Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004436.1

Orthogroup ID

OG0013710

Physical Location & Seq

Genomic Coordinates Forward (+)

9734 .. 10885

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004436.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atggctcatatcatagaggacacagtgcatctttcatttatgctcttttttgtcatctcaggccttgtggtgaatctcattcaagccattttcttcgtcctgattcggcctttatctaagaatatacacagaaggattaacggagtagtcgcagaattgttatggctggaggtggtgtggctcgtggagtggggggcaggccttgagattcaagtacacacagataatgaccccaaaacaatgaccggcgtgatgggtaaagaaaatgccattgtcgtttctaattatggaaatgatatcaatttcattccggtcctggctcagcgctctggttgcctctgcagctcattatttattgttaacgacaaattcaccaagttccttcctgtcattggttgggcgatgtggttctctgaaaatatctttatggagagtaactattggggtccgaaccaagacaaagcctcggcatatatatcaggtctccgtggactcaagaacttccctcgccctatatggatgactctacgttcagaagaaacaggaggaggtgggatgagaagtgaggcctttgtctctgtagtgaaacacatgaggtcttttgttccagccgtgtatgatgttacaatcgccttccctgaagctcgatcagattcacctcaaacactgttacaactcttctacgagaggctgaggcgacgaaagtcatatgtggtgcatgtgcatgttaagcggcatgagattaggggattgcctcgtaaacatggtgcccttgagaaatggtgtgaggatgtgttggaggccaagcaagccttattggaccaacacagagcagaccaaacttttggtgaccaagtacaagtactagaaacatgctctggtaaacgccggccactcaagcctattttggttgttacctcttgggcacttgcatttgtattctcggcaatcaagttccccctcttatctttactagtgctactcattgcatcctcaggcctgacttactttctcaatcggggccgcttgtcttccctactgctgaatcttacagccttccttcttagacgtgcttttggttctcaagttgcatcacttctcctcattagtgcttcttattacatttacttccttcctgttgtaggagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003841 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008374 GO:0012505 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0042171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071617

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04072 map00561 map00564 map01100 map01110 map04072

Pfam Domains

Protein Families

Acyltransf_C Acyltransferase

Protein Analysis

383

Amino Acids

43.38

Weight (kDa)

