RchiOBHm_Chr1g0343961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016386
Physical Location & Seq
Forward (+)
36307194 .. 36308647
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57045

Sequence Viewer

Length: 1137 bp
ATGTGCACTGTTCAGACGCTTGTGTGTGTGAAACAAGTGAAGCAAGAGATTGCAGAAGAGTGGAATGAGACTATGCCATTGCCTGGAGACATCATCGAAGGCTTTTACAATGGCGAGAGTGATGAGTTTTTTGTGCCCACCAAAGCTAAGTCTGAGCTTAGTTCACAGCTTGCTAAGATAAGCAGCCAACATATAGAGGTCATATGGGTGAAGATCAGAAGGGGTGATACCACTCTCAAGCTCCGGACGCGTGTTGCGGTGGAGAGGCTTTCCATGCTTCAAAGAAAGTATAGCATCAAAGCAGCCACAGATGACAGACATGTTGCGGTCATAGGGGACTTGACCTCGGATCAATGCACCGAGCTGCAAGAAATGAGCAGGAGTTTGGTAAATGTGGAAAACAGAGGATATAACAAAAGGGGAGTAAAATATGACTGGAAGATGAAAGTGAGAAAGTATTTGCCTGACCAACGTTGCACGGTTGTTAGCTCTATTCTGTTCATGCCAATGCAGGGTGAGTACTGCACTGAGGCCACAACAGCCAGGTGCATGGCTTGGTTTTCTGCAGCAGTTTCTTCAGGGGCTCCTCTTGTTTTTGTTAATATTCAAACCGAACAGACTGTGACCTCGAAAATTAATTTAACAGGAAAGGAAGTGAGTTGGAGTAAACAGCAACAACACCATGCAACGACGGTCCAAATAGTCCAGGGCATAAGACTCTGGTTTATGCCGGGCGTTGCAGAAGTGTCATTCGATTTGGTACCCCAAACCGGTGAAGTCCGATTTGGATTGGACATCAAACGGACAGAAGAGGGGTTGATATGCATCTACTCTGTTGCAAAGGAAACACCAGCAGACCGAGCAGGGCTTAGGAGTCTCCATGAGGAAGCATATGCAAGTGGTTACCTCCTTGTCATGTCCAGATTAGAGGGCAAGAGCCTAATGCCTTCTCATGCTGACATTTCAGGGCTCATTCACTGTTGCGATCACACCGAAATTAAGAACACTCTAGTCTCGGCGATAGACCAGATGGACAGAATTCAAATTCATGTTATGGCGTGGTCTAACCAAGCACGTCCTACTACTCCCAATACCACAGCAGTTGGTGCCACAATGCTACGCCCAAGACCATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

42.46

Weight (kDa)

8.02

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08721
malus_domestica MD08G1069400.v1.1 MD15G1052700.v1.1
prunus_persica Prupe.1G406600_v2.0.a1
pyrus_communis pycom08g05720
rosa_chinensis RchiOBHm_Chr1g0343961
rosa_laevigata RLG00000028943
rosa_multiflora Rmu_ssc0000434.1_g000040
rosa_roxburghii Rroxscaffold_4G00310210
rosa_rugosa Rorug01G0170000
rosa_samantha Rh1AG186600 Rh1BG153000 Rh1CG172000 Rh1DG185300
rosa_wichuraiana Rw1G015390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 760
AccB1I GGYRCC 2 cut(s) 760, 1106
AccB7I CCANNNNNTGG 1 cut(s) 83
AccII CGCG 1 cut(s) 250
AccIII TCCGGA 1 cut(s) 243
AciI CCGC 2 cut(s) 257, 326
AclI AACGTT 1 cut(s) 472
AclWI GGATC 1 cut(s) 357
AcsI RAATTY 2 cut(s) 1038, 1044
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 2 cut(s) 521, 762
AfiI CCNNNNNNNGG 3 cut(s) 83, 512, 770
AflIII ACRYGT 2 cut(s) 248, 319
AgeI ACCGGT 1 cut(s) 770
AgsI TTSAA 3 cut(s) 281, 608, 1043
AjiI CACGTC 1 cut(s) 1076
AjnI CCWGG 3 cut(s) 82, 542, 705
AjuI GAANNNNNNNTTGG 2 cut(s) 768, 800
AluBI AGCT 6 cut(s) 146, 157, 169, 241, 364, 489
AluI AGCT 6 cut(s) 146, 157, 169, 241, 364, 489
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 4 cut(s) 62, 81, 881, 1018
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 1 cut(s) 357
Aor13HI TCCGGA 1 cut(s) 243
AoxI GGCC 1 cut(s) 531
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 4 cut(s) 183, 302, 364, 566
