Rroxscaffold_4G00310210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016386
Physical Location & Seq
Reverse (-)
32115760 .. 32117219
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310210.1

Sequence Viewer

Length: 1140 bp
ATGTGCACTGTTCATACGCTTGTGTGTGTGAAACAAGTGAAGCAAGAGATTGCAGAAGAGTGGAATGAGACTATGCCATTGCCTGGAGACATCATTGAAGGCTTTTACAATGGCGAGAGTGATGAGTTTTTTGTGCCCACCAAAGCTAAGTCTGAGCTTAGTTCACAGCTTGCTAAGATAAGCAGCCAACATATAGAGGTCATATGGGTGAAGGTCAGAAGGGGTGATACCACTCTCAAGCTCCGGGCGCGTGTTGCGGTGGAGAGGCTTTCCATGCTTCAAAGAAAGTATAGCATCAAAGCAGCCACAGATGACAGACATATCGCAGTCATAGGGGACTTGACCTCCGAACAATGCACCGAGCTGCAAGAAATGAGCCGGAGTTTGGTAAATGTAGAAAACAGAGGATATAACAAAAGGGGAGTAAAATATGACTGGAAGATGAAAGTGAGCAAGTATTTGCCTGACCAACGTTGCACGGTTGTTAGCTCTATTCTGTTCATGACAATGCAGGGTGAGTACTGCACTGAGGCCACAACAGCAAGGTGCATGGCGTGGTTTTCTGCAGCAGTTTCTTCAGGGGCTCCTCTTGTTTTTGTTAATATTCAAACCGAACAGACTGTGTCCTCGGAGAAAAGTAATTTAACAGGAAAGGAAATGAGTTGGAGTAAACAGCAACAAAACCATGCAACGACGGTCCAAATAGTCCAGGGTATAAGACTCTGGTTCATGCCGGGCGTTGCAGAAGTGTCATTCGATTTGGTACCCCAAACCGGTGAAGTCCGATTTGGATTGGACATCAAACGGACAGAGGAGGGGTTGATATGCATCTACTCCGTTGCAAAGGGAACACCAGCAGACCGAGCAGGGCTTAGGAGTCTTCATGAGGAAGCATATGCAAGTGGTTACCTCCTTGTCATGTCCAGATTAGAGGGCAAGAGCCTAATGCCTTCGCATGCTGACATTTCAGGGCTCATTCACTGCTGCGAACACACTGAAATTAAGGACACTCTATTCTTGGCGATAGACCAGATGGATAGAATTCAAATTCATGTTATGGCGTGGTCTAACCAAGGACGTCCTACTACTCCCAATACCACAGCAGTTGGTGCCACAATGCTACGCCCAAGACCATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

42.49

Weight (kDa)

7.1

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08721
malus_domestica MD08G1069400.v1.1 MD15G1052700.v1.1
prunus_persica Prupe.1G406600_v2.0.a1
pyrus_communis pycom08g05720
rosa_chinensis RchiOBHm_Chr1g0343961
rosa_laevigata RLG00000028943
rosa_multiflora Rmu_ssc0000434.1_g000040
rosa_roxburghii Rroxscaffold_4G00310210
rosa_rugosa Rorug01G0170000
rosa_samantha Rh1AG186600 Rh1BG153000 Rh1CG172000 Rh1DG185300
rosa_wichuraiana Rw1G015390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1081
Acc65I GGTACC 1 cut(s) 763
AccB1I GGYRCC 2 cut(s) 763, 1109
AccB7I CCANNNNNTGG 1 cut(s) 83
AccII CGCG 1 cut(s) 250
AciI CCGC 1 cut(s) 257
AclI AACGTT 1 cut(s) 472
AcsI RAATTY 2 cut(s) 1041, 1047
AcuI CTGAAG 1 cut(s) 561
AcyI GRCGYC 1 cut(s) 1078
AfaI GTAC 2 cut(s) 521, 765
AfiI CCNNNNNNNGG 3 cut(s) 83, 385, 773
AgeI ACCGGT 1 cut(s) 773
AgsI TTSAA 4 cut(s) 98, 281, 608, 1046
AjnI CCWGG 2 cut(s) 82, 708
AjuI GAANNNNNNNTTGG 2 cut(s) 771, 803
AluBI AGCT 6 cut(s) 146, 157, 169, 241, 364, 489
AluI AGCT 6 cut(s) 146, 157, 169, 241, 364, 489
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 62, 81
Alw44I GTGCAC 1 cut(s) 4
AoxI GGCC 1 cut(s) 531
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 5 cut(s) 183, 302, 364, 566, 984
ApoI RAATTY 2 cut(s) 1041, 1047
AsiGI ACCGGT 1 cut(s) 773
