FvH4_7g09451

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013710
Physical Location & Seq
Reverse (-)
9073538 .. 9073991
454 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09451.t1

Sequence Viewer

Length: 315 bp
ATGGCACAACTTTTTTTCGACAAGAGGCTGAGGCGTCGACAGCAATATGTGGTGCATGTGCACGTTAAGCGGCATGATGGTGCCCTTGTGACATGGTGTGAGGATGTGCTTGAGGCCAAGCATGCCTTATTGGAGCAACACAGAGCAGAACAAACTTTTAGTAGCCAAGCACACAAGCATGACTTTGGTTCTCCATCGGCCTCGCTTGTCTTCGCTACAATCTTAGTCTTCCTTCTTAGACGTGCATTTGGTTCTCAAGAGGCAACACTTCTATTCACCAGTGCTTCTTGTTACATTTACTCCCTTTCTGCTTAG

Protein Analysis

105

Amino Acids

11.92

Weight (kDa)

9.14

Isoelectric Point (pI)

65.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 10 - 71 5.1e-06 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 37
AciI CCGC 1 cut(s) 70
AcyI GRCGYC 1 cut(s) 34
AjiI CACGTC 1 cut(s) 242
Alw21I GWGCWC 1 cut(s) 63
Alw44I GTGCAC 1 cut(s) 59
AoxI GGCC 2 cut(s) 114, 198
ApaLI GTGCAC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 268
BaeGI GKGCMC 2 cut(s) 63, 85
BanI GGYRCC 1 cut(s) 80
BbsI GAAGAC 2 cut(s) 202, 220
Bbv12I GWGCWC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 29
BccI CCATC 2 cut(s) 71, 202
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 82
BpiI GAAGAC 2 cut(s) 202, 220
Bpu10I CCTNAGC 1 cut(s) 29
BpuEI CTTGAG 2 cut(s) 131, 240
BsaHI GRCGYC 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bse1I ACTGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 279
BseSI GKGCMC 2 cut(s) 63, 85
BshFI GGCC 2 cut(s) 116, 200
BshNI GGYRCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 63
BsnI GGCC 2 cut(s) 116, 200
Bsp1286I GDGCHC 2 cut(s) 63, 85
BspACI CCGC 1 cut(s) 70
BspANI GGCC 2 cut(s) 116, 200
BspCNI CTCAG 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 279
BssNI GRCGYC 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 4 cut(s) 29, 223, 236, 312
BstF5I GGATG 1 cut(s) 109
BstMWI GCNNNNNNNGC 3 cut(s) 40, 67, 122
BstNSI RCATGY 2 cut(s) 59, 125
BstSLI GKGCMC 2 cut(s) 63, 85
BstV2I GAAGAC 2 cut(s) 202, 220
BsuRI GGCC 2 cut(s) 116, 200
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 123
CseI GACGC 1 cut(s) 23
CviAII CATG 5 cut(s) 56, 74, 93, 122, 179
CviJI RGCY 4 cut(s) 28, 116, 165, 200
CviKI_1 RGCY 4 cut(s) 28, 116, 165, 200
DdeI CTNAG 4 cut(s) 29, 223, 236, 312
FaeI CATG 5 cut(s) 59, 77, 96, 125, 182
FaiI YATR 6 cut(s) 48, 57, 75, 94, 123, 180
FalI AAGNNNNNCTT 4 cut(s) 110, 142, 167, 199
FatI CATG 5 cut(s) 55, 73, 92, 121, 178
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 2 cut(s) 116, 200
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 34
Hin1II CATG 5 cut(s) 59, 77, 96, 125, 182
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 38, 61
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 2 cut(s) 38, 61
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 242
HpyCH4IV ACGT 2 cut(s) 63, 241
HpyCH4V TGCA 3 cut(s) 55, 61, 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 67, 122
HpyF3I CTNAG 4 cut(s) 29, 223, 236, 312
HpySE526I ACGT 2 cut(s) 63, 241
Hsp92I GRCGYC 1 cut(s) 34
Hsp92II CATG 5 cut(s) 59, 77, 96, 125, 182
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 1 cut(s) 292
MaeII ACGT 2 cut(s) 63, 241
MaeIII GTNAC 2 cut(s) 88, 290
MboII GAAGA 2 cut(s) 202, 220
MhlI GDGCHC 2 cut(s) 63, 85
MnlI CCTC 6 cut(s) 18, 24, 94, 106, 211, 253
MseI TTAA 1 cut(s) 66
MslI CAYNNNNRTG 2 cut(s) 78, 177
MwoI GCNNNNNNNGC 3 cut(s) 40, 67, 122
NlaIII CATG 5 cut(s) 59, 77, 96, 125, 182
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 2 cut(s) 59, 125
PaeI GCATGC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 82
RseI CAYNNNNRTG 2 cut(s) 78, 177
SalI GTCGAC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 71
SduI GDGCHC 2 cut(s) 63, 85
SetI ASST 2 cut(s) 66, 244
SmiMI CAYNNNNRTG 2 cut(s) 78, 177
SmlI CTYRAG 2 cut(s) 110, 255
SmoI CTYRAG 2 cut(s) 110, 255
SphI GCATGC 1 cut(s) 125
SsiI CCGC 1 cut(s) 70
TaiI ACGT 2 cut(s) 66, 244
TaqI TCGA 2 cut(s) 18, 37
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 88
TspRI CASTG 1 cut(s) 286
VneI GTGCAC 1 cut(s) 59
XceI RCATGY 2 cut(s) 59, 125
XmiI GTMKAC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.