ApoI RAATTY 2 cut(s) 1038, 1044
AseI ATTAAT 1 cut(s) 636
AsiGI ACCGGT 1 cut(s) 770
Asp718I GGTACC 1 cut(s) 760
AspS9I GGNCC 1 cut(s) 694
AsuC2I CCSGG 1 cut(s) 732
AsuHPI GGTGA 4 cut(s) 220, 236, 527, 785
AvaII GGWCC 1 cut(s) 694
BaeGI GKGCMC 2 cut(s) 8, 138
BanI GGYRCC 2 cut(s) 760, 1106
BanII GRGCYC 2 cut(s) 586, 972
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 4 cut(s) 195, 314, 351, 578
BccI CCATC 1 cut(s) 1024
BciT130I CCWGG 3 cut(s) 84, 544, 707
BcnI CCSGG 1 cut(s) 732
BcoDI GTCTC 4 cut(s) 62, 81, 881, 1018
BfaI CTAG 1 cut(s) 1010
BfmI CTRYAG 1 cut(s) 564
BisI GCNGC 4 cut(s) 184, 303, 365, 567
BlsI GCNGC 4 cut(s) 185, 304, 366, 568
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 4 cut(s) 84, 544, 707, 732
Bme18I GGWCC 1 cut(s) 694
BmgBI CACGTC 1 cut(s) 1076
BmgT120I GGNCC 1 cut(s) 694
BmiI GGNNCC 3 cut(s) 585, 762, 1108
BmrFI CCNGG 4 cut(s) 84, 544, 707, 732
BmsI GCATC 2 cut(s) 303, 834
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 869
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 732
BsaBI GATNNNNATC 1 cut(s) 824
BsaJI CCNNGG 2 cut(s) 345, 706
BsaWI WCCGGW 2 cut(s) 243, 770
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 512, 770
Bse118I RCCGGY 1 cut(s) 770
Bse1I ACTGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 824
BseAI TCCGGA 1 cut(s) 243
BseBI CCWGG 3 cut(s) 84, 544, 707
BseDI CCNNGG 2 cut(s) 345, 706
BseJI GATNNNNATC 1 cut(s) 824
BseLI CCNNNNNNNGG 3 cut(s) 83, 512, 770
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 144, 519
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 1 cut(s) 576
BseSI GKGCMC 2 cut(s) 8, 138
BseXI GCAGC 4 cut(s) 195, 314, 351, 578
BsgI GTGCAG 1 cut(s) 508
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 533
BshNI GGYRCC 2 cut(s) 760, 1106
BshTI ACCGGT 1 cut(s) 770
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 3 cut(s) 244, 731, 771
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 3 cut(s) 83, 512, 770
BsmAI GTCTC 4 cut(s) 62, 81, 881, 1018
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 1 cut(s) 533
Bsp1286I GDGCHC 4 cut(s) 8, 138, 586, 972
Bsp13I TCCGGA 1 cut(s) 243
Bsp143I GATC 3 cut(s) 213, 349, 985
BspACI CCGC 2 cut(s) 257, 326
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 2 cut(s) 145, 520
BspEI TCCGGA 1 cut(s) 243
BspFNI CGCG 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 585, 762, 1108
BspMAI CTGCAG 1 cut(s) 568
BspPI GGATC 1 cut(s) 357
BspT107I GGYRCC 2 cut(s) 760, 1106
BsrDI GCAATG 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 770
BsrI ACTGG 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 770
BssECI CCNNGG 2 cut(s) 345, 706
BssMI GATC 3 cut(s) 213, 349, 985
Bst2UI CCWGG 3 cut(s) 84, 544, 707
Bst4CI ACNGT 5 cut(s) 10, 481, 622, 694, 980
Bst6I CTCTTC 2 cut(s) 51, 804
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstC8I GCNNGC 1 cut(s) 171