9.39

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g09451
rosa_chinensis	RchiOBHm_Chr4g0396181
rosa_laevigata	RLG00000009560 RLG00000009562 RLG00000018346
rosa_multiflora	Rmu_sc0003454.1_g000024 Rmu_sc0003454.1_g000025 Rmu_sc0003454.1_g000027 Rmu_sc0004436.1_g000003 Rmu_sc0006325.1_g000043
rosa_roxburghii	Rroxscaffold_2G00126530
rosa_rugosa	Rorug02G0212500 Rorug03G0351000
rosa_samantha	Rh2AG267600 Rh2DG274700 Rh2DG294000 Rh4BG065500 Rh4CG072200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	767
AciI	CCGC	2 cut(s)	733, 1024
AcoI	YGGCCR	1 cut(s)	890
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	3 cut(s)	216, 858, 864
AfeI	AGCGCT	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	392, 1142
AgsI	TTSAA	2 cut(s)	83, 212
AhlI	ACTAGT	1 cut(s)	973
AjiI	CACGTC	1 cut(s)	1070
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	2 cut(s)	345, 644
AluI	AGCT	2 cut(s)	345, 644
Alw26I	GTCTC	2 cut(s)	488, 580
Aor51HI	AGCGCT	1 cut(s)	326
AoxI	GGCC	8 cut(s)	61, 107, 199, 567, 801, 890, 997, 1021
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	1 cut(s)	368
ArsI	GACNNNNNNTTYG	2 cut(s)	827, 859
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	4 cut(s)	313, 446, 820, 1021
AsuHPI	GGTGA	4 cut(s)	82, 364, 648, 860
AvaII	GGWCC	3 cut(s)	313, 446, 820
AxyI	CCTNAGG	1 cut(s)	994
BaeGI	GKGCMC	2 cut(s)	772, 928
BanI	GGYRCC	1 cut(s)	767
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	1023
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	596
BciT130I	CCWGG	1 cut(s)	317
BcoDI	GTCTC	2 cut(s)	488, 580
BcuI	ACTAGT	1 cut(s)	973
BfaI	CTAG	2 cut(s)	866, 974
BfmI	CTRYAG	2 cut(s)	340, 579
BfoI	RGCGCY	1 cut(s)	328
BisI	GCNGC	3 cut(s)	343, 734, 1024
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	3 cut(s)	344, 735, 1025
BmcAI	AGTACT	1 cut(s)	864
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	3 cut(s)	313, 446, 820
BmgBI	CACGTC	1 cut(s)	1070
BmgT120I	GGNCC	4 cut(s)	313, 446, 820, 1021
BmiI	GGNNCC	3 cut(s)	447, 769, 1022
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	3 cut(s)	37, 998, 1100
BoxI	GACNNNNGTC	1 cut(s)	703
BpiI	GAAGAC	1 cut(s)	1023
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	692
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	5 cut(s)	224, 479, 794, 881, 1068
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	465, 487
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 1142
Bse118I	RCCGGY	2 cut(s)	245, 888
Bse21I	CCTNAGG	1 cut(s)	994
Bse3DI	GCAATG	1 cut(s)	984
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	465, 487
BseGI	GGATG	4 cut(s)	525, 561, 796, 989
BseLI	CCNNNNNNNGG	2 cut(s)	392, 1142
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	4 cut(s)	72, 335, 683, 1008
BseRI	GAGGAG	2 cut(s)	561, 1091
BseSI	GKGCMC	2 cut(s)	772, 928
BseXI	GCAGC	1 cut(s)	354
BshFI	GGCC	8 cut(s)	63, 109, 201, 569, 803, 892, 999, 1023
BshNI	GGYRCC	1 cut(s)	767
BsiSI	CCGG	3 cut(s)	246, 311, 889
BslI	CCNNNNNNNGG	2 cut(s)	392, 1142
BsmAI	GTCTC	2 cut(s)	488, 580
BsnI	GGCC	8 cut(s)	63, 109, 201, 569, 803, 892, 999, 1023
Bso31I	GGTCTC	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	772, 928
Bsp143I	GATC	1 cut(s)	647
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	2 cut(s)	733, 1024
BspANI	GGCC	8 cut(s)	63, 109, 201, 569, 803, 892, 999, 1023
BspCNI	CTCAG	4 cut(s)	71, 334, 684, 1007
