 145, 302, 538, 732
Hin1II CATG 6 cut(s) 187, 512, 659, 935, 967, 991
HindIII AAGCTT 2 cut(s) 11, 665
HinfI GANTC 3 cut(s) 485, 496, 800
HpaII CCGG 4 cut(s) 145, 302, 538, 732
Hpy166II GTNNAC 2 cut(s) 781, 915
Hpy188I TCNGA 4 cut(s) 280, 501, 591, 774
Hpy188III TCNNGA 4 cut(s) 166, 214, 238, 263
Hpy8I GTNNAC 2 cut(s) 781, 915
HpyAV CCTTC 4 cut(s) 229, 235, 411, 543
HpyCH4III ACNGT 4 cut(s) 123, 207, 400, 912
HpyCH4IV ACGT 2 cut(s) 580, 645
HpyCH4V TGCA 9 cut(s) 55, 130, 196, 308, 508, 614, 698, 746, 991
HpyF10VI GCNNNNNNNGC 3 cut(s) 582, 673, 752
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 2 cut(s) 580, 645
Hsp92II CATG 6 cut(s) 187, 512, 659, 935, 967, 991
KspI CCGCGG 1 cut(s) 33
Kzo9I GATC 3 cut(s) 265, 769, 982
LmnI GCTCC 4 cut(s) 173, 859, 865, 871
Lsp1109I GCAGC 3 cut(s) 313, 626, 767
LweI GCATC 4 cut(s) 271, 376, 502, 685
MaeI CTAG 4 cut(s) 269, 567, 944, 1008
MaeII ACGT 2 cut(s) 580, 645
MaeIII GTNAC 2 cut(s) 140, 518
MalI GATC 3 cut(s) 267, 771, 984
MboI GATC 3 cut(s) 265, 769, 982
MboII GAAGA 9 cut(s) 19, 58, 88, 350, 476, 555, 644, 1037, 1043
MhlI GDGCHC 2 cut(s) 278, 678
MlsI TGGCCA 1 cut(s) 977
MluCI AATT 5 cut(s) 39, 187, 763, 938, 1000
MluNI TGGCCA 1 cut(s) 977
MlyI GAGTC 2 cut(s) 494, 505
MmeI TCCRAC 2 cut(s) 382, 569
Mox20I TGGCCA 1 cut(s) 977
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 977
MseI TTAA 2 cut(s) 42, 1048
Msp20I TGGCCA 1 cut(s) 977
MspA1I CMGCKG 2 cut(s) 32, 821
MspI CCGG 4 cut(s) 145, 302, 538, 732
MspR9I CCNGG 3 cut(s) 101, 302, 539
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 582, 673, 752
NciI CCSGG 2 cut(s) 302, 539
NdeII GATC 3 cut(s) 265, 769, 982
NlaIII CATG 6 cut(s) 187, 512, 659, 935, 967, 991
NlaIV GGNNCC 2 cut(s) 175, 261
NmuCI GTSAC 1 cut(s) 140
NspI RCATGY 1 cut(s) 935
NspV TTCGAA 1 cut(s) 107
PceI AGGCCT 1 cut(s) 565
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 800
PkrI GCNGC 5 cut(s) 34, 328, 616, 757, 820
PleI GAGTC 2 cut(s) 493, 504
PmaCI CACGTG 1 cut(s) 581
PmlI CACGTG 1 cut(s) 581
PpsI GAGTC 2 cut(s) 493, 504
Ppu21I YACGTR 1 cut(s) 581
Psp6I CCWGG 1 cut(s) 99
PspCI CACGTG 1 cut(s) 581
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 175, 261
PstI CTGCAG 1 cut(s) 132
PstNI CAGNNNCTG 2 cut(s) 821, 857
RsaI GTAC 1 cut(s) 879
RsaNI GTAC 1 cut(s) 878
SacII CCGCGG 1 cut(s) 33
SaqAI TTAA 2 cut(s) 42, 1048
SatI GCNGC 5 cut(s) 33, 327, 615, 756, 819
Sau3AI GATC 3 cut(s) 265, 769, 982
SchI GAGTC 2 cut(s) 494, 505
ScrFI CCNGG 3 cut(s) 101, 302, 539
SduI GDGCHC 2 cut(s) 278, 678
SfaNI GCATC 4 cut(s) 271, 376, 502, 685
SfcI CTRYAG 1 cut(s) 128
Sfr303I CCGCGG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 107
SgrBI CCGCGG 1 cut(s) 33
SmlI CTYRAG 2 cut(s) 164, 680
SmoI CTYRAG 2 cut(s) 164, 680
Sse9I AATT 5 cut(s) 39, 187, 763, 938, 1000
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 4 cut(s) 30, 32, 449, 819
SspMI CTAG 4 cut(s) 269, 567, 944, 1008
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 3 cut(s) 99, 300, 537
StyI CCWWGG 2 cut(s) 114, 943
TaaI ACNGT 4 cut(s) 123, 207, 400, 912
TaiI ACGT 2 cut(s) 583, 648
TaqI TCGA 2 cut(s) 37, 107
TasI AATT 5 cut(s) 39, 187, 763, 938, 1000
TauI GCSGC 2 cut(s) 35, 821
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 2 cut(s) 42, 1048
Tru9I TTAA 2 cut(s) 42, 1048
TscAI CASTG 4 cut(s) 212, 229, 349, 475
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 3 cut(s) 326, 614, 755
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 7 cut(s) 200, 351, 395, 477, 645, 804, 941
TspRI CASTG 4 cut(s) 212, 229, 349, 475
XagI CCTNNNNNAGG 2 cut(s) 267, 957
XapI RAATTY 2 cut(s) 187, 938
XceI RCATGY 1 cut(s) 935
XmaJI CCTAGG 1 cut(s) 943
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 4 cut(s) 269, 567, 944, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.