BstDEI CTNAG 6 cut(s) 147, 153, 158, 174, 528, 869
BstEII GGTNACC 1 cut(s) 902
BstFNI CGCG 1 cut(s) 250
BstKTI GATC 3 cut(s) 216, 352, 988
BstMAI GTCTC 4 cut(s) 62, 81, 881, 1018
BstMBI GATC 3 cut(s) 213, 349, 985
BstMWI GCNNNNNNNGC 5 cut(s) 247, 274, 539, 860, 1106
BstNI CCWGG 3 cut(s) 84, 544, 707
BstNSI RCATGY 1 cut(s) 323
BstPI GGTNACC 1 cut(s) 902
BstSCI CCNGG 4 cut(s) 82, 542, 705, 730
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 2 cut(s) 8, 138
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 4 cut(s) 195, 314, 351, 578
BstXI CCANNNNNNTGG 1 cut(s) 550
BsuRI GGCC 1 cut(s) 533
BtrI CACGTC 1 cut(s) 1076
BtsIMutI CAGTG 3 cut(s) 6, 525, 976
Cac8I GCNNGC 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 770
Cfr13I GGNCC 1 cut(s) 694
CseI GACGC 2 cut(s) 25, 256
Csp6I GTAC 2 cut(s) 520, 761
CspAI ACCGGT 1 cut(s) 770
CspCI CAANNNNNGTGG 2 cut(s) 1084, 1119
CviAII CATG 9 cut(s) 274, 320, 502, 550, 683, 881, 916, 953, 1049
CviQI GTAC 2 cut(s) 520, 761
DdeI CTNAG 6 cut(s) 147, 153, 158, 174, 528, 869
DpnI GATC 3 cut(s) 215, 351, 987
DpnII GATC 3 cut(s) 213, 349, 985
Eam1104I CTCTTC 2 cut(s) 51, 804
EarI CTCTTC 2 cut(s) 51, 804
Eco24I GRGCYC 2 cut(s) 586, 972
Eco47I GGWCC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 561
Eco91I GGTNACC 1 cut(s) 902
EcoO65I GGTNACC 1 cut(s) 902
EcoRI GAATTC 1 cut(s) 1038
EcoRII CCWGG 3 cut(s) 82, 542, 705
EcoT22I ATGCAT 1 cut(s) 827
EcoT38I GRGCYC 2 cut(s) 586, 972
FaeI CATG 9 cut(s) 277, 323, 505, 553, 686, 884, 919, 956, 1052
FaqI GGGAC 1 cut(s) 350
FatI CATG 9 cut(s) 273, 319, 501, 549, 682, 880, 915, 952, 1048
FauNDI CATATG 2 cut(s) 203, 892
Fnu4HI GCNGC 4 cut(s) 184, 303, 365, 567
FriOI GRGCYC 2 cut(s) 586, 972
Fsp4HI GCNGC 4 cut(s) 184, 303, 365, 567
FspBI CTAG 1 cut(s) 1010
GluI GCNGC 4 cut(s) 184, 303, 365, 567
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 533
HapII CCGG 3 cut(s) 244, 731, 771
HgaI GACGC 2 cut(s) 25, 256
Hin1II CATG 9 cut(s) 277, 323, 505, 553, 686, 884, 919, 956, 1052
HinfI GANTC 2 cut(s) 717, 874
HpaII CCGG 3 cut(s) 244, 731, 771
HphI GGTGA 4 cut(s) 220, 236, 527, 785
Hpy166II GTNNAC 3 cut(s) 6, 164, 668
Hpy188I TCNGA 5 cut(s) 15, 154, 218, 349, 782
Hpy188III TCNNGA 3 cut(s) 244, 921, 1134
Hpy8I GTNNAC 3 cut(s) 6, 164, 668
Hpy99I CGWCG 1 cut(s) 694
HpyAV CCTTC 3 cut(s) 92, 213, 957
HpyCH4III ACNGT 5 cut(s) 10, 481, 622, 694, 980
HpyCH4IV ACGT 2 cut(s) 472, 1075
HpyF10VI GCNNNNNNNGC 5 cut(s) 247, 274, 539, 860, 1106
HpyF3I CTNAG 6 cut(s) 147, 153, 158, 174, 528, 869
HpySE526I ACGT 2 cut(s) 472, 1075
Hsp92II CATG 9 cut(s) 277, 323, 505, 553, 686, 884, 919, 956, 1052
Kpn2I TCCGGA 1 cut(s) 243
KpnI GGTACC 1 cut(s) 764
Kzo9I GATC 3 cut(s) 213, 349, 985
LmnI GCTCC 2 cut(s) 246, 589
Lsp1109I GCAGC 4 cut(s) 195, 314, 351, 578
LweI GCATC 2 cut(s) 303, 834
MaeI CTAG 1 cut(s) 1010
MaeII ACGT 2 cut(s) 472, 1075
MaeIII GTNAC 2 cut(s) 622, 902
MalI GATC 3 cut(s) 215, 351, 987
MboI GATC 3 cut(s) 213, 349, 985
MboII GAAGA 5 cut(s) 68, 223, 451, 567, 821
MhlI GDGCHC 4 cut(s) 8, 138, 586, 972
MluCI AATT 5 cut(s) 633, 637, 996, 1038, 1044
MluI ACGCGT 1 cut(s) 248
MlyI GAGTC 2 cut(s) 711, 883
MmeI TCCRAC 1 cut(s) 641
Mph1103I ATGCAT 1 cut(s) 827
MroI TCCGGA 1 cut(s) 243
MseI TTAA 4 cut(s) 600, 636, 641, 999
MslI CAYNNNNRTG 2 cut(s) 206, 506
MspI CCGG 3 cut(s) 244, 731, 771
MspR9I CCNGG 4 cut(s) 84, 544, 707, 732
MvaI CCWGG 3 cut(s) 84, 544, 707
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 5 cut(s) 247, 274, 539, 860, 1106
NciI CCSGG 1 cut(s) 732
NdeI CATATG 2 cut(s) 203, 892
NdeII GATC 3 cut(s) 213, 349, 985
NlaIII CATG 9 cut(s) 277, 323, 505, 553, 686, 884, 919, 956, 1052
NlaIV GGNNCC 3 cut(s) 585, 762, 1108
NmeAIII GCCGAG 1 cut(s) 995
NmuCI GTSAC 1 cut(s) 622
NsiI ATGCAT 1 cut(s) 827
NspI RCATGY 1 cut(s) 323
PciI ACATGT 1 cut(s) 319
PflMI CCANNNNNTGG 1 cut(s) 83
PinAI ACCGGT 1 cut(s) 770
PkrI GCNGC 4 cut(s) 185, 304, 366, 568
PleI GAGTC 2 cut(s) 711, 882
PpsI GAGTC 2 cut(s) 711, 882
PscI ACATGT 1 cut(s) 319
PshBI ATTAAT 1 cut(s) 636
Psp1406I AACGTT 1 cut(s) 472
Psp6I CCWGG 3 cut(s) 82, 542, 705
PspEI GGTNACC 1 cut(s) 902
PspGI CCWGG 3 cut(s) 82, 542, 705
PspN4I GGNNCC 3 cut(s) 585, 762, 1108
PspPI GGNCC 1 cut(s) 694
PstI CTGCAG 1 cut(s) 568
RsaI GTAC 2 cut(s) 521, 762
RsaNI GTAC 2 cut(s) 520, 761
RseI CAYNNNNRTG 2 cut(s) 206, 506
SaqAI TTAA 4 cut(s) 600, 636, 641, 999
SatI GCNGC 4 cut(s) 184, 303, 365, 567
Sau3AI GATC 3 cut(s) 213, 349, 985
Sau96I GGNCC 1 cut(s) 694
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 2 cut(s) 711, 883
ScrFI CCNGG 4 cut(s) 84, 544, 707, 732
SduI GDGCHC 4 cut(s) 8, 138, 586, 972
SfaNI GCATC 2 cut(s) 303, 834
SfcI CTRYAG 1 cut(s) 564
SinI GGWCC 1 cut(s) 694
SmiMI CAYNNNNRTG 2 cut(s) 206, 506
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 5 cut(s) 633, 637, 996, 1038, 1044
SsiI CCGC 2 cut(s) 257, 326
SspI AATATT 1 cut(s) 604
SspMI CTAG 1 cut(s) 1010
StyD4I CCNGG 4 cut(s) 82, 542, 705, 730
TaaI ACNGT 5 cut(s) 10, 481, 622, 694, 980
TaiI ACGT 2 cut(s) 475, 1078
TaqI TCGA 3 cut(s) 96, 629, 753
TaqII GACCGA 1 cut(s) 873
TasI AATT 5 cut(s) 633, 637, 996, 1038, 1044
TatI WGTACW 1 cut(s) 519
Tru1I TTAA 4 cut(s) 600, 636, 641, 999
Tru9I TTAA 4 cut(s) 600, 636, 641, 999
TscAI CASTG 3 cut(s) 13, 532, 983
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 4 cut(s) 183, 302, 364, 566
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 3 cut(s) 458, 490, 1037
TspGWI ACGGA 1 cut(s) 817
TspRI CASTG 3 cut(s) 13, 532, 983
Van91I CCANNNNNTGG 1 cut(s) 83
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 1 cut(s) 694
VspI ATTAAT 1 cut(s) 636
XapI RAATTY 2 cut(s) 1038, 1044
XceI RCATGY 1 cut(s) 323
XspI CTAG 1 cut(s) 1010
ZrmI AGTACT 1 cut(s) 521
Zsp2I ATGCAT 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.