BspLI	GGNNCC	3 cut(s)	447, 769, 1022
BspMAI	CTGCAG	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	767
BspTNI	GGTCTC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	984
BsrFI	RCCGGY	2 cut(s)	245, 888
BssAI	RCCGGY	2 cut(s)	245, 888
BssECI	CCNNGG	2 cut(s)	465, 487
BssMI	GATC	1 cut(s)	647
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	25, 669
Bst6I	CTCTTC	1 cut(s)	683
BstC8I	GCNNGC	3 cut(s)	199, 810, 890
BstDEI	CTNAG	6 cut(s)	58, 117, 321, 692, 994, 1064
BstDSI	CCRYGG	1 cut(s)	487
BstEII	GGTNACC	1 cut(s)	848
BstENI	CCTNNNNNAGG	1 cut(s)	1140
BstF5I	GGATG	4 cut(s)	525, 561, 796, 989
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	1 cut(s)	650
BstMAI	GTCTC	2 cut(s)	488, 580
BstMBI	GATC	1 cut(s)	647
BstMWI	GCNNNNNNNGC	5 cut(s)	333, 342, 730, 809, 898
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	3 cut(s)	722, 728, 876
BstPAI	GACNNNNGTC	1 cut(s)	703
BstPI	GGTNACC	1 cut(s)	848
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	2 cut(s)	340, 579
BstSLI	GKGCMC	2 cut(s)	772, 928
BstV1I	GCAGC	1 cut(s)	354
BstV2I	GAAGAC	1 cut(s)	1023
BstXI	CCANNNNNNTGG	1 cut(s)	845
Bsu36I	CCTNAGG	1 cut(s)	994
BsuRI	GGCC	8 cut(s)	63, 109, 201, 569, 803, 892, 999, 1023
BtgI	CCRYGG	1 cut(s)	487
BtgZI	GCGATG	1 cut(s)	416
BtrI	CACGTC	1 cut(s)	1070
BtsCI	GGATG	4 cut(s)	525, 561, 796, 989
BtsIMutI	CAGTG	2 cut(s)	30, 665
Cac8I	GCNNGC	3 cut(s)	199, 810, 890
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	2 cut(s)	245, 888
Cfr13I	GGNCC	4 cut(s)	313, 446, 820, 1021
Csp6I	GTAC	3 cut(s)	215, 857, 863
CviAII	CATG	6 cut(s)	592, 719, 725, 737, 764, 873
CviQI	GTAC	3 cut(s)	215, 857, 863
DdeI	CTNAG	6 cut(s)	58, 117, 321, 692, 994, 1064
DpnI	GATC	1 cut(s)	649
DpnII	GATC	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	890
Eam1104I	CTCTTC	1 cut(s)	683
EarI	CTCTTC	1 cut(s)	683
Eco147I	AGGCCT	4 cut(s)	63, 201, 569, 999
Eco31I	GGTCTC	1 cut(s)	488
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	3 cut(s)	313, 446, 820
Eco47III	AGCGCT	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	660
Eco81I	CCTNAGG	1 cut(s)	994
Eco91I	GGTNACC	1 cut(s)	848
EcoNI	CCTNNNNNAGG	1 cut(s)	1140
EcoO65I	GGTNACC	1 cut(s)	848
EcoRII	CCWGG	1 cut(s)	315
EcoRV	GATATC	1 cut(s)	298
FaeI	CATG	6 cut(s)	595, 722, 728, 740, 767, 876
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FatI	CATG	6 cut(s)	591, 718, 724, 736, 763, 872
FauNDI	CATATG	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	343, 734, 1024
FokI	GGATG	4 cut(s)	532, 568, 803, 976
Fsp4HI	GCNGC	3 cut(s)	343, 734, 1024
FspBI	CTAG	2 cut(s)	866, 974
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	3 cut(s)	343, 734, 1024
GsuI	CTGGAG	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	8 cut(s)	63, 109, 201, 569, 803, 892, 999, 1023
HapII	CCGG	3 cut(s)	246, 311, 889
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	6 cut(s)	595, 722, 728, 740, 767, 876
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	7 cut(s)	73, 103, 208, 492, 523, 653, 1045
HpaI	GTTAAC	1 cut(s)	361
HpaII	CCGG	3 cut(s)	246, 311, 889
HphI	GGTGA	4 cut(s)	82, 364, 648, 860
Hpy166II	GTNNAC	5 cut(s)	217, 361, 491, 761, 884
Hpy188I	TCNGA	4 cut(s)	415, 450, 535, 652
Hpy188III	TCNNGA	2 cut(s)	100, 496
Hpy8I	GTNNAC	5 cut(s)	217, 361, 491, 761, 884
Hpy99I	CGWCG	1 cut(s)	702
HpyAV	CCTTC	6 cut(s)	126, 392, 643, 1066, 1070, 1142
HpyCH4III	ACNGT	2 cut(s)	25, 669
HpyCH4IV	ACGT	2 cut(s)	529, 1069
HpyCH4V	TGCA	7 cut(s)	28, 342, 718, 724, 932, 989, 1091
HpyF10VI	GCNNNNNNNGC	5 cut(s)	333, 342, 730, 809, 898
HpyF3I	CTNAG	6 cut(s)	58, 117, 321, 692, 994, 1064
HpySE526I	ACGT	2 cut(s)	529, 1069
Hsp92II	CATG	6 cut(s)	595, 722, 728, 740, 767, 876
HspAI	GCGC	1 cut(s)	325
KroI	GCCGGC	1 cut(s)	888
KroNI	GCCGGC	1 cut(s)	890
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	1 cut(s)	647
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	3 cut(s)	37, 998, 1100
MaeI	CTAG	2 cut(s)	866, 974
MaeII	ACGT	2 cut(s)	529, 1069
MaeIII	GTNAC	5 cut(s)	434, 622, 669, 848, 913
MalI	GATC	1 cut(s)	649
MboI	GATC	1 cut(s)	647
MboII	GAAGA	4 cut(s)	85, 548, 670, 1023
MhlI	GDGCHC	2 cut(s)	772, 928
MluCI	AATT	4 cut(s)	155, 283, 301, 368
MlyI	GAGTC	2 cut(s)	486, 517
MmeI	TCCRAC	1 cut(s)	777
MroNI	GCCGGC	1 cut(s)	888
MseI	TTAA	3 cut(s)	138, 360, 729
MslI	CAYNNNNRTG	1 cut(s)	723
MspI	CCGG	3 cut(s)	246, 311, 889
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	5 cut(s)	333, 342, 730, 809, 898
NaeI	GCCGGC	1 cut(s)	890
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	1 cut(s)	647
NgoMIV	GCCGGC	1 cut(s)	888
NlaIII	CATG	6 cut(s)	595, 722, 728, 740, 767, 876
NlaIV	GGNNCC	3 cut(s)	447, 769, 1022
NmeAIII	GCCGAG	2 cut(s)	446, 923
NmuCI	GTSAC	1 cut(s)	848
NspI	RCATGY	3 cut(s)	722, 728, 876
PceI	AGGCCT	4 cut(s)	63, 201, 569, 999
PdiI	GCCGGC	1 cut(s)	890
PfeI	GAWTC	5 cut(s)	73, 103, 208, 653, 1045
PkrI	GCNGC	3 cut(s)	344, 735, 1025
PleI	GAGTC	2 cut(s)	486, 517
PpsI	GAGTC	2 cut(s)	486, 517
PshAI	GACNNNNGTC	1 cut(s)	703
Psp6I	CCWGG	1 cut(s)	315
PspEI	GGTNACC	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	3 cut(s)	447, 769, 1022
PspPI	GGNCC	4 cut(s)	313, 446, 820, 1021
PstI	CTGCAG	1 cut(s)	344
RsaI	GTAC	3 cut(s)	216, 858, 864
RsaNI	GTAC	3 cut(s)	215, 857, 863
RseI	CAYNNNNRTG	1 cut(s)	723
SaqAI	TTAA	3 cut(s)	138, 360, 729
SatI	GCNGC	3 cut(s)	343, 734, 1024
Sau3AI	GATC	1 cut(s)	647
Sau96I	GGNCC	4 cut(s)	313, 446, 820, 1021
ScaI	AGTACT	1 cut(s)	864
SchI	GAGTC	2 cut(s)	486, 517
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	772, 928
SfaNI	GCATC	3 cut(s)	37, 998, 1100
SfcI	CTRYAG	2 cut(s)	340, 579
SinI	GGWCC	3 cut(s)	313, 446, 820
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	5 cut(s)	203, 494, 773, 896, 1083
SmoI	CTYRAG	5 cut(s)	203, 494, 773, 896, 1083
SpeI	ACTAGT	1 cut(s)	973
Sse9I	AATT	4 cut(s)	155, 283, 301, 368
SseBI	AGGCCT	4 cut(s)	63, 201, 569, 999
SsiI	CCGC	2 cut(s)	733, 1024
SspMI	CTAG	2 cut(s)	866, 974
StuI	AGGCCT	4 cut(s)	63, 201, 569, 999
StyD4I	CCNGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	25, 669
TaiI	ACGT	2 cut(s)	532, 1072
TaqI	TCGA	1 cut(s)	646
TasI	AATT	4 cut(s)	155, 283, 301, 368
TatI	WGTACW	3 cut(s)	214, 856, 862
TauI	GCSGC	2 cut(s)	736, 1026
TfiI	GAWTC	5 cut(s)	73, 103, 208, 653, 1045
Tru1I	TTAA	3 cut(s)	138, 360, 729
Tru9I	TTAA	3 cut(s)	138, 360, 729
TscAI	CASTG	2 cut(s)	30, 672
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	2 cut(s)	24, 295
TspGWI	ACGGA	2 cut(s)	156, 476
TspRI	CASTG	2 cut(s)	30, 672
VpaK11BI	GGWCC	3 cut(s)	313, 446, 820
XagI	CCTNNNNNAGG	1 cut(s)	1140
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	3 cut(s)	722, 728, 876
XspI	CTAG	2 cut(s)	866, 974
ZrmI	AGTACT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.