Asp718I GGTACC 1 cut(s) 763
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 697
AsuC2I CCSGG 2 cut(s) 245, 735
AsuHPI GGTGA 4 cut(s) 220, 236, 527, 788
AvaII GGWCC 1 cut(s) 697
BaeGI GKGCMC 2 cut(s) 8, 138
BanI GGYRCC 2 cut(s) 763, 1109
BanII GRGCYC 2 cut(s) 586, 975
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
BbsI GAAGAC 1 cut(s) 872
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 5 cut(s) 195, 314, 351, 578, 971
BccI CCATC 1 cut(s) 1027
BciT130I CCWGG 2 cut(s) 84, 710
BcnI CCSGG 2 cut(s) 245, 735
BcoDI GTCTC 2 cut(s) 62, 81
BfmI CTRYAG 1 cut(s) 564
BisI GCNGC 5 cut(s) 184, 303, 365, 567, 985
BlsI GCNGC 5 cut(s) 185, 304, 366, 568, 986
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 4 cut(s) 84, 245, 710, 735
Bme18I GGWCC 1 cut(s) 697
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 3 cut(s) 585, 765, 1111
BmrFI CCNGG 4 cut(s) 84, 245, 710, 735
BmsI GCATC 2 cut(s) 303, 837
BpiI GAAGAC 1 cut(s) 872
BpmI CTGGAG 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 872
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 2 cut(s) 245, 735
BsaBI GATNNNNATC 1 cut(s) 827
BsaHI GRCGYC 1 cut(s) 1078
BsaJI CCNNGG 3 cut(s) 627, 709, 1072
BsaWI WCCGGW 1 cut(s) 773
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 385, 773
Bse118I RCCGGY 1 cut(s) 773
Bse1I ACTGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 827
BseBI CCWGG 2 cut(s) 84, 710
BseDI CCNNGG 3 cut(s) 627, 709, 1072
BseJI GATNNNNATC 1 cut(s) 827
BseLI CCNNNNNNNGG 3 cut(s) 83, 385, 773
BseMI GCAATG 1 cut(s) 77
BseMII CTCAG 2 cut(s) 144, 519
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 2 cut(s) 576, 827
BseSI GKGCMC 2 cut(s) 8, 138
BseXI GCAGC 5 cut(s) 195, 314, 351, 578, 971
BsgI GTGCAG 1 cut(s) 508
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 533
BshNI GGYRCC 2 cut(s) 763, 1109
BshTI ACCGGT 1 cut(s) 773
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 4 cut(s) 244, 379, 734, 774
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 3 cut(s) 83, 385, 773
BsmAI GTCTC 2 cut(s) 62, 81
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 1 cut(s) 533
Bsp1286I GDGCHC 4 cut(s) 8, 138, 586, 975
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 2 cut(s) 145, 520
BspFNI CGCG 1 cut(s) 250
BspHI TCATGA 2 cut(s) 501, 883
BspLI GGNNCC 3 cut(s) 585, 765, 1111
BspMAI CTGCAG 1 cut(s) 568
BspT107I GGYRCC 2 cut(s) 763, 1109
BsrDI GCAATG 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 773
BsrI ACTGG 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 773
BssECI CCNNGG 3 cut(s) 627, 709, 1072
BssNI GRCGYC 1 cut(s) 1078
BssT1I CCWWGG 1 cut(s) 1072
Bst2UI CCWGG 2 cut(s) 84, 710
Bst4CI ACNGT 4 cut(s) 10, 481, 622, 697
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 1078
BstAPI GCANNNNNTGC 1 cut(s) 1109
BstC8I GCNNGC 2 cut(s) 171, 957
BstDEI CTNAG 6 cut(s) 147, 153, 158, 174, 528, 872
BstEII GGTNACC 1 cut(s) 905
BstFNI CGCG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 250
BstMAI GTCTC 2 cut(s) 62, 81
BstMWI GCNNNNNNNGC 6 cut(s) 247, 254, 274, 539, 863, 1109
BstNI CCWGG 2 cut(s) 84, 710
BstNSI RCATGY 1 cut(s) 959
BstPI GGTNACC 1 cut(s) 905
BstSCI CCNGG 4 cut(s) 82, 243, 708, 733
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 2 cut(s) 8, 138
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 5 cut(s) 195, 314, 351, 578, 971
BstV2I GAAGAC 1 cut(s) 872
BsuRI GGCC 1 cut(s) 533
BtsI GCAGTG 1 cut(s) 979
BtsIMutI CAGTG 4 cut(s) 6, 525, 979, 993
Cac8I GCNNGC 2 cut(s) 171, 957
CciI TCATGA 2 cut(s) 501, 883
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 773
Cfr13I GGNCC 1 cut(s) 697
Csp6I GTAC 2 cut(s) 520, 764
CspAI ACCGGT 1 cut(s) 773
CspCI CAANNNNNGTGG 2 cut(s) 1087, 1122
CviAII CATG 9 cut(s) 274, 502, 550, 686, 730, 884, 919, 956, 1052
CviQI GTAC 2 cut(s) 520, 764
DdeI CTNAG 6 cut(s) 147, 153, 158, 174, 528, 872
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 1072
Eco24I GRGCYC 2 cut(s) 586, 975
Eco47I GGWCC 1 cut(s) 697
Eco57I CTGAAG 1 cut(s) 561
Eco91I GGTNACC 1 cut(s) 905
EcoO65I GGTNACC 1 cut(s) 905
EcoRI GAATTC 1 cut(s) 1041
EcoRII CCWGG 2 cut(s) 82, 708
EcoT14I CCWWGG 1 cut(s) 1072
EcoT22I ATGCAT 1 cut(s) 830
EcoT38I GRGCYC 2 cut(s) 586, 975
ErhI CCWWGG 1 cut(s) 1072
FaeI CATG 9 cut(s) 277, 505, 553, 689, 733, 887, 922, 959, 1055
FaqI GGGAC 1 cut(s) 350
FatI CATG 9 cut(s) 273, 501, 549, 685, 729, 883, 918, 955, 1051
FauNDI CATATG 2 cut(s) 203, 895
Fnu4HI GCNGC 5 cut(s) 184, 303, 365, 567, 985
FriOI GRGCYC 2 cut(s) 586, 975
Fsp4HI GCNGC 5 cut(s) 184, 303, 365, 567, 985
GlaI GCGC 1 cut(s) 249
GluI GCNGC 5 cut(s) 184, 303, 365, 567, 985
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 533
HapII CCGG 4 cut(s) 244, 379, 734, 774
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 1078
Hin1II CATG 9 cut(s) 277, 505, 553, 689, 733, 887, 922, 959, 1055
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 2 cut(s) 720, 877
HpaII CCGG 4 cut(s) 244, 379, 734, 774
HphI GGTGA 4 cut(s) 220, 236, 527, 788
Hpy166II GTNNAC 3 cut(s) 6, 164, 671
Hpy188I TCNGA 5 cut(s) 154, 218, 349, 631, 785
Hpy188III TCNNGA 4 cut(s) 502, 884, 924, 1137
Hpy8I GTNNAC 3 cut(s) 6, 164, 671
Hpy99I CGWCG 1 cut(s) 697
HpyAV CCTTC 4 cut(s) 92, 205, 213, 960
HpyCH4III ACNGT 4 cut(s) 10, 481, 622, 697
HpyCH4IV ACGT 2 cut(s) 472, 1078
HpyF10VI GCNNNNNNNGC 6 cut(s) 247, 254, 274, 539, 863, 1109
HpyF3I CTNAG 6 cut(s) 147, 153, 158, 174, 528, 872
HpySE526I ACGT 2 cut(s) 472, 1078
Hsp92I GRCGYC 1 cut(s) 1078
Hsp92II CATG 9 cut(s) 277, 505, 553, 689, 733, 887, 922, 959, 1055
HspAI GCGC 1 cut(s) 248
KpnI GGTACC 1 cut(s) 767
LmnI GCTCC 2 cut(s) 246, 589
Lsp1109I GCAGC 5 cut(s) 195, 314, 351, 578, 971
LweI GCATC 2 cut(s) 303, 837
MaeII ACGT 2 cut(s) 472, 1078
MaeIII GTNAC 1 cut(s) 905
MboII GAAGA 4 cut(s) 68, 451, 567, 872
MhlI GDGCHC 4 cut(s) 8, 138, 586, 975
MluCI AATT 4 cut(s) 640, 999, 1041, 1047
MlyI GAGTC 2 cut(s) 714, 886
MmeI TCCRAC 1 cut(s) 644
Mph1103I ATGCAT 1 cut(s) 830
MseI TTAA 3 cut(s) 600, 644, 1002
MslI CAYNNNNRTG 2 cut(s) 206, 506
MspI CCGG 4 cut(s) 244, 379, 734, 774
MspR9I CCNGG 4 cut(s) 84, 245, 710, 735
MvaI CCWGG 2 cut(s) 84, 710
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 6 cut(s) 247, 254, 274, 539, 863, 1109
NciI CCSGG 2 cut(s) 245, 735
NdeI CATATG 2 cut(s) 203, 895
NlaIII CATG 9 cut(s) 277, 505, 553, 689, 733, 887, 922, 959, 1055
NlaIV GGNNCC 3 cut(s) 585, 765, 1111
NsiI ATGCAT 1 cut(s) 830
NspI RCATGY 1 cut(s) 959
PaeI GCATGC 1 cut(s) 959
PagI TCATGA 2 cut(s) 501, 883
PflFI GACNNNGTC 1 cut(s) 622
PflMI CCANNNNNTGG 1 cut(s) 83
PinAI ACCGGT 1 cut(s) 773
PkrI GCNGC 5 cut(s) 185, 304, 366, 568, 986
PleI GAGTC 2 cut(s) 714, 885
PpsI GAGTC 2 cut(s) 714, 885
Psp1406I AACGTT 1 cut(s) 472
Psp6I CCWGG 2 cut(s) 82, 708
PspEI GGTNACC 1 cut(s) 905
PspGI CCWGG 2 cut(s) 82, 708
PspN4I GGNNCC 3 cut(s) 585, 765, 1111
PspPI GGNCC 1 cut(s) 697
PstI CTGCAG 1 cut(s) 568
PsyI GACNNNGTC 1 cut(s) 622
RsaI GTAC 2 cut(s) 521, 765
RsaNI GTAC 2 cut(s) 520, 764
RseI CAYNNNNRTG 2 cut(s) 206, 506
SaqAI TTAA 3 cut(s) 600, 644, 1002
SatI GCNGC 5 cut(s) 184, 303, 365, 567, 985
Sau96I GGNCC 1 cut(s) 697
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 2 cut(s) 714, 886
ScrFI CCNGG 4 cut(s) 84, 245, 710, 735
SduI GDGCHC 4 cut(s) 8, 138, 586, 975
SfaNI GCATC 2 cut(s) 303, 837
SfcI CTRYAG 1 cut(s) 564
SinI GGWCC 1 cut(s) 697
SmiMI CAYNNNNRTG 2 cut(s) 206, 506
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SphI GCATGC 1 cut(s) 959
Sse9I AATT 4 cut(s) 640, 999, 1041, 1047
SsiI CCGC 1 cut(s) 257
SspI AATATT 1 cut(s) 604
StyD4I CCNGG 4 cut(s) 82, 243, 708, 733
StyI CCWWGG 1 cut(s) 1072
TaaI ACNGT 4 cut(s) 10, 481, 622, 697
TaiI ACGT 2 cut(s) 475, 1081
TaqI TCGA 1 cut(s) 756
TaqII GACCGA 1 cut(s) 876
TasI AATT 4 cut(s) 640, 999, 1041, 1047
TatI WGTACW 1 cut(s) 519
Tru1I TTAA 3 cut(s) 600, 644, 1002
Tru9I TTAA 3 cut(s) 600, 644, 1002
TscAI CASTG 4 cut(s) 13, 532, 986, 1000
TseI GCWGC 5 cut(s) 183, 302, 364, 566, 984
TspDTI ATGAA 5 cut(s) 458, 490, 718, 872, 1040
TspGWI ACGGA 2 cut(s) 820, 826
TspRI CASTG 4 cut(s) 13, 532, 986, 1000
Tth111I GACNNNGTC 1 cut(s) 622
Van91I CCANNNNNTGG 1 cut(s) 83
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 1 cut(s) 697
XapI RAATTY 2 cut(s) 1041, 1047
XceI RCATGY 1 cut(s) 959
ZraI GACGTC 1 cut(s) 1079
ZrmI AGTACT 1 cut(s) 521
Zsp2I ATGCAT 1 cut(s